Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 0.0e+00 2532.3 1276 100.0
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 7.7e-218 761.9 1346 37.4
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 5.4e-211 739.2 1307 37.7
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 3.5e-210 736.5 1304 38.7
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 1.7e-209 734.2 1280 39.1
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 2.4e-203 713.8 1249 38.8
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 2.2e-196 690.6 1290 38.1
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 4.4e-189 666.4 1315 36.0
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 1.3e-188 664.8 1272 36.6
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 4.9e-188 662.9 1408 34.9
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 1.0e-185 655.2 1261 35.8
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 3.6e-183 646.7 1306 36.1
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 5.2e-182 642.9 1308 36.1
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 2.4e-174 617.5 1246 35.7
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 3.8e-172 610.1 1264 35.8
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 4.6e-170 603.2 1360 34.3
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 7.9e-170 602.4 1317 34.0
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 1.6e-167 594.7 1445 32.0
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 2.8e-167 594.0 1366 34.6
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 4.0e-166 590.1 1313 34.3
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 5.3e-166 589.7 1318 33.3
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 5.5e-163 579.7 1348 33.8
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 7.1e-163 579.3 1360 33.3
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 1.3e-161 575.1 1263 32.3
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 6.9e-158 562.8 1330 32.6
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 2.6e-157 560.8 1335 33.3
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 4.9e-156 556.6 1342 33.2
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 2.3e-153 547.7 1230 33.5
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 6.7e-153 546.2 1235 34.0
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 1.2e-149 535.4 1282 33.3
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 7.2e-147 526.2 1247 32.4
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 1.2e-146 525.4 1277 32.8
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 1.6e-146 525.0 1334 30.8
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 1.8e-145 521.5 1265 33.0
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 1.1e-142 512.3 1250 32.6
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 1.4e-142 511.9 1376 31.1
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 3.1e-142 510.8 1363 31.6
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 4.1e-142 510.4 1276 31.3
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 5.3e-142 510.0 1263 31.1
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 2.0e-141 508.1 1300 32.6
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 5.9e-141 506.5 1311 30.4
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 1.3e-140 505.4 1327 31.0
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 5.0e-140 503.4 1602 29.8
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 5.0e-140 503.4 1267 32.0
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 6.5e-140 503.1 1301 33.0
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 3.2e-139 500.7 1252 31.9
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 7.2e-139 499.6 1287 31.0
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 2.7e-138 497.7 1339 30.6
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 4.6e-138 496.9 1261 31.8
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 3.9e-137 493.8 1269 32.0
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 3.3e-136 490.7 1359 29.8
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 9.7e-136 489.2 1218 31.7
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 3.7e-135 487.3 1275 31.1
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 4.8e-135 486.9 1320 30.4
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 1.8e-134 485.0 1252 32.0
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 3.4e-133 480.7 1297 29.5
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 5.9e-133 479.9 910 36.7
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 5.9e-133 479.9 1275 30.6
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 2.2e-132 478.0 1324 30.7
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 2.2e-132 478.0 1315 30.6
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 2.2e-132 478.0 1315 30.6
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 5.0e-132 476.9 1302 31.3
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 6.5e-132 476.5 1381 30.0
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 5.5e-131 473.4 1224 31.3
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 2.0e-128 464.9 1356 31.6
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 1.8e-126 458.4 1474 28.5
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 5.3e-126 456.8 1245 29.2
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 9.1e-126 456.1 1243 30.3
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 1.0e-124 452.6 1212 31.8
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 1.3e-124 452.2 1292 30.2
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 7.5e-120 436.4 1256 29.9
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 4.8e-119 433.7 1246 30.1
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 9.1e-118 429.5 1537 27.5
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 2.5e-115 421.4 938 33.3
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 7.2e-115 419.9 1215 30.0
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 1.8e-113 415.2 1579 26.9
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.2e-112 412.5 1256 29.7
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 1.7e-111 408.7 1574 26.7
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 6.5e-108 396.7 1271 28.3
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 5.5e-107 393.7 531 41.6
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 2.1e-106 391.7 1279 28.9
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 3.0e-105 387.9 1057 31.7
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 7.0e-102 376.7 1259 28.7
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 1.5e-99 369.0 1362 27.5
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 2.3e-97 361.7 1493 26.5
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 3.2e-94 351.3 1035 29.5
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 2.5e-91 341.7 1229 27.9
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 9.5e-91 339.7 1332 26.5
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 3.4e-88 331.3 821 32.0
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 8.3e-87 326.6 1222 26.4
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.3e-84 319.3 1222 26.4
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 9.5e-83 313.2 343 46.9
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 1.2e-80 306.2 1282 26.7
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 8.3e-79 300.1 486 38.3
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 1.6e-77 295.8 252 54.8
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 1.9e-75 288.9 275 51.6
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 4.3e-75 287.7 420 37.4
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 8.1e-74 283.5 928 30.6
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.4e-73 282.7 922 30.0
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 9.9e-72 276.6 651 32.1
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 3.1e-65 255.0 409 38.9
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 5.6e-59 234.2 354 41.5
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 7.1e-54 217.2 1249 23.1
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 4.6e-53 214.5 421 30.2
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 8.7e-52 210.3 540 33.9
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.2e-48 199.9 181 53.0
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 2.9e-47 195.3 154 60.4
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 2.9e-47 195.3 154 60.4
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 3.8e-47 194.9 450 34.2
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 2.1e-37 162.5 212 42.0
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 4.6e-37 161.4 107 67.3
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 1.3e-34 153.3 131 52.7
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 2.2e-34 152.5 113 61.9
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 5.9e-32 144.4 106 62.3
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 8.5e-31 140.6 148 49.3
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 2.3e-28 132.5 125 53.6
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 6.3e-26 124.4 82 67.1
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.4e-25 122.5 86 67.4
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 1.2e-21 110.2 127 43.3
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 7.9e-21 107.5 81 64.2
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.8e-20 106.3 162 41.4
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.5e-19 103.2 67 67.2
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 4.8e-18 98.2 67 64.2
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 8.2e-18 97.4 69 62.3
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 2.4e-17 95.9 80 60.0
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 7.0e-17 94.4 99 51.5
SEGI_38362 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 2.5e-14 85.9 139 39.6
MCO07G070 Micromonas commoda HOM05D004942 ORTHO05D005687 6.7e-12 77.8 134 32.8
Eucgr.G02429 Eucalyptus grandis HOM05D004942 ORTHO05D005687 2.0e-11 76.3 66 48.5
SHI10796 Sapria himalayana HOM05D004942 ORTHO05D005687 3.7e-10 72.0 130 35.4
TAR629G0168 Trochodendron aralioides HOM05D004942 ORTHO05D005687 1.0e-07 63.9 101 47.5
TPR.G8934 Trifolium pratense HOM05D004942 ORTHO05D005687 3.8e-07 62.0 110 35.5


User provided reference genes

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