Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 2.4e-125 452.2 237 100.0
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 2.8e-57 226.1 240 52.5
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.1e-56 222.2 234 54.7
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.1e-56 222.2 234 54.7
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 3.8e-54 215.7 237 54.0
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 5.0e-54 215.3 244 51.2
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 8.6e-54 214.5 239 50.6
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 1.6e-52 210.3 240 51.7
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 3.6e-52 209.1 235 52.8
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 6.1e-52 208.4 234 51.3
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 6.1e-52 208.4 242 52.1
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.4e-51 207.2 234 54.3
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 1.4e-51 207.2 241 50.2
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 1.2e-50 204.1 242 49.6
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 1.2e-50 204.1 242 52.1
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 1.3e-49 200.7 240 50.0
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 1.3e-49 200.7 236 51.3
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 1.7e-49 200.3 238 50.0
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 4.1e-48 195.7 243 47.3
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 4.5e-47 192.2 134 66.4
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 1.5e-45 187.2 158 60.8
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 1.9e-45 186.8 236 48.3
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 1.9e-45 186.8 123 68.3
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 3.3e-45 186.0 234 46.6
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 3.3e-45 186.0 240 47.1
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 5.6e-45 185.3 246 46.3
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 1.4e-43 180.6 172 55.2
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 1.4e-43 180.6 239 49.8
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 2.0e-42 176.8 241 48.1
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 5.8e-42 175.3 142 62.0
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 2.2e-41 173.3 167 53.9
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 2.9e-41 172.9 242 47.1
Manes.14G007000 Manihot esculenta HOM05D005772 ORTHO05D006468 4.9e-41 172.2 210 46.7
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 2.4e-40 169.9 215 47.4
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 1.7e-38 163.7 205 44.9
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 1.9e-37 160.2 216 47.2
SHI31127 Sapria himalayana HOM05D005772 ORTHO05D006468 2.8e-36 156.4 313 37.1
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 7.5e-34 148.3 130 53.8
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 2.9e-33 146.4 212 42.9
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 2.9e-33 146.4 216 40.7
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 8.3e-33 144.8 210 43.3
THA.LOC104813627 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 2.4e-32 143.3 268 38.1
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 3.2e-32 142.9 210 42.9
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 4.6e-31 139.0 211 42.7
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 4.6e-31 139.0 211 42.7
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 6.0e-31 138.7 211 43.6
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 7.8e-31 138.3 219 39.3
Sp5g33960 Schrenkiella parvula HOM05D005772 ORTHO05D006468 1.3e-30 137.5 214 42.5
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 1.7e-30 137.1 210 41.9
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 3.1e-27 126.3 106 53.8
Eucgr.A00749 Eucalyptus grandis HOM05D005772 ORTHO05D006468 1.5e-26 124.0 170 47.1
FvH4_6g36610 Fragaria vesca HOM05D005772 ORTHO05D006468 1.5e-26 124.0 176 46.0
Haze_16205 Corylus avellana HOM05D005772 ORTHO05D006468 2.0e-26 123.6 194 46.4
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 2.0e-26 123.6 234 35.9
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 5.8e-26 122.1 220 38.6
TPR.G38724 Trifolium pratense HOM05D003324 ORTHO05D006468 7.6e-26 121.7 203 42.9
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 4.9e-25 119.0 167 38.9
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 1.9e-24 117.1 154 42.9
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 5.4e-24 115.5 142 38.7
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 7.1e-24 115.2 246 35.4
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 9.2e-24 114.8 138 42.8
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 3.5e-23 112.8 142 37.3
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 7.8e-23 111.7 210 38.6
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 2.3e-22 110.2 158 40.5
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 3.0e-22 109.8 233 33.0
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 5.1e-22 109.0 231 36.8
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 1.1e-21 107.8 220 37.7
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 1.9e-21 107.1 230 35.7
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 2.5e-21 106.7 219 37.4
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 2.5e-21 106.7 243 33.3
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 3.3e-21 106.3 194 37.6
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 4.3e-21 105.9 119 46.2
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 5.6e-21 105.5 234 33.8
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 5.6e-21 105.5 236 36.9
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 5.6e-21 105.5 245 35.9
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 9.6e-21 104.8 157 40.1
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 2.8e-20 103.2 234 31.6
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 8.1e-20 101.7 225 36.0
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 1.1e-19 101.3 191 35.1
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 1.8e-19 100.5 241 31.1
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 2.4e-19 100.1 224 36.2
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 4.0e-19 99.4 243 32.9
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 5.2e-19 99.0 240 32.9
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 6.8e-19 98.6 114 42.1
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 2.0e-18 97.1 245 32.2
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 2.6e-18 96.7 118 39.0
Duzib192G0394 Durio zibethinus HOM05D005772 ORTHO05D006468 3.4e-18 96.3 130 43.1
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 7.6e-18 95.1 245 33.9
Atru.chr1.2602 Acer truncatum HOM05D005772 ORTHO05D006468 1.7e-17 94.0 145 48.3
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 1.7e-17 94.0 202 35.1
Zm00001eb215960 Zea mays HOM05D046982 ORTHO05D006468 1.7e-17 94.0 192 34.9
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 2.2e-17 93.6 245 32.2
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 3.8e-17 92.8 193 37.3
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 3.8e-17 92.8 131 39.7
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 4.9e-17 92.4 124 40.3
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 1.4e-16 90.9 118 37.3
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 1.4e-16 90.9 119 34.5
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 1.9e-16 90.5 234 33.3
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 1.9e-16 90.5 244 32.4
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 2.4e-16 90.1 153 43.1
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 5.4e-16 89.0 226 29.2
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 7.1e-16 88.6 167 34.1
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 2.1e-15 87.0 165 37.6
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 2.3e-14 83.6 108 37.0
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 2.3e-14 83.6 191 31.4
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 3.0e-14 83.2 235 33.2
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 3.9e-14 82.8 147 33.3
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 1.5e-13 80.9 205 34.6
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 2.5e-13 80.1 213 33.3
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 3.3e-13 79.7 102 40.2
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 3.3e-13 79.7 240 29.2
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 9.6e-13 78.2 157 33.8
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 9.6e-13 78.2 219 27.4
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 2.1e-12 77.0 228 28.5
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 1.4e-11 74.3 82 41.5
C05p20700 Brassica napus HOM05D005772 ORTHO05D006468 1.2e-10 71.2 86 37.2
QL06p047014 Quercus lobata HOM05D001071 ORTHO05D006468 1.2e-10 71.2 115 43.5
BcaB07g32170 Brassica carinata HOM05D005772 ORTHO05D006468 2.6e-10 70.1 84 39.3
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 2.6e-10 70.1 206 30.1
MD04G1024400 Malus domestica HOM05D005772 ORTHO05D006468 1.3e-09 67.8 109 42.2
Nitab4.5_0004208g0030 Nicotiana tabacum HOM05D005772 ORTHO05D006468 4.9e-09 65.9 197 28.4
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 6.4e-09 65.5 228 27.2
Solyc11g017475.1 Solanum lycopersicum HOM05D005772 ORTHO05D006468 6.4e-09 65.5 197 29.9
Atru.chr13.1514 Acer truncatum HOM05D005772 ORTHO05D006468 9.3e-08 61.6 139 35.3
Rhsim06G0101700 Rhododendron simsii HOM05D005772 ORTHO05D006468 1.6e-07 60.8 137 38.7
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 2.7e-07 60.1 65 40.0
SalBow5G3743 Salvia bowleyana HOM05D005772 ORTHO05D006468 2.7e-07 60.1 68 39.7
SGA_v2.0_scaffold2751G54198 Striga asiatica HOM05D005772 ORTHO05D006468 5.1e-06 55.8 112 36.6


User provided reference genes

Program Settings