Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 5.4e-171 604.4 331 100.0
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 1.3e-47 194.5 123 81.3
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 3.2e-46 189.9 364 42.6
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 4.9e-23 112.8 367 32.4
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.1e-22 111.7 367 32.7
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 3.2e-22 110.2 367 31.1
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 7.1e-22 109.0 363 32.2
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 1.2e-21 108.2 367 31.9
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 1.2e-21 108.2 358 30.7
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 6.0e-21 105.9 371 31.8
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 2.3e-20 104.0 367 30.8
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 2.3e-20 104.0 367 30.8
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 3.0e-20 103.6 363 31.7
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 5.1e-20 102.8 356 31.5
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 6.6e-20 102.4 357 30.8
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 8.6e-20 102.1 346 30.3
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.1e-19 101.7 355 31.0
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 1.1e-19 101.7 365 32.1
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 1.9e-19 100.9 366 30.1
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 2.5e-19 100.5 367 33.5
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 3.3e-19 100.1 386 29.8
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 4.3e-19 99.8 371 30.2
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 4.3e-19 99.8 346 29.5
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 2.1e-18 97.4 366 30.9
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 2.1e-18 97.4 366 30.9
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 2.1e-18 97.4 366 30.3
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.8e-18 97.1 356 31.2
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.8e-18 97.1 356 31.2
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 3.6e-18 96.7 357 30.8
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 3.6e-18 96.7 366 31.7
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 3.6e-18 96.7 351 31.1
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 3.6e-18 96.7 225 37.3
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 6.2e-18 95.9 314 31.8
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 6.2e-18 95.9 362 30.9
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 8.1e-18 95.5 363 28.9
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 1.4e-17 94.7 366 30.9
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-17 94.7 355 31.3
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-17 94.7 355 31.3
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 1.8e-17 94.4 363 28.9
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.4e-17 94.0 360 30.0
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.4e-17 94.0 353 30.3
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 2.4e-17 94.0 379 29.6
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 3.1e-17 93.6 359 29.0
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 3.1e-17 93.6 363 28.9
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 5.2e-17 92.8 368 29.9
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 5.2e-17 92.8 357 30.3
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 6.9e-17 92.4 367 30.0
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.9e-17 92.4 360 29.7
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 8.9e-17 92.0 351 30.5
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.5e-16 91.3 367 29.4
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.0e-16 90.9 277 31.8
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 2.0e-16 90.9 268 33.2
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 2.0e-16 90.9 357 29.7
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.6e-16 90.5 360 29.7
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 3.4e-16 90.1 337 29.4
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 4.4e-16 89.7 337 29.4
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 4.4e-16 89.7 337 29.4
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 4.4e-16 89.7 364 29.1
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 5.8e-16 89.4 313 31.3
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 7.6e-16 89.0 363 30.6
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 7.6e-16 89.0 361 28.5
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 9.9e-16 88.6 360 30.0
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.9e-16 88.6 360 30.0
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 9.9e-16 88.6 365 31.5
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 9.9e-16 88.6 211 36.5
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.3e-15 88.2 372 28.5
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 1.7e-15 87.8 362 30.4
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 2.2e-15 87.4 357 31.7
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 2.2e-15 87.4 354 31.6
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 2.9e-15 87.0 360 30.8
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.8e-15 86.7 366 27.9
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 3.8e-15 86.7 349 29.5
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 3.8e-15 86.7 358 29.9
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.4e-15 85.9 360 28.9
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 6.4e-15 85.9 363 30.3
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 8.4e-15 85.5 364 28.8
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.1e-14 85.1 367 28.1
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.1e-14 85.1 371 29.4
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 1.1e-14 85.1 374 30.5
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 1.4e-14 84.7 337 29.1
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 1.4e-14 84.7 337 29.1
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.4e-14 84.7 312 30.1
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 2.4e-14 84.0 283 30.4
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 2.4e-14 84.0 358 27.7
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 3.2e-14 83.6 128 45.3
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 5.4e-14 82.8 373 30.8
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 5.4e-14 82.8 373 30.8
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 7.1e-14 82.4 365 29.3
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 2.1e-13 80.9 362 28.7
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.7e-13 80.5 286 30.4
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 2.7e-13 80.5 364 27.7
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 7.8e-13 79.0 352 28.7
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.7e-12 77.8 334 29.6
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 3.9e-12 76.6 360 27.8
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 3.9e-12 76.6 376 27.4
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 5.1e-12 76.3 357 30.0
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 5.1e-12 76.3 281 29.9
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 6.6e-12 75.9 362 28.7
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 6.6e-12 75.9 272 31.2
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 8.7e-12 75.5 266 29.7
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 1.1e-11 75.1 368 26.9
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 1.1e-11 75.1 336 29.5
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 1.5e-11 74.7 358 27.7
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 1.9e-11 74.3 367 25.9
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 1.9e-11 74.3 396 28.3
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 3.3e-11 73.6 301 31.6
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 7.3e-11 72.4 366 27.9
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.1e-10 70.9 130 39.2
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 2.1e-10 70.9 366 29.0
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 2.1e-10 70.9 366 28.1
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 2.8e-10 70.5 345 27.5
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 3.6e-10 70.1 334 28.1
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 8.1e-10 68.9 346 28.9
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 8.1e-10 68.9 302 29.8
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 8.1e-10 68.9 369 29.0
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 1.1e-09 68.6 258 29.8
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 1.1e-09 68.6 93 44.1
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 1.4e-09 68.2 341 27.3
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 1.8e-09 67.8 301 28.2
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 1.8e-09 67.8 343 30.0
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 2.4e-09 67.4 371 26.7
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 3.1e-09 67.0 357 27.7
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 3.1e-09 67.0 355 26.5
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 6.9e-09 65.9 355 27.0
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 9.0e-09 65.5 284 27.5
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 1.2e-08 65.1 360 26.4
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.2e-08 65.1 289 28.7
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.2e-08 65.1 363 27.3
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 2.0e-08 64.3 369 27.9
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 2.6e-08 63.9 274 29.9
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 4.5e-08 63.2 202 34.2
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 5.8e-08 62.8 363 26.4
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 9.9e-08 62.0 369 29.8
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.3e-07 61.6 334 26.9
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 1.7e-07 61.2 365 26.3
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 2.2e-07 60.8 358 26.3
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 2.2e-07 60.8 336 26.8
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 6.4e-07 59.3 202 34.7
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 8.4e-07 58.9 59 59.3
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 1.9e-06 57.8 351 26.8
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 2.4e-06 57.4 52 65.4
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 3.2e-06 57.0 327 27.2
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 3.2e-06 57.0 370 28.1
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 4.2e-06 56.6 181 33.7
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 7.1e-06 55.8 371 25.3
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 7.1e-06 55.8 74 45.9
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 7.1e-06 55.8 335 27.2


User provided reference genes

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