Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 0.0e+00 1429.5 710 100.0
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 2.3e-235 819.3 708 59.3
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 3.9e-235 818.5 713 59.2
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 3.3e-234 815.5 722 58.3
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 8.1e-225 784.3 706 57.8
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 2.4e-221 772.7 719 56.2
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 2.3e-219 766.1 711 56.3
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 1.5e-218 763.5 709 54.9
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 9.6e-218 760.8 704 56.8
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 5.3e-216 755.0 717 56.3
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 2.6e-215 752.7 716 55.7
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 3.4e-215 752.3 711 55.6
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 1.7e-214 750.0 715 55.0
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 2.4e-213 746.1 704 56.7
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 7.9e-212 741.1 716 54.7
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 1.3e-211 740.3 676 57.2
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 6.7e-211 738.0 717 54.1
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 1.9e-210 736.5 679 56.4
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 5.6e-210 734.9 717 53.4
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 1.4e-208 730.3 715 54.0
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 6.9e-208 728.0 697 54.9
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 2.0e-207 726.5 710 53.7
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 2.6e-207 726.1 707 53.7
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 3.8e-206 722.2 715 53.7
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 3.5e-204 715.7 709 52.9
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 3.9e-203 712.2 709 53.5
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 4.3e-202 708.8 716 54.5
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 2.1e-201 706.4 716 54.3
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 4.8e-201 705.3 716 54.3
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 5.3e-200 701.8 664 55.1
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 3.4e-199 699.1 724 51.5
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 1.3e-198 697.2 717 51.2
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 5.0e-198 695.3 732 51.5
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 7.9e-196 688.0 759 50.5
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 7.9e-196 688.0 721 51.2
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 1.0e-195 687.6 711 50.6
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 2.3e-195 686.4 725 51.3
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 3.9e-195 685.6 711 50.8
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.1e-192 677.6 738 49.5
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 1.3e-190 670.6 709 50.4
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 3.2e-189 666.0 639 56.3
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 4.6e-188 662.1 708 51.3
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 4.6e-188 662.1 701 51.1
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 7.9e-188 661.4 664 52.7
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 2.0e-186 656.8 699 50.4
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 2.6e-186 656.4 705 49.5
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 4.4e-186 655.6 734 49.0
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 5.7e-186 655.2 642 57.2
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 3.7e-185 652.5 684 50.1
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 4.8e-185 652.1 712 48.7
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 4.8e-185 652.1 703 50.1
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 8.2e-185 651.4 702 50.0
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 1.4e-184 650.6 712 48.7
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 1.8e-184 650.2 706 49.7
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.3e-182 644.0 702 49.0
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 3.8e-182 642.5 715 51.2
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 5.5e-181 638.6 680 51.5
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 2.1e-180 636.7 702 49.1
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 3.6e-180 636.0 727 48.4
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 1.4e-179 634.0 705 49.1
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 1.5e-178 630.6 706 48.4
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 1.4e-176 624.0 716 47.8
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 7.0e-176 621.7 678 49.4
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 1.6e-175 620.5 701 48.5
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 3.5e-175 619.4 704 48.4
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 1.0e-174 617.8 701 48.4
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 5.0e-174 615.5 712 46.3
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 1.1e-173 614.4 716 47.6
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 3.2e-173 612.8 707 48.2
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 5.5e-173 612.1 706 47.9
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 2.1e-172 610.1 704 48.6
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.2e-170 604.4 711 47.4
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 1.2e-170 604.4 703 48.1
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 2.0e-170 603.6 728 46.7
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.6e-170 603.2 731 45.6
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 9.7e-170 601.3 664 49.8
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 2.2e-169 600.1 700 48.1
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 8.2e-169 598.2 709 47.7
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 9.1e-168 594.7 704 46.7
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 2.0e-167 593.6 709 47.4
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 6.5e-166 588.6 710 49.0
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 1.1e-165 587.8 711 46.7
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 4.7e-164 582.4 665 48.7
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 8.8e-163 578.2 758 43.3
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 3.1e-160 569.7 674 46.4
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 7.7e-159 565.1 738 44.9
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 2.3e-158 563.5 688 47.1
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 6.5e-158 562.0 673 47.1
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 6.8e-155 552.0 693 46.3
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.7e-153 547.4 650 47.5
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.0e-150 538.1 667 44.8
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 1.6e-148 530.8 700 43.1
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 1.3e-145 521.2 755 40.7
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 4.7e-140 502.7 664 44.3
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 7.0e-136 488.8 528 51.5
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 6.0e-135 485.7 692 41.0
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 1.3e-134 484.6 564 48.6
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 2.7e-127 460.3 761 37.6
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 3.9e-126 456.4 507 50.7
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 1.9e-125 454.1 760 37.1
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 3.4e-122 443.4 530 51.1
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 1.3e-121 441.4 369 58.8
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 1.7e-121 441.0 530 50.0
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 6.0e-119 432.6 753 36.7
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.2e-116 424.9 423 54.1
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 3.1e-115 420.2 623 40.0
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 5.2e-115 419.5 694 35.9
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.7e-111 407.1 482 49.0
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 3.3e-109 400.2 705 36.3
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 2.1e-103 380.9 647 37.9
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 1.7e-97 361.3 812 31.5
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 1.4e-96 358.2 275 62.5
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.6e-95 354.8 498 42.2
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 1.1e-91 342.0 258 62.0
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 2.7e-87 327.4 341 51.6
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 2.3e-86 324.3 248 62.5
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 3.1e-75 287.3 217 61.3
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 5.5e-72 276.6 327 45.9
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 3.7e-68 263.8 373 40.5
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 8.2e-52 209.5 310 38.7
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.8e-46 191.8 125 65.6
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 2.5e-32 144.8 119 61.3
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 1.9e-24 118.6 177 44.1
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 5.6e-24 117.1 169 43.8
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 1.4e-22 112.5 177 39.5
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 4.0e-22 110.9 163 44.2
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 1.1e-19 102.8 132 43.2
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.0e-17 96.3 128 41.4
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 5.8e-13 80.5 75 52.0
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 8.3e-12 76.6 82 53.7
A08p10430 Brassica napus HOM05D005685 ORTHO05D007046 6.6e-09 67.0 120 38.3
Eucgr.F01010 Eucalyptus grandis HOM05D000783 ORTHO05D000705 6.2e-07 60.5 71 45.1
RcHm_v2.0_Chr5g0028901 Rosa chinensis HOM05D005685 ORTHO05D007046 8.9e-06 56.6 40 62.5


User provided reference genes

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