Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 5.8e-127 457.6 237 100.0
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 4.0e-104 381.7 237 81.4
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 8.4e-102 374.0 234 81.6
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 2.5e-101 372.5 234 81.6
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 3.2e-101 372.1 237 79.7
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 3.2e-101 372.1 234 81.2
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 9.3e-101 370.5 237 79.3
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 1.2e-100 370.2 234 79.1
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 1.6e-100 369.8 234 79.5
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 2.1e-100 369.4 234 79.1
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 4.6e-100 368.2 234 78.6
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 4.6e-100 368.2 237 78.9
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 3.0e-99 365.5 237 78.9
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.3e-98 362.1 234 77.8
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 9.7e-98 360.5 234 79.5
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 1.3e-97 360.1 237 77.6
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 1.6e-97 359.8 234 77.8
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 2.2e-97 359.4 235 77.4
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 2.8e-97 359.0 235 78.7
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 4.8e-97 358.2 231 78.8
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 1.1e-96 357.1 235 76.2
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 1.8e-96 356.3 234 77.8
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 2.4e-96 355.9 234 76.9
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 3.1e-96 355.5 234 75.6
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 3.1e-96 355.5 234 75.6
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 3.1e-96 355.5 234 76.9
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 6.9e-96 354.4 234 76.9
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 6.9e-96 354.4 234 74.8
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 2.0e-95 352.8 234 76.9
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 2.6e-95 352.4 237 74.7
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 2.6e-95 352.4 237 74.3
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 3.4e-95 352.1 235 76.6
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 3.4e-95 352.1 234 75.6
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 4.5e-95 351.7 237 74.3
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 7.7e-95 350.9 237 75.1
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 1.3e-94 350.1 237 74.3
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 2.2e-94 349.4 237 74.7
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 2.2e-94 349.4 234 75.6
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 5.0e-94 348.2 237 74.3
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 1.4e-93 346.7 258 67.8
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 1.4e-93 346.7 235 75.7
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.9e-93 346.3 231 74.0
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 2.5e-93 345.9 237 73.4
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 3.2e-93 345.5 234 74.8
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 4.2e-93 345.1 237 73.4
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 5.5e-93 344.7 237 73.0
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 5.5e-93 344.7 237 73.4
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 7.2e-93 344.4 237 73.8
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 7.2e-93 344.4 237 74.3
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 7.2e-93 344.4 237 74.3
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 7.2e-93 344.4 237 73.8
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 7.2e-93 344.4 234 74.4
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 9.4e-93 344.0 237 74.3
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 2.1e-92 342.8 234 74.4
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 2.7e-92 342.4 234 74.8
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 2.7e-92 342.4 234 74.8
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 6.1e-92 341.3 234 72.6
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 7.9e-92 340.9 234 72.6
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 1.4e-91 340.1 235 74.0
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 1.8e-91 339.7 235 73.2
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 3.9e-91 338.6 234 74.4
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 3.9e-91 338.6 283 64.3
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 6.7e-91 337.8 270 64.8
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 6.7e-91 337.8 305 61.0
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 3.3e-90 335.5 233 73.4
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 4.3e-90 335.1 234 73.5
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 5.7e-90 334.7 235 73.2
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 7.4e-90 334.3 234 69.7
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 4.8e-89 331.6 229 73.4
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.8e-88 329.7 206 83.5
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 1.8e-88 329.7 235 69.4
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 3.1e-88 328.9 222 75.2
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 2.9e-86 322.4 205 79.5
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 2.9e-86 322.4 234 71.8
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 6.5e-86 321.2 235 68.5
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 8.5e-86 320.9 202 80.2
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 1.1e-85 320.5 234 67.9
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 3.2e-85 318.9 211 78.7
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 3.2e-85 318.9 207 78.3
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 1.6e-84 316.6 200 81.0
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 6.1e-84 314.7 202 78.7
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 7.9e-84 314.3 264 64.8
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.0e-83 312.4 218 73.9
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 5.1e-83 311.6 234 71.4
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 4.4e-82 308.5 235 66.4
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 4.4e-82 308.5 232 71.1
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 4.4e-82 308.5 232 71.1
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 2.8e-81 305.8 205 75.6
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 8.2e-81 304.3 237 65.8
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 8.2e-81 304.3 236 65.3
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 8.2e-81 304.3 204 76.5
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.1e-80 303.9 235 64.3
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.8e-80 303.1 232 66.4
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 5.3e-80 301.6 232 65.1
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 1.2e-79 300.4 235 63.8
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 4.5e-79 298.5 197 76.1
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 7.2e-77 291.2 186 76.9
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 8.8e-75 284.3 236 62.7
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 2.0e-74 283.1 236 62.7
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 7.4e-74 281.2 235 60.9
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 7.4e-74 281.2 235 60.9
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 7.4e-74 281.2 222 65.3
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 9.7e-74 280.8 220 60.9
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 1.7e-73 280.0 237 61.2
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 1.7e-73 280.0 235 60.4
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.7e-73 280.0 212 69.3
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.2e-73 279.6 229 64.2
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 2.4e-72 276.2 189 75.7
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 2.4e-72 276.2 237 58.2
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.2e-71 273.9 186 74.7
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 3.5e-71 272.3 228 57.5
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 6.5e-70 268.1 209 70.3
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 3.2e-69 265.8 168 78.6
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 8.0e-68 261.2 227 59.5
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 8.0e-68 261.2 167 78.4
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 5.7e-66 255.0 239 51.9
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 8.3e-65 251.1 167 76.6
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 3.8e-62 242.3 152 80.3
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 8.5e-62 241.1 227 54.2
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.5e-61 239.6 234 56.4
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 7.2e-61 238.0 222 55.0
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.7e-60 236.1 238 57.6
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 6.3e-57 224.9 148 76.4
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 8.3e-57 224.6 205 59.5
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 1.8e-51 206.8 170 60.0
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 3.5e-47 192.6 127 78.7
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.5e-45 187.2 234 46.6
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 2.5e-45 186.4 136 72.1
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.6e-44 183.7 136 69.9
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 1.7e-41 173.7 234 44.0
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 5.4e-40 168.7 237 46.4
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 1.6e-39 167.2 104 79.8
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.3e-38 164.1 106 73.6
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 1.2e-36 157.5 103 78.6
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 1.6e-36 157.1 112 71.4
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 3.1e-35 152.9 116 71.6
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 1.4e-32 144.1 263 38.8
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 3.2e-32 142.9 211 38.9
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 2.7e-31 139.8 76 85.5
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 9.5e-29 131.3 138 50.7
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 1.9e-24 117.1 210 34.3
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 1.5e-21 107.5 217 32.7
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 1.5e-21 107.5 217 32.7
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 1.6e-20 104.0 102 58.8
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 2.0e-18 97.1 75 64.0
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 2.2e-17 93.6 68 67.6
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 1.2e-15 87.8 197 33.0
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 1.2e-15 87.8 51 84.3
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.6e-15 87.4 89 47.2
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 9.0e-11 71.6 53 64.2
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 1.2e-10 71.2 53 62.3
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 2.6e-10 70.1 49 67.3
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 3.4e-10 69.7 52 61.5
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 4.9e-09 65.9 47 66.0
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 4.2e-08 62.8 50 54.0
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 7.9e-07 58.5 47 57.4
arahy.Tifrunner.gnm1.ann1.FL5MRT Arachis hypogaea HOM05D017492 ORTHO05D005320 1.7e-06 57.4 68 50.0
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 2.3e-06 57.0 46 63.0


User provided reference genes

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