Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 0.0e+00 1374.4 715 100.0
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 1.1e-240 837.0 751 62.6
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 6.4e-238 827.8 750 62.7
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.1e-237 827.0 736 63.7
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 2.4e-237 825.9 738 62.6
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 4.2e-237 825.1 753 63.3
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 4.6e-236 821.6 746 61.4
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 1.9e-234 816.2 754 61.4
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 4.3e-234 815.1 759 61.7
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.6e-233 813.1 733 62.6
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.1e-232 810.4 750 61.7
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 6.9e-232 807.7 748 61.8
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 7.6e-231 804.3 746 61.9
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.0e-230 803.9 758 60.6
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 8.4e-230 800.8 747 61.3
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 1.4e-229 800.0 735 61.4
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 1.9e-229 799.7 774 59.4
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.2e-228 797.0 774 59.3
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.6e-228 795.0 748 61.2
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.9e-227 792.0 723 61.5
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 2.1e-225 786.2 805 57.4
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 3.1e-224 782.3 741 61.0
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 9.0e-224 780.8 800 56.9
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 1.5e-223 780.0 749 60.6
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.7e-222 776.5 711 61.6
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.9e-221 773.1 717 62.1
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 4.2e-221 771.9 758 57.5
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 9.3e-221 770.8 768 58.1
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 1.3e-219 766.9 730 58.6
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 1.8e-219 766.5 734 59.3
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 8.2e-217 757.7 751 58.9
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 1.4e-216 756.9 726 58.8
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 1.2e-215 753.8 731 58.3
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.6e-215 752.7 767 58.0
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 2.6e-215 752.7 750 58.3
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 7.7e-215 751.1 740 58.5
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 3.8e-214 748.8 729 58.7
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 5.0e-214 748.4 767 57.8
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 2.5e-213 746.1 734 57.6
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.6e-212 743.4 747 57.8
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 6.7e-211 738.0 766 55.9
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 2.0e-210 736.5 844 54.0
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 3.3e-210 735.7 844 53.9
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 8.5e-206 721.1 773 54.3
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 2.5e-205 719.5 758 56.7
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 9.4e-205 717.6 826 51.9
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 9.4e-205 717.6 796 52.9
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 2.1e-204 716.5 805 52.9
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 2.1e-204 716.5 832 51.6
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 7.9e-204 714.5 740 56.6
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 2.6e-202 709.5 754 56.1
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 5.7e-202 708.4 821 51.4
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 1.3e-201 707.2 827 51.1
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 3.7e-201 705.7 641 61.3
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 4.8e-201 705.3 697 59.0
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 6.3e-201 704.9 734 55.3
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.8e-200 703.4 742 55.4
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 1.2e-199 700.7 725 56.3
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 1.2e-199 700.7 768 53.5
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.6e-199 700.3 785 52.9
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 1.6e-199 700.3 841 50.7
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 3.5e-199 699.1 740 54.9
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 1.0e-198 697.6 749 55.4
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 1.0e-198 697.6 805 53.4
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 6.5e-198 694.9 731 55.1
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 6.5e-198 694.9 832 52.0
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.5e-197 693.7 757 54.6
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 3.2e-197 692.6 708 57.6
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 7.2e-197 691.4 819 51.3
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 6.1e-196 688.3 802 51.9
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 1.0e-195 687.6 728 54.9
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 4.0e-195 685.6 726 55.6
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 4.0e-195 685.6 727 53.6
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 1.2e-194 684.1 748 55.3
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 1.3e-193 680.6 661 58.9
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 2.8e-193 679.5 828 50.5
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 4.1e-192 675.6 726 53.6
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 1.2e-191 674.1 771 52.5
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 2.0e-191 673.3 750 52.9
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 1.0e-190 671.0 743 51.8
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 1.3e-190 670.6 722 54.8
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 1.3e-190 670.6 737 52.4
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 5.0e-190 668.7 781 51.6
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 1.5e-189 667.2 745 51.5
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.5e-189 667.2 721 54.5
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 3.2e-189 666.0 702 56.4
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 7.2e-189 664.8 721 54.1
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 1.2e-188 664.1 724 53.7
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 3.6e-188 662.5 820 49.8
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 4.7e-188 662.1 690 55.1
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 8.0e-188 661.4 720 54.3
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 4.0e-187 659.1 755 52.5
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.2e-186 657.5 723 53.1
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 2.0e-186 656.8 720 53.8
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 2.6e-186 656.4 730 53.0
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 5.7e-186 655.2 722 52.5
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 1.7e-185 653.7 728 52.7
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 1.7e-185 653.7 639 57.3
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 2.2e-185 653.3 720 53.9
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 4.1e-184 649.0 598 59.9
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 2.0e-183 646.7 699 56.1
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 6.5e-182 641.7 813 49.6
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 1.5e-181 640.6 746 52.3
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 5.5e-181 638.6 763 50.7
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 5.2e-179 632.1 716 54.1
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 2.0e-178 630.2 728 52.2
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.5e-170 604.0 857 45.3
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 6.2e-164 582.0 705 50.5
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 7.5e-162 575.1 716 51.1
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 9.8e-162 574.7 848 44.1
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 8.3e-161 571.6 622 51.8
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.1e-157 561.2 434 64.7
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 1.5e-157 560.8 839 44.2
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 1.2e-151 541.2 835 43.2
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.1e-149 534.6 656 49.1
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.1e-148 530.4 720 46.1
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 1.2e-140 504.6 756 44.0
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 9.0e-139 498.4 428 61.4
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.3e-132 478.0 754 42.6
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 7.9e-127 458.8 450 56.0
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 3.8e-113 413.3 749 37.9
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 5.1e-102 376.3 472 46.2
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.2e-98 365.2 763 36.6
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 1.1e-93 348.6 519 42.4
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.0e-89 333.2 490 40.4
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.5e-89 332.8 479 40.7
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.9e-88 331.3 482 40.5
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.1e-83 315.5 435 40.9
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.1e-83 313.5 482 38.8
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.1e-83 313.5 482 38.8
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.0e-81 308.9 312 56.4
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.0e-81 306.6 475 38.5
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.2e-80 302.8 501 38.5
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 7.5e-77 292.7 495 39.6
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 5.9e-74 283.1 592 39.5
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.9e-65 254.2 520 38.7
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 1.2e-55 222.2 389 40.6
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 3.1e-54 217.6 194 52.6
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.1e-40 172.6 205 52.7
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.3e-28 132.5 387 34.1
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 1.5e-24 119.0 92 58.7
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 5.4e-19 100.5 366 29.8
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 4.6e-18 97.4 71 66.2
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 6.9e-14 83.6 208 31.2
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 3.4e-13 81.3 78 52.6
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 1.4e-11 75.9 76 53.9
Actinidia08821 Actinidia chinensis HOM05D004705 ORTHO05D005595 9.3e-11 73.2 305 29.8
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 2.3e-09 68.6 68 44.1
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 5.1e-09 67.4 54 53.7
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 5.1e-09 67.4 54 53.7
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 2.5e-08 65.1 53 52.8
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 7.4e-08 63.5 77 39.0
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 6.2e-07 60.5 49 57.1


User provided reference genes

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