Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3544 Punica granatum HOM05D006710 ORTHO05D008353 8.1e-127 457.2 254 100.0
QL03p004347 Quercus lobata HOM05D006710 ORTHO05D008353 1.5e-93 346.7 253 71.5
TWI56G0551 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 4.5e-93 345.1 260 71.5
TWI12G0766 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 1.2e-90 337.0 212 81.6
Haze_04239 Corylus avellana HOM05D006710 ORTHO05D008353 1.6e-90 336.7 251 70.9
Actinidia23607 Actinidia chinensis HOM05D006710 ORTHO05D008353 2.1e-90 336.3 252 72.2
Potri.013G026500 Populus trichocarpa HOM05D006710 ORTHO05D008353 2.7e-90 335.9 254 69.7
Actinidia05724 Actinidia chinensis HOM05D006710 ORTHO05D008353 4.7e-90 335.1 254 74.8
Rhsim07G0179500 Rhododendron simsii HOM05D006710 ORTHO05D008353 4.7e-90 335.1 254 68.9
Sabra13G0027300 Salix brachista HOM05D006710 ORTHO05D008353 7.9e-90 334.3 226 76.1
Duzib177G0772 Durio zibethinus HOM05D006710 ORTHO05D008353 1.0e-89 334.0 254 69.7
Manes.09G163400 Manihot esculenta HOM05D006710 ORTHO05D008353 1.4e-89 333.6 212 81.6
Cpa.g.sc48.8 Carica papaya HOM05D006710 ORTHO05D008353 1.8e-89 333.2 213 79.8
Cfa006542 Carpinus fangiana HOM05D006710 ORTHO05D008353 1.8e-89 333.2 212 80.7
CSS0006596 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 5.1e-89 331.6 254 76.4
CiPaw.08G166900 Carya illinoinensis HOM05D006710 ORTHO05D008353 5.1e-89 331.6 254 69.3
Dinv40255 Davidia involucrata HOM05D006710 ORTHO05D008353 1.5e-88 330.1 254 68.9
CSS0018519 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 2.6e-88 329.3 214 79.9
AUR62005111 Chenopodium quinoa HOM05D006710 ORTHO05D008353 3.3e-88 328.9 213 76.5
Eucgr.H04455 Eucalyptus grandis HOM05D006710 ORTHO05D008353 2.2e-87 326.2 212 77.8
Gorai.013G204100 Gossypium raimondii HOM05D006710 ORTHO05D008353 3.7e-87 325.5 212 75.5
Thecc.05G308800 Theobroma cacao HOM05D006710 ORTHO05D008353 3.7e-87 325.5 254 67.7
Gohir.D13G178900 Gossypium hirsutum HOM05D006710 ORTHO05D008353 1.1e-86 323.9 259 64.9
Ciclev10002268m.g Citrus clementina HOM05D006710 ORTHO05D008353 1.4e-86 323.6 223 75.3
Gohir.A13G173100 Gossypium hirsutum HOM05D006710 ORTHO05D008353 1.4e-86 323.6 259 65.3
AUR62000864 Chenopodium quinoa HOM05D006710 ORTHO05D008353 1.8e-86 323.2 213 75.6
EL10Ac4g09302 Beta vulgaris HOM05D006710 ORTHO05D008353 5.3e-86 321.6 218 74.3
Nn4g26145 Nelumbo nucifera HOM05D006710 ORTHO05D008353 1.6e-85 320.1 257 67.3
FAN05G4089 Fragaria x ananassa HOM05D006710 ORTHO05D008353 2.0e-85 319.7 216 72.7
MSTRG.20477 Avicennia marina HOM05D006710 ORTHO05D008353 2.6e-85 319.3 211 76.3
RcHm_v2.0_Chr3g0454051 Rosa chinensis HOM05D006710 ORTHO05D008353 2.6e-85 319.3 217 73.7
CANSAT54G0344 Cannabis sativa HOM05D006710 ORTHO05D008353 4.5e-85 318.5 254 68.1
Prupe.6G330500 Prunus persica HOM05D006710 ORTHO05D008353 1.7e-84 316.6 223 71.3
vmacro05032 Vaccinium macrocarpon HOM05D006710 ORTHO05D008353 2.9e-84 315.8 213 76.1
Atru.chr2.492 Acer truncatum HOM05D006710 ORTHO05D008353 3.8e-84 315.5 217 75.6
Gohir.D11G272800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 8.5e-84 314.3 218 73.4
Gorai.007G294100 Gossypium raimondii HOM05D006710 ORTHO05D008353 8.5e-84 314.3 218 73.4
COL.COLO4_13519 Corchorus olitorius HOM05D000735 ORTHO05D000838 2.5e-83 312.8 221 72.9
CsaV3_2G004900 Cucumis sativus L. HOM05D006710 ORTHO05D008353 2.5e-83 312.8 212 75.5
PGSC0003DMG400026653 Solanum tuberosum HOM05D006710 ORTHO05D008353 2.5e-83 312.8 223 71.3
Sopen08g012960 Solanum pennellii HOM05D006710 ORTHO05D008353 3.2e-83 312.4 174 87.4
Solyc08g043180.3 Solanum lycopersicum HOM05D006710 ORTHO05D008353 2.7e-82 309.3 176 85.8
Peaxi162Scf00071g00728 Petunia axillaris HOM05D006710 ORTHO05D008353 3.6e-82 308.9 174 87.4
CAN.G809.16 Capsicum annuum HOM05D006710 ORTHO05D008353 6.1e-82 308.1 176 86.4
Nitab4.5_0010747g0020 Nicotiana tabacum HOM05D006710 ORTHO05D008353 4.0e-81 305.4 203 76.8
SalBow8G3090 Salvia bowleyana HOM05D006710 ORTHO05D008353 4.0e-81 305.4 180 82.2
FAN14G5365 Fragaria x ananassa HOM05D006710 ORTHO05D008353 6.7e-81 304.7 232 68.5
arahy.Tifrunner.gnm1.ann1.ACRB0G Arachis hypogaea HOM05D006710 ORTHO05D008353 8.8e-81 304.3 223 70.9
arahy.Tifrunner.gnm1.ann1.KZLY5F Arachis hypogaea HOM05D006710 ORTHO05D008353 2.0e-80 303.1 223 70.4
Thhalv10004765m.g Eutrema salsugineum HOM05D006710 ORTHO05D008353 4.4e-80 302.0 215 69.8
MD04G1209500 Malus domestica HOM05D006710 ORTHO05D008353 5.7e-80 301.6 215 71.6
Nitab4.5_0000424g0030 Nicotiana tabacum HOM05D006710 ORTHO05D008353 5.7e-80 301.6 169 87.6
unitig_0.g2209 Utricularia gibba HOM05D006710 ORTHO05D008353 7.5e-80 301.2 212 71.7
THA.LOC104802809 Tarenaya hassleriana HOM05D006710 ORTHO05D008353 9.7e-80 300.8 214 70.1
HanXRQChr09g0258761 Helianthus annuus HOM05D006710 ORTHO05D008353 1.3e-79 300.4 213 72.8
CARHR185990 Cardamine hirsuta HOM05D006710 ORTHO05D008353 2.2e-79 299.7 223 69.5
MBI19_g27535_MAGBIO Magnolia biondii HOM05D006710 ORTHO05D008353 2.2e-79 299.7 225 70.2
Lalb_Chr15g0077091 Lupinus albus HOM05D006710 ORTHO05D008353 3.7e-79 298.9 212 72.2
FAN09G4503 Fragaria x ananassa HOM05D006710 ORTHO05D008353 1.4e-78 297.0 257 61.5
MD12G1224100 Malus domestica HOM05D006710 ORTHO05D008353 1.4e-78 297.0 214 70.1
Glyma.10G157000 Glycine max HOM05D006710 ORTHO05D008353 3.1e-78 295.8 190 77.9
Lj9A681T40 Lonicera japonica HOM05D006710 ORTHO05D008353 4.1e-78 295.4 250 62.8
BcaNung02465 Brassica carinata HOM05D006710 ORTHO05D008353 2.0e-77 293.1 220 68.2
Sed0009429 Sechium edule HOM05D006710 ORTHO05D008353 2.7e-77 292.7 222 68.9
Sc09g0003360 Simmondsia chinensis HOM05D006710 ORTHO05D006029 3.5e-77 292.4 162 86.4
BcaNung04366 Brassica carinata HOM05D006710 ORTHO05D008353 4.5e-77 292.0 213 69.0
Ah.06g190140 Amaranthus hybridus HOM05D006710 ORTHO05D008353 7.7e-77 291.2 215 71.6
Phvul.007G182300 Phaseolus vulgaris HOM05D006710 ORTHO05D008353 7.7e-77 291.2 216 69.0
ClCG02G016080 Citrullus lanatus HOM05D006710 ORTHO05D008353 1.0e-76 290.8 222 69.4
VMungo0720G2835 Vigna mungo HOM05D006710 ORTHO05D008353 1.3e-76 290.4 213 69.5
Aqoxy2G03215 Aquilegia oxysepala HOM05D006710 ORTHO05D008353 1.7e-76 290.0 260 63.5
AL6G39620 Arabidopsis lyrata HOM05D006710 ORTHO05D008353 1.7e-76 290.0 213 68.1
ECA232G0378 Erigeron canadensis HOM05D006710 ORTHO05D008353 1.7e-76 290.0 220 68.6
Sp2g20620 Schrenkiella parvula HOM05D006710 ORTHO05D008353 2.2e-76 289.7 222 67.1
Hund07043 Selenicereus undatus HOM05D006710 ORTHO05D008353 3.8e-76 288.9 216 70.4
Migut.B01148 Erythranthe guttata HOM05D006710 ORTHO05D008353 1.9e-75 286.6 177 79.1
AT5G27390 Arabidopsis thaliana HOM05D006710 ORTHO05D008353 3.2e-75 285.8 223 65.9
CDE08G1170 Ceratophyllum demersum HOM05D006710 ORTHO05D008353 2.1e-74 283.1 216 68.5
Carub.0006s2515 Capsella rubella HOM05D006710 ORTHO05D008353 2.7e-74 282.7 213 67.1
C07p40720 Brassica napus HOM05D006710 ORTHO05D008353 3.6e-74 282.3 232 65.1
BolC7t44600H Brassica oleracea HOM05D006710 ORTHO05D008353 3.6e-74 282.3 232 65.1
Lalb_Chr02g0148381 Lupinus albus HOM05D006710 ORTHO05D008353 3.6e-74 282.3 213 70.4
FAN14G4294 Fragaria x ananassa HOM05D006710 ORTHO05D008353 3.0e-73 279.3 223 65.0
Ca_10089_v3 Cicer arietinum L. HOM05D006710 ORTHO05D008353 4.0e-73 278.9 217 67.7
A06p37590 Brassica napus HOM05D006710 ORTHO05D008353 5.2e-73 278.5 230 65.2
PSO407G0185 Papaver somniferum HOM05D006710 ORTHO05D008353 2.6e-72 276.2 256 59.4
PSO170G1405 Papaver somniferum HOM05D006710 ORTHO05D008353 3.4e-72 275.8 256 59.4
ATR0626G338 Amborella trichopoda HOM05D006710 ORTHO05D008353 4.4e-72 275.4 224 65.2
Os05g0401300 Oryza sativa ssp. japonica HOM05D006710 ORTHO05D008353 5.7e-72 275.0 222 63.5
Lj5g0024082 Lotus japonicus HOM05D006710 ORTHO05D008353 2.8e-71 272.7 213 65.3
HPP92_013667 Vanilla planifolia HOM05D006710 ORTHO05D008353 9.1e-70 267.7 222 64.4
Zm00001eb346790 Zea mays HOM05D006710 ORTHO05D008353 3.5e-69 265.8 177 70.6
Gohir.A11G262800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 1.7e-68 263.5 189 69.8
Medtr1g082430 Medicago truncatula HOM05D006710 ORTHO05D008353 1.7e-68 263.5 242 57.9
SGA_v2.0_scaffold244G44356 Striga asiatica HOM05D006710 ORTHO05D008353 3.2e-67 259.2 214 64.5
Psat6g148920 Pisum sativum HOM05D006710 ORTHO05D008353 1.2e-66 257.3 226 57.5
GSVIVG01000003001 Vitis vinifera HOM05D006710 ORTHO05D008353 3.0e-65 252.7 144 88.9
SEGI_09082 Sequoiadendron giganteum HOM05D006710 ORTHO05D008353 6.3e-63 245.0 179 63.7
BraA06t26678Z Brassica rapa HOM05D006710 ORTHO05D008353 1.6e-61 240.4 209 62.7
TAR362G0522 Trochodendron aralioides HOM05D006710 ORTHO05D008353 1.6e-61 240.4 144 84.7
Aa31LG11G9170 Aethionema arabicum HOM05D006710 ORTHO05D008353 3.5e-61 239.2 247 55.5
Lsat_1_v5_gn_8_116001 Lactuca sativa HOM05D006710 ORTHO05D008353 5.9e-61 238.4 189 65.6
CDE02G4396 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 3.2e-54 216.1 173 66.5
Glyma.20G231700 Glycine max HOM05D006710 ORTHO05D008353 1.9e-51 206.8 134 77.6
FAN05G4701 Fragaria x ananassa HOM05D006710 ORTHO05D008353 9.8e-48 194.5 204 52.9
AagrBONN_evm.TU.Sc2ySwM_368.548 Anthoceros agrestis HOM05D006710 ORTHO05D008353 4.9e-47 192.2 188 51.1
MELO3C004308.2 Cucumis melo HOM05D006710 ORTHO05D008353 2.0e-45 186.8 137 71.5
TPR.G327 Trifolium pratense HOM05D006710 ORTHO05D008353 6.0e-45 185.3 164 57.9
Cc02_g32640 Coffea canephora HOM05D006710 ORTHO05D008353 7.3e-43 178.3 95 91.6
Mapoly0057s0090 Marchantia polymorpha HOM05D006710 ORTHO05D008353 4.0e-41 172.6 166 50.0
Pp3c11_21800 Physcomitrium patens HOM05D006710 ORTHO05D008353 1.2e-40 171.0 168 47.6
SMO356G0400 Selaginella moellendorffii HOM05D006710 ORTHO05D008353 7.5e-40 168.3 191 47.6
FvH4_6g05310 Fragaria vesca HOM05D006710 ORTHO05D008353 9.8e-40 167.9 129 63.6
DCAR_022246 Daucus carota HOM05D006710 ORTHO05D008353 6.6e-36 155.2 131 61.8
Cc02_g32660 Coffea canephora HOM05D006710 ORTHO05D008353 1.5e-35 154.1 113 69.0
FAN02G1407 Fragaria x ananassa HOM05D006710 ORTHO05D008353 2.4e-30 136.7 99 64.6
EL10Ac7g17500 Beta vulgaris HOM05D006710 ORTHO05D008353 7.1e-30 135.2 96 69.8
Thecc.05G311300 Theobroma cacao HOM05D000126 ORTHO05D008353 9.9e-24 114.8 68 79.4
CBR_g32459 Chara braunii HOM05D000019 ORTHO05D000353 1.4e-14 84.3 213 30.5
MCO13G061 Micromonas commoda HOM05D006710 ORTHO05D008353 2.1e-13 80.5 132 33.3
Cre13.g564050 Chlamydomonas reinhardtii HOM05D006710 ORTHO05D008353 3.6e-10 69.7 187 27.3
Dinv22904 Davidia involucrata HOM05D006710 ORTHO05D008353 4.9e-07 59.3 62 48.4
HPP92_013649 Vanilla planifolia HOM05D006710 ORTHO05D008353 9.3e-06 55.1 35 71.4


User provided reference genes

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