Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 8.4e-105 383.6 186 100.0
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 3.3e-93 345.1 186 90.3
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 1.3e-86 323.2 186 82.3
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 3.0e-86 322.0 186 81.7
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 5.1e-86 321.2 186 81.7
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 1.1e-85 320.1 186 82.8
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 1.9e-85 319.3 186 80.6
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 3.3e-85 318.5 186 80.1
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 3.7e-84 315.1 186 79.0
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 4.8e-84 314.7 186 79.6
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 6.2e-84 314.3 186 77.4
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 4.0e-83 311.6 186 79.0
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 4.0e-83 311.6 186 78.0
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 5.3e-83 311.2 186 77.4
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 5.3e-83 311.2 186 79.6
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 4.5e-82 308.1 186 75.3
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 4.5e-82 308.1 186 76.9
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 4.5e-82 308.1 186 78.0
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 5.8e-82 307.8 186 78.0
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 7.6e-82 307.4 186 76.3
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 7.6e-82 307.4 186 76.9
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 9.9e-82 307.0 211 71.6
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 1.7e-81 306.2 184 77.7
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 1.7e-81 306.2 186 76.9
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 2.9e-81 305.4 186 76.3
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 4.9e-81 304.7 186 76.9
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 4.9e-81 304.7 186 75.8
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 4.9e-81 304.7 186 76.3
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 6.4e-81 304.3 186 75.3
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 6.4e-81 304.3 186 76.9
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 8.4e-81 303.9 186 75.3
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 1.1e-80 303.5 196 75.5
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 1.1e-80 303.5 186 76.3
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 1.9e-80 302.8 186 75.3
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 1.9e-80 302.8 186 76.9
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 2.4e-80 302.4 186 73.7
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 3.2e-80 302.0 186 75.3
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 3.2e-80 302.0 186 74.7
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 4.2e-80 301.6 186 76.3
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 4.2e-80 301.6 186 78.5
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 7.1e-80 300.8 186 72.6
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 9.3e-80 300.4 186 75.8
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 1.6e-79 299.7 186 75.3
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 2.7e-79 298.9 186 73.1
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 2.7e-79 298.9 186 76.3
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 3.5e-79 298.5 204 71.6
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 3.5e-79 298.5 186 71.5
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 3.5e-79 298.5 186 75.8
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 3.5e-79 298.5 185 76.8
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 7.9e-79 297.4 186 75.8
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 7.9e-79 297.4 186 74.7
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 3.0e-78 295.4 205 70.2
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 3.9e-78 295.0 186 74.2
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 5.1e-78 294.7 186 74.7
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 5.1e-78 294.7 171 81.9
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 6.7e-78 294.3 170 81.2
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 6.7e-78 294.3 186 73.1
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 1.1e-77 293.5 186 74.2
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.5e-77 293.1 186 73.1
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 1.9e-77 292.7 186 76.3
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 1.9e-77 292.7 186 74.2
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 2.5e-77 292.4 186 75.3
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 5.6e-77 291.2 186 72.6
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 2.8e-76 288.9 186 71.5
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 3.7e-76 288.5 184 73.4
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 2.4e-75 285.8 170 78.8
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 1.5e-74 283.1 170 75.9
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 2.0e-74 282.7 184 70.7
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 2.6e-74 282.3 186 70.4
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 5.8e-74 281.2 170 77.6
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 7.6e-74 280.8 186 69.4
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 6.5e-73 277.7 184 70.1
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 1.1e-72 276.9 184 69.6
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 1.9e-72 276.2 184 70.1
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 2.5e-72 275.8 173 74.6
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 5.5e-72 274.6 184 70.1
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 9.3e-72 273.9 184 69.6
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 9.3e-72 273.9 186 72.6
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 1.2e-71 273.5 184 68.5
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 1.6e-71 273.1 183 69.9
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 1.0e-70 270.4 184 68.5
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 1.8e-70 269.6 183 68.9
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 5.1e-70 268.1 184 67.9
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 6.7e-70 267.7 170 73.5
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 1.1e-69 266.9 174 71.3
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 1.5e-69 266.5 172 71.5
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 3.3e-69 265.4 184 66.8
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 3.3e-69 265.4 183 71.0
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 5.7e-69 264.6 183 67.2
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 5.7e-69 264.6 183 67.2
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 5.7e-69 264.6 183 67.2
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 2.2e-68 262.7 215 60.9
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 4.8e-68 261.5 187 68.4
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 3.8e-65 251.9 159 72.3
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 8.5e-65 250.8 182 63.7
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 6.1e-63 244.6 189 67.7
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 2.4e-59 232.6 183 60.1
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 4.1e-59 231.9 144 75.0
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 2.0e-58 229.6 186 62.9
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 1.2e-55 220.3 155 69.7
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 2.0e-53 213.0 151 70.2
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.2e-44 183.0 111 77.5
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 6.3e-44 181.4 111 76.6
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 4.7e-39 165.2 100 80.0
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 1.3e-36 157.1 124 62.9
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 4.8e-36 155.2 183 42.6
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 8.3e-36 154.5 183 43.2
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.1e-35 154.1 187 43.9
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 1.2e-34 150.6 97 73.2
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 1.2e-34 150.6 97 73.2
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 1.5e-32 143.7 107 63.6
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 1.9e-32 143.3 79 81.0
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 2.5e-32 142.9 180 42.8
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 2.0e-29 133.3 135 56.3
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 2.0e-29 133.3 135 56.3
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 9.8e-29 131.0 181 40.9
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 4.8e-28 128.6 106 64.2
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 2.9e-25 119.4 156 46.8
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 1.4e-22 110.5 79 63.3
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.8e-22 110.2 79 65.8
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.8e-22 110.2 79 65.8
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 1.5e-21 107.1 77 66.2
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 9.2e-19 97.8 123 48.8
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.3e-17 93.2 56 76.8
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 1.6e-15 87.0 122 45.1
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 4.7e-15 85.5 112 48.2
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 4.7e-15 85.5 112 48.2
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 8.0e-15 84.7 50 78.0
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 1.9e-08 63.5 48 58.3
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 9.5e-08 61.2 43 65.1
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 2.1e-07 60.1 36 80.6
QL08p004656 Quercus lobata HOM05D005997 ORTHO05D337365 3.1e-06 56.2 35 74.3


User provided reference genes

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