Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3484 Punica granatum HOM05D003456 ORTHO05D004082 2.9e-66 255.0 120 100.0
PGR044G1450 Punica granatum HOM05D003456 ORTHO05D004082 1.1e-38 163.3 83 96.4
CiPaw.13G039000 Carya illinoinensis HOM05D003456 ORTHO05D004082 3.1e-36 155.2 83 90.4
Cpa.g.sc56.14 Carica papaya HOM05D003456 ORTHO05D004082 1.2e-35 153.3 83 88.0
QL07p039199 Quercus lobata HOM05D003456 ORTHO05D004082 1.2e-35 153.3 78 92.3
Hma1.2p1_0232F.1_g097840 Hydrangea macrophylla HOM05D003456 ORTHO05D004082 2.0e-35 152.5 83 90.4
Aqoxy1G03742 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 2.6e-35 152.1 82 86.6
CANSAT56G3878 Cannabis sativa HOM05D003456 ORTHO05D004082 2.6e-35 152.1 83 86.7
Cfa016601 Carpinus fangiana HOM05D003456 ORTHO05D004082 2.6e-35 152.1 80 90.0
Haze_19603 Corylus avellana HOM05D003456 ORTHO05D004082 2.6e-35 152.1 80 90.0
Lalb_Chr25g0288351 Lupinus albus HOM05D003456 ORTHO05D004082 2.6e-35 152.1 78 92.3
Dinv21215 Davidia involucrata HOM05D003456 ORTHO05D004082 3.5e-35 151.8 83 88.0
Sabra08G0013700 Salix brachista HOM05D003456 ORTHO05D004082 3.5e-35 151.8 83 86.7
SGA_v2.0_scaffold62G21335 Striga asiatica HOM05D003456 ORTHO05D004082 3.5e-35 151.8 82 89.0
SGA_v2.0_scaffold85G26612 Striga asiatica HOM05D003456 ORTHO05D004082 3.5e-35 151.8 82 89.0
TAR636G2922 Trochodendron aralioides HOM05D003456 ORTHO05D004082 3.5e-35 151.8 78 92.3
Atru.chr8.1550 Acer truncatum HOM05D003456 ORTHO05D004082 4.5e-35 151.4 78 91.0
Psat4g110960 Pisum sativum HOM05D003456 ORTHO05D004082 4.5e-35 151.4 83 86.7
MSTRG.27572 Avicennia marina HOM05D003456 ORTHO05D004082 5.9e-35 151.0 82 89.0
Ca_08885_v3 Cicer arietinum L. HOM05D003456 ORTHO05D004082 5.9e-35 151.0 83 86.7
Lalb_Chr20g0111761 Lupinus albus HOM05D003456 ORTHO05D004082 5.9e-35 151.0 78 89.7
Potri.010G238800 Populus trichocarpa HOM05D003456 ORTHO05D004082 5.9e-35 151.0 83 89.2
AUR62013762 Chenopodium quinoa HOM05D003456 ORTHO05D004082 7.7e-35 150.6 80 90.0
AUR62023392 Chenopodium quinoa HOM05D003456 ORTHO05D004082 7.7e-35 150.6 80 90.0
Duzib128G1248 Durio zibethinus HOM05D003456 ORTHO05D004082 7.7e-35 150.6 85 87.1
ECA233G4183 Erigeron canadensis HOM05D003456 ORTHO05D004082 7.7e-35 150.6 82 89.0
Eucgr.J00259 Eucalyptus grandis HOM05D003456 ORTHO05D004082 7.7e-35 150.6 83 86.7
Lj1g0011692 Lotus japonicus HOM05D003456 ORTHO05D004082 7.7e-35 150.6 79 89.9
Potri.008G020400 Populus trichocarpa HOM05D003456 ORTHO05D004082 7.7e-35 150.6 83 86.7
SalBow6G0063 Salvia bowleyana HOM05D003456 ORTHO05D004082 1.0e-34 150.2 82 86.6
CANSAT56G1853 Cannabis sativa HOM05D003456 ORTHO05D004082 1.3e-34 149.8 83 85.5
FvH4_6g18590 Fragaria vesca HOM05D003456 ORTHO05D004082 1.3e-34 149.8 83 86.7
FAN05G2371 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.3e-34 149.8 83 86.7
FAN14G1410 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.3e-34 149.8 83 86.7
Glyma.03G195000 Glycine max HOM05D003456 ORTHO05D004082 1.3e-34 149.8 78 89.7
MD14G1022300 Malus domestica HOM05D003456 ORTHO05D004082 1.3e-34 149.8 79 87.3
Oeu026593.1 Olea europaea HOM05D003456 ORTHO05D004082 1.3e-34 149.8 81 87.7
Sc09g0005350 Simmondsia chinensis HOM05D003456 ORTHO05D004082 1.3e-34 149.8 83 86.7
GSVIVG01033834001 Vitis vinifera HOM05D003456 ORTHO05D004082 1.3e-34 149.8 78 91.0
Aqoxy2G01205 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 1.7e-34 149.4 83 85.5
Aqoxy3G02826 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 1.7e-34 149.4 82 85.4
Ciclev10017146m.g Citrus clementina HOM05D003456 ORTHO05D004082 1.7e-34 149.4 83 86.7
FAN05G5536 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.7e-34 149.4 83 85.5
FAN09G3852 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.7e-34 149.4 83 86.7
MD12G1035500 Malus domestica HOM05D003456 ORTHO05D004082 1.7e-34 149.4 79 87.3
Prupe.7G111000 Prunus persica HOM05D003456 ORTHO05D004082 1.7e-34 149.4 79 88.6
Sabra10G0187000 Salix brachista HOM05D003456 ORTHO05D004082 1.7e-34 149.4 83 85.5
THA.LOC104804331 Tarenaya hassleriana HOM05D003456 ORTHO05D004082 1.7e-34 149.4 83 84.3
Actinidia34723 Actinidia chinensis HOM05D003456 ORTHO05D004082 2.2e-34 149.1 81 88.9
RcHm_v2.0_Chr3g0473171 Rosa chinensis HOM05D003456 ORTHO05D004082 2.2e-34 149.1 79 88.6
Cpa.g.sc5.27 Carica papaya HOM05D003456 ORTHO05D004082 2.9e-34 148.7 83 85.5
Cc02_g09640 Coffea canephora HOM05D003456 ORTHO05D004082 2.9e-34 148.7 82 85.4
HanXRQChr08g0217241 Helianthus annuus HOM05D003456 ORTHO05D004082 2.9e-34 148.7 81 87.7
Manes.09G055901 Manihot esculenta HOM05D003456 ORTHO05D004082 2.9e-34 148.7 82 85.4
Phvul.001G189600 Phaseolus vulgaris HOM05D003456 ORTHO05D004082 2.9e-34 148.7 78 88.5
TAR633G0109 Trochodendron aralioides HOM05D003456 ORTHO05D004082 2.9e-34 148.7 82 85.4
COL.COLO4_29759 Corchorus olitorius HOM05D003456 ORTHO05D004082 3.8e-34 148.3 85 87.1
FvH4_2g10490 Fragaria vesca HOM05D003456 ORTHO05D004082 3.8e-34 148.3 83 85.5
QL04p044862 Quercus lobata HOM05D003456 ORTHO05D004082 3.8e-34 148.3 82 82.9
RcHm_v2.0_Chr6g0270521 Rosa chinensis HOM05D003456 ORTHO05D004082 3.8e-34 148.3 83 84.3
Thecc.09G106900 Theobroma cacao HOM05D003456 ORTHO05D004082 3.8e-34 148.3 85 87.1
Atru.chr12.1024 Acer truncatum HOM05D003456 ORTHO05D004082 5.0e-34 147.9 83 85.5
arahy.Tifrunner.gnm1.ann1.KEI5RC Arachis hypogaea HOM05D003456 ORTHO05D004082 5.0e-34 147.9 78 88.5
Gohir.D09G011800 Gossypium hirsutum HOM05D003456 ORTHO05D004082 5.0e-34 147.9 83 89.2
Gorai.006G013800 Gossypium raimondii HOM05D003456 ORTHO05D004082 5.0e-34 147.9 83 89.2
EL10Ac1g00743 Beta vulgaris HOM05D003456 ORTHO05D004082 6.5e-34 147.5 83 86.7
Glyma.19G194700 Glycine max HOM05D003456 ORTHO05D004082 6.5e-34 147.5 78 88.5
FAN24G1424 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.1e-33 146.7 83 84.3
Gohir.D04G100300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 1.1e-33 146.7 83 88.0
Gorai.009G403300 Gossypium raimondii HOM05D003456 ORTHO05D004082 1.1e-33 146.7 83 88.0
Sc20g0001150 Simmondsia chinensis HOM05D003456 ORTHO05D004082 1.1e-33 146.7 81 85.2
arahy.Tifrunner.gnm1.ann1.P2449T Arachis hypogaea HOM05D003456 ORTHO05D004082 1.4e-33 146.4 78 87.2
Sopen09g004180 Solanum pennellii HOM05D003456 ORTHO05D004082 1.4e-33 146.4 78 89.7
arahy.Tifrunner.gnm1.ann1.C03M9B Arachis hypogaea HOM05D003456 ORTHO05D004082 1.9e-33 146.0 76 89.5
arahy.Tifrunner.gnm1.ann1.VF2KJZ Arachis hypogaea HOM05D003456 ORTHO05D004082 1.9e-33 146.0 76 89.5
Gohir.A04G063300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 1.9e-33 146.0 83 88.0
PSO407G0116 Papaver somniferum HOM05D003456 ORTHO05D004082 1.9e-33 146.0 78 85.9
Migut.F01607 Erythranthe guttata HOM05D003456 ORTHO05D004082 2.5e-33 145.6 82 81.7
SalBow6G0069 Salvia bowleyana HOM05D003456 ORTHO05D004082 3.2e-33 145.2 84 85.7
TPR.G9901 Trifolium pratense HOM05D003456 ORTHO05D004082 3.2e-33 145.2 77 89.6
TWI53G1385 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 3.2e-33 145.2 76 89.5
unitig_0.g1020 Utricularia gibba HOM05D003456 ORTHO05D004082 4.2e-33 144.8 82 87.8
ATR0789G023 Amborella trichopoda HOM05D003456 ORTHO05D004082 5.5e-33 144.4 83 86.7
BcaB07g31755 Brassica carinata HOM05D003456 ORTHO05D004082 5.5e-33 144.4 81 80.2
A09p11090 Brassica napus HOM05D003456 ORTHO05D004082 5.5e-33 144.4 81 80.2
BraA09t36751Z Brassica rapa HOM05D003456 ORTHO05D004082 5.5e-33 144.4 81 80.2
CAN.G397.10 Capsicum annuum HOM05D003456 ORTHO05D004082 5.5e-33 144.4 78 87.2
ClCG05G018420 Citrullus lanatus HOM05D003456 ORTHO05D004082 7.2e-33 144.1 79 87.3
Lsat_1_v5_gn_8_24141 Lactuca sativa HOM05D003456 ORTHO05D004082 7.2e-33 144.1 78 87.2
Medtr1g060070 Medicago truncatula HOM05D003456 ORTHO05D004082 7.2e-33 144.1 83 81.9
PSO170G1366 Papaver somniferum HOM05D003456 ORTHO05D004082 7.2e-33 144.1 78 84.6
PSO151G0153 Papaver somniferum HOM05D003456 ORTHO05D004082 9.4e-33 143.7 78 84.6
Rhsim03G0097900 Rhododendron simsii HOM05D003456 ORTHO05D004082 9.4e-33 143.7 82 84.1
MELO3C012350.2 Cucumis melo HOM05D003456 ORTHO05D004082 1.2e-32 143.3 79 86.1
TWI74G0284 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 1.2e-32 143.3 84 81.0
BcaC01g02994 Brassica carinata HOM05D003456 ORTHO05D004082 1.6e-32 142.9 79 81.0
A03p45960 Brassica napus HOM05D003456 ORTHO05D004082 1.6e-32 142.9 79 81.0
C03p57360 Brassica napus HOM05D003456 ORTHO05D004082 1.6e-32 142.9 79 81.0
CDE02G3384 Ceratophyllum demersum HOM05D003456 ORTHO05D004082 1.6e-32 142.9 78 85.9
ClCG05G021780 Citrullus lanatus HOM05D003456 ORTHO05D004082 1.6e-32 142.9 79 86.1
Dinv09618 Davidia involucrata HOM05D003456 ORTHO05D004082 1.6e-32 142.9 82 82.9
HanXRQChr12g0368091 Helianthus annuus HOM05D003456 ORTHO05D004082 1.6e-32 142.9 82 85.4
CSS0039541 Camellia sinensis var. sinensis HOM05D003456 ORTHO05D004082 2.1e-32 142.5 82 85.4
Nitab4.5_0011538g0030 Nicotiana tabacum HOM05D003456 ORTHO05D004082 2.1e-32 142.5 81 84.0
Solyc11g006920.2 Solanum lycopersicum HOM05D003456 ORTHO05D004082 2.1e-32 142.5 81 84.0
Sopen11g002830 Solanum pennellii HOM05D003456 ORTHO05D004082 2.1e-32 142.5 81 84.0
PGSC0003DMG400023972 Solanum tuberosum HOM05D003456 ORTHO05D004082 2.1e-32 142.5 81 84.0
Carub.0001s3604 Capsella rubella HOM05D003456 ORTHO05D004082 2.7e-32 142.1 83 79.5
Thhalv10022903m.g Eutrema salsugineum HOM05D003456 ORTHO05D004082 2.7e-32 142.1 83 80.7
BcaB08g34660 Brassica carinata HOM05D003456 ORTHO05D004082 3.6e-32 141.7 80 80.0
CiPaw.09G013300 Carya illinoinensis HOM05D003456 ORTHO05D004082 3.6e-32 141.7 77 89.6
CsaV3_5G035380 Cucumis sativus L. HOM05D003456 ORTHO05D004082 3.6e-32 141.7 79 84.8
Migut.F00877 Erythranthe guttata HOM05D003456 ORTHO05D004082 4.7e-32 141.4 91 78.0
Gohir.A09G013133 Gossypium hirsutum HOM05D003456 ORTHO05D004082 4.7e-32 141.4 80 86.2
Sp3g30040 Schrenkiella parvula HOM05D003456 ORTHO05D004082 4.7e-32 141.4 80 81.2
Sed0026028 Sechium edule HOM05D003456 ORTHO05D004082 6.1e-32 141.0 79 84.8
AL3G49380 Arabidopsis lyrata HOM05D003456 ORTHO05D004082 8.0e-32 140.6 76 84.2
AT2G16710 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 8.0e-32 140.6 76 84.2
Carub.0003s3046 Capsella rubella HOM05D003456 ORTHO05D004082 1.0e-31 140.2 81 79.0
Ciclev10013682m.g Citrus clementina HOM05D003456 ORTHO05D004082 1.0e-31 140.2 101 71.3
Os01g0105800 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 1.0e-31 140.2 76 82.9
Aa31LG8G13940 Aethionema arabicum HOM05D003456 ORTHO05D004082 1.4e-31 139.8 77 80.5
CARHR106940 Cardamine hirsuta HOM05D003456 ORTHO05D004082 1.4e-31 139.8 83 79.5
Zm00001eb126830 Zea mays HOM05D003456 ORTHO05D004082 1.8e-31 139.4 76 82.9
Os12g0485500 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 5.2e-31 137.9 74 82.4
Zm00001eb334200 Zea mays HOM05D003456 ORTHO05D004082 5.2e-31 137.9 76 80.3
Oeu054399.2 Olea europaea HOM05D003456 ORTHO05D004082 8.8e-31 137.1 77 84.4
DCAR_020755 Daucus carota HOM05D003456 ORTHO05D004082 1.5e-30 136.3 77 81.8
Solyc09g009460.4 Solanum lycopersicum HOM05D003456 ORTHO05D004082 1.5e-30 136.3 74 89.2
BraA03t13724Z Brassica rapa HOM05D003456 ORTHO05D004082 4.4e-30 134.8 92 70.7
PSO339G3466 Papaver somniferum HOM05D003456 ORTHO05D004082 1.3e-29 133.3 78 80.8
BcaC04g23009 Brassica carinata HOM05D003456 ORTHO05D004082 1.7e-29 132.9 85 74.1
C09p13080 Brassica napus HOM05D003456 ORTHO05D004082 1.7e-29 132.9 85 74.1
BolC3t18012H Brassica oleracea HOM05D003456 ORTHO05D004082 3.7e-29 131.7 86 72.1
FAN02G4247 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.7e-29 131.7 119 60.5
PGR142G0161 Punica granatum HOM05D003456 ORTHO05D004082 1.1e-28 130.2 74 83.8
Rhsim09G0141900 Rhododendron simsii HOM05D003456 ORTHO05D004082 1.1e-28 130.2 92 75.0
Mapoly0089s0049 Marchantia polymorpha HOM05D003456 ORTHO05D004082 1.4e-28 129.8 70 78.6
vmacro10309 Vaccinium macrocarpon HOM05D003456 ORTHO05D004082 1.4e-28 129.8 74 86.5
Pp3c18_19580 Physcomitrium patens HOM05D003456 ORTHO05D004082 1.8e-28 129.4 70 78.6
AagrBONN_evm.TU.Sc2ySwM_362.959 Anthoceros agrestis HOM05D003456 ORTHO05D004082 3.1e-28 128.6 70 80.0
Peaxi162Scf00290g00816 Petunia axillaris HOM05D003456 ORTHO05D004082 9.1e-28 127.1 65 92.3
CBR_g4764 Chara braunii HOM05D003456 ORTHO05D004082 1.2e-27 126.7 68 79.4
Thecc.05G088300 Theobroma cacao HOM05D003456 ORTHO05D004082 1.3e-26 123.2 74 85.1
SEGI_09582 Sequoiadendron giganteum HOM05D003456 ORTHO05D004082 8.5e-26 120.6 68 79.4
AT2G36260 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 1.5e-25 119.8 71 76.1
PGSC0003DMG402002701 Solanum tuberosum HOM05D003456 ORTHO05D004082 3.2e-25 118.6 60 93.3
RcHm_v2.0_Chr7g0219151 Rosa chinensis HOM05D003456 ORTHO05D004082 4.2e-25 118.2 81 72.8
Nitab4.5_0005483g0040 Nicotiana tabacum HOM05D003456 ORTHO05D004082 9.4e-25 117.1 78 75.6
Cc00_g28380 Coffea canephora HOM05D003456 ORTHO05D004082 2.1e-24 115.9 60 91.7
Cc05_g02390 Coffea canephora HOM05D003456 ORTHO05D004082 2.1e-24 115.9 60 91.7
VMungo1383G3423 Vigna mungo HOM05D003456 ORTHO05D004082 2.7e-24 115.5 59 91.5
Aa31LG5G21390 Aethionema arabicum HOM05D003456 ORTHO05D004082 1.0e-23 113.6 71 67.6
SMO147G0221 Selaginella moellendorffii HOM05D003456 ORTHO05D004082 2.0e-22 109.4 66 68.2
Oeu024811.2 Olea europaea HOM05D003456 ORTHO05D004082 9.7e-22 107.1 113 54.0
MCO14G517 Micromonas commoda HOM05D003456 ORTHO05D004082 1.3e-21 106.7 72 68.1
Gohir.D09G135500 Gossypium hirsutum HOM05D003456 ORTHO05D004082 1.7e-21 106.3 75 73.3
Gorai.006G155500 Gossypium raimondii HOM05D003456 ORTHO05D004082 1.7e-21 106.3 75 73.3
TPR.G4681 Trifolium pratense HOM05D003456 ORTHO05D004082 5.3e-20 101.3 63 76.2
Nitab4.5_0001437g0010 Nicotiana tabacum HOM05D003456 ORTHO05D004082 4.5e-19 98.2 56 82.1
QL07p038879 Quercus lobata HOM05D003456 ORTHO05D004082 1.7e-18 96.3 48 95.8
Psat6g013760 Pisum sativum HOM05D003456 ORTHO05D004082 3.8e-18 95.1 48 93.8
Hund22272 Selenicereus undatus HOM05D003456 ORTHO05D004082 1.9e-17 92.8 48 91.7
Actinidia31104 Actinidia chinensis HOM05D003456 ORTHO05D004082 4.2e-17 91.7 49 89.8
Nn2g14150 Nelumbo nucifera HOM05D003456 ORTHO05D004082 4.2e-17 91.7 48 89.6
DCAR_009160 Daucus carota HOM05D003456 ORTHO05D004082 2.1e-16 89.4 48 83.3
Hund30565 Selenicereus undatus HOM05D003456 ORTHO05D004082 1.4e-15 86.7 51 84.3
Hund30410 Selenicereus undatus HOM05D003456 ORTHO05D004082 3.0e-15 85.5 39 97.4
PGSC0003DMG400023988 Solanum tuberosum HOM05D003456 ORTHO05D004082 5.2e-15 84.7 49 79.6
QL04p047329 Quercus lobata HOM05D003456 ORTHO05D001557 1.5e-14 83.2 44 88.6
C03p57390 Brassica napus HOM05D003456 ORTHO05D004082 7.5e-14 80.9 52 71.2
BolC3t18015H Brassica oleracea HOM05D003456 ORTHO05D004082 7.5e-14 80.9 52 71.2
Cre09.g400775 Chlamydomonas reinhardtii HOM05D003456 ORTHO05D004082 2.2e-13 79.3 48 70.8
CAN.G645.14 Capsicum annuum HOM05D000043 ORTHO05D001371 2.8e-13 79.0 42 85.7
Haze_26136 Corylus avellana HOM05D003456 ORTHO05D004082 8.3e-13 77.4 68 51.5
Haze_27704 Corylus avellana HOM05D003456 ORTHO05D004082 5.9e-11 71.2 68 44.1
Nn6g34911 Nelumbo nucifera HOM05D003456 ORTHO05D004082 5.9e-11 71.2 40 82.5
RcHm_v2.0_Chr6g0245041 Rosa chinensis HOM05D003456 ORTHO05D004082 1.7e-10 69.7 64 57.8
Cfa025191 Carpinus fangiana HOM05D003456 ORTHO05D124956 1.9e-09 66.2 57 50.9
CSS0000169 Camellia sinensis var. sinensis HOM05D003456 ORTHO05D004082 1.0e-07 60.5 46 67.4
Nitab4.5_0001725g0170 Nicotiana tabacum HOM05D003456 ORTHO05D004082 2.3e-07 59.3 32 81.2
Haze_26850 Corylus avellana HOM05D003456 ORTHO05D004082 3.0e-07 58.9 67 37.3
AagrBONN_evm.TU.Sc2ySwM_228.4176 Anthoceros agrestis HOM05D005004 ORTHO05D006097 4.4e-06 55.1 67 35.8
Mapoly0063s0067 Marchantia polymorpha HOM05D002293 ORTHO05D006850 4.4e-06 55.1 70 34.3
TWI77G0413 Tripterygium wilfordii HOM05D005004 ORTHO05D006097 9.8e-06 53.9 68 38.2


User provided reference genes

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