Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 4.8e-129 464.5 238 100.0
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 3.1e-80 302.4 240 66.7
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 1.2e-79 300.4 239 65.7
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 1.2e-79 300.4 234 67.9
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 2.0e-79 299.7 239 65.7
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 4.5e-79 298.5 237 65.8
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 7.7e-79 297.7 237 65.8
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 6.5e-78 294.7 242 68.2
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 3.2e-77 292.4 213 70.4
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 3.2e-77 292.4 236 65.3
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 4.2e-77 292.0 236 65.7
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 1.2e-76 290.4 228 67.1
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 2.1e-76 289.7 238 66.0
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 8.0e-76 287.7 247 64.8
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 1.0e-75 287.3 244 64.8
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.4e-75 287.0 234 63.2
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 1.8e-75 286.6 246 64.2
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 2.3e-75 286.2 242 64.0
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 2.3e-75 286.2 235 66.4
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 6.8e-75 284.6 234 62.8
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 6.8e-75 284.6 234 62.8
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 1.2e-74 283.9 240 62.5
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 2.0e-74 283.1 228 65.8
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 2.6e-74 282.7 229 64.2
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 2.6e-74 282.7 235 63.0
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 2.6e-74 282.7 247 61.5
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 4.4e-74 282.0 242 66.1
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 9.8e-74 280.8 244 62.3
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 1.7e-73 280.0 238 65.5
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 2.8e-73 279.3 240 64.2
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 2.8e-73 279.3 244 65.6
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 2.8e-73 279.3 234 63.7
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 8.3e-73 277.7 242 59.1
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 1.1e-72 277.3 242 60.3
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 1.8e-72 276.6 239 65.3
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 2.4e-72 276.2 240 62.9
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 7.0e-72 274.6 241 59.3
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 9.1e-72 274.2 242 58.7
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 9.1e-72 274.2 238 63.9
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 2.0e-71 273.1 221 67.4
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 3.5e-71 272.3 241 60.6
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 4.5e-71 271.9 235 61.7
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 5.9e-71 271.6 236 66.5
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 1.0e-70 270.8 241 58.9
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.0e-70 270.8 220 65.5
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 1.7e-70 270.0 229 66.4
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 1.7e-70 270.0 229 66.4
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 2.3e-70 269.6 241 59.8
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 2.9e-70 269.2 221 67.0
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 2.9e-70 269.2 229 66.4
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 2.9e-70 269.2 213 65.3
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 3.8e-70 268.9 244 59.4
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 5.0e-70 268.5 236 62.3
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 6.6e-70 268.1 238 61.8
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 3.3e-69 265.8 235 60.4
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 5.5e-69 265.0 216 66.2
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 5.5e-69 265.0 217 62.7
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 7.2e-69 264.6 238 63.0
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 2.1e-68 263.1 212 63.2
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 2.8e-68 262.7 233 62.7
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 2.8e-68 262.7 240 62.5
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 3.6e-68 262.3 235 61.3
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 4.7e-68 261.9 236 61.9
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 4.7e-68 261.9 215 62.3
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 4.7e-68 261.9 242 59.5
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 8.0e-68 261.2 236 59.3
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 8.0e-68 261.2 214 62.6
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.8e-67 260.0 246 59.8
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 1.8e-67 260.0 240 61.7
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 5.2e-67 258.5 235 60.9
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 4.4e-66 255.4 237 60.3
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 5.7e-66 255.0 234 61.5
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 1.3e-65 253.8 258 57.4
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 1.3e-65 253.8 214 61.7
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 2.2e-65 253.1 218 61.0
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 6.3e-65 251.5 213 66.2
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 8.3e-65 251.1 297 53.9
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 1.1e-64 250.8 239 59.0
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 1.4e-64 250.4 233 57.9
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 1.4e-64 250.4 243 62.1
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 1.4e-64 250.4 216 63.0
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 9.2e-64 247.7 236 58.1
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 1.2e-63 247.3 212 62.3
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 3.5e-63 245.7 239 59.8
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 1.3e-62 243.8 218 59.6
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.7e-62 243.4 247 56.3
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 2.3e-62 243.0 212 63.7
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 3.8e-62 242.3 222 59.9
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 5.0e-62 241.9 248 56.0
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 8.6e-62 241.1 209 62.2
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 1.1e-61 240.7 216 59.3
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 2.5e-61 239.6 212 60.4
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 3.3e-61 239.2 234 55.1
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 7.3e-61 238.0 213 62.9
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 9.5e-61 237.7 232 59.1
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 2.1e-60 236.5 236 56.8
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 2.8e-60 236.1 206 59.7
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 4.7e-60 235.3 196 63.3
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 4.7e-60 235.3 222 56.3
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 8.0e-60 234.6 220 58.6
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 3.1e-59 232.6 346 43.6
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 8.9e-59 231.1 232 56.9
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 3.4e-58 229.2 233 55.8
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 7.5e-58 228.0 174 73.6
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 9.8e-58 227.6 232 56.0
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 9.8e-58 227.6 232 56.0
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 1.7e-57 226.9 219 58.9
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.1e-56 224.2 232 55.2
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 3.2e-56 222.6 242 54.1
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 5.4e-56 221.9 240 51.7
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 6.0e-55 218.4 213 54.5
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 3.9e-54 215.7 162 72.8
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 3.9e-54 215.7 196 58.7
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 3.3e-53 212.6 165 67.9
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 9.5e-53 211.1 177 63.3
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.6e-52 210.3 201 57.7
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 2.8e-52 209.5 210 55.2
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 1.4e-51 207.2 194 63.4
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 6.8e-51 204.9 253 48.6
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 3.4e-50 202.6 165 66.1
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 3.7e-49 199.1 199 52.3
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 2.4e-48 196.4 128 75.0
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 6.0e-47 191.8 189 51.9
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 1.0e-46 191.0 189 51.9
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 1.0e-46 191.0 189 51.9
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 6.2e-44 181.8 148 62.8
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 8.1e-44 181.4 130 71.5
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.1e-43 181.0 197 56.3
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 1.2e-42 177.6 207 48.8
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 3.2e-40 169.5 240 43.3
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 9.2e-40 167.9 172 54.1
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 5.6e-37 158.7 362 33.4
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 4.9e-33 145.6 180 48.9
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 6.4e-33 145.2 195 45.6
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 1.4e-32 144.1 181 52.5
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 5.6e-29 132.1 215 40.5
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 2.1e-23 113.6 260 36.2
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 1.6e-20 104.0 111 50.5
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 2.0e-18 97.1 233 33.5
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.1e-16 91.3 107 51.4
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 2.3e-14 83.6 63 63.5
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 1.5e-13 80.9 187 28.9
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 3.3e-13 79.7 249 30.9
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 9.6e-13 78.2 142 40.1
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 1.6e-12 77.4 78 50.0
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 3.7e-12 76.3 60 65.0
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 4.8e-12 75.9 80 52.5
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 2.4e-11 73.6 86 46.5
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 3.4e-10 69.7 43 79.1
SEGI_07437 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 5.8e-10 68.9 95 41.1
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 2.2e-09 67.0 54 64.8
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 6.4e-09 65.5 102 44.1
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 8.4e-09 65.1 199 29.1
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 6.0e-07 58.9 101 45.5
Pp3c7_9780 Physcomitrium patens HOM05D028695 ORTHO05D026632 6.0e-07 58.9 137 37.2
Nitab4.5_0005191g0060 Nicotiana tabacum HOM05D000175 ORTHO05D000481 1.0e-06 58.2 62 43.5
Pp3c2_9790 Physcomitrium patens HOM05D005011 ORTHO05D006443 1.0e-06 58.2 61 49.2
Manes.09G069500 Manihot esculenta HOM05D005011 ORTHO05D006443 1.8e-06 57.4 64 43.8
Nitab4.5_0000621g0080 Nicotiana tabacum HOM05D000175 ORTHO05D000481 2.3e-06 57.0 62 41.9
SHI12530 Sapria himalayana HOM05D005011 ORTHO05D006443 2.3e-06 57.0 64 42.2
MCO02G050 Micromonas commoda HOM05D000175 ORTHO05D000481 3.0e-06 56.6 62 41.9
PRCOL_00000327 Prasinoderma coloniale HOM05D000175 ORTHO05D000481 3.0e-06 56.6 62 43.5
CARHR211770 Cardamine hirsuta HOM05D000175 ORTHO05D000481 3.9e-06 56.2 62 45.2
FAN02G1072 Fragaria x ananassa HOM05D000175 ORTHO05D000481 3.9e-06 56.2 62 43.5
MCO08G161 Micromonas commoda HOM05D000175 ORTHO05D000481 3.9e-06 56.2 61 47.5
Solyc02g077670.3 Solanum lycopersicum HOM05D000175 ORTHO05D000481 3.9e-06 56.2 62 43.5
Sopen02g022570 Solanum pennellii HOM05D000175 ORTHO05D000481 3.9e-06 56.2 62 43.5
PGSC0003DMG400031750 Solanum tuberosum HOM05D000175 ORTHO05D000481 3.9e-06 56.2 62 43.5
unitig_749.g14168 Utricularia gibba HOM05D000175 ORTHO05D000481 3.9e-06 56.2 62 45.2
Aqoxy1G02281 Aquilegia oxysepala HOM05D000175 ORTHO05D000481 5.1e-06 55.8 62 41.9
Peaxi162Scf00845g00119 Petunia axillaris HOM05D000175 ORTHO05D000481 5.1e-06 55.8 62 41.9
Solyc07g053615.1 Solanum lycopersicum HOM05D000175 ORTHO05D000481 5.1e-06 55.8 62 41.9
Sopen07g027570 Solanum pennellii HOM05D000175 ORTHO05D000481 5.1e-06 55.8 62 41.9
PGSC0003DMG400009379 Solanum tuberosum HOM05D000175 ORTHO05D000481 5.1e-06 55.8 62 41.9
arahy.Tifrunner.gnm1.ann1.BXCF5W Arachis hypogaea HOM05D005011 ORTHO05D006443 6.7e-06 55.5 62 40.3
CAN.G209.2 Capsicum annuum HOM05D000175 ORTHO05D000481 6.7e-06 55.5 62 41.9
Lalb_Chr25g0289171 Lupinus albus HOM05D005011 ORTHO05D006443 6.7e-06 55.5 62 41.9
Oeu050925.1 Olea europaea HOM05D000175 ORTHO05D000481 6.7e-06 55.5 62 41.9
PGR042G2661 Punica granatum HOM05D000175 ORTHO05D000481 6.7e-06 55.5 62 41.9
Cc06_g03820 Coffea canephora HOM05D005011 ORTHO05D006443 8.7e-06 55.1 61 45.9
Migut.L01677 Erythranthe guttata HOM05D005011 ORTHO05D006443 8.7e-06 55.1 61 42.6
Glyma.18G201600 Glycine max HOM05D000175 ORTHO05D000481 8.7e-06 55.1 64 40.6
Sp6g40700 Schrenkiella parvula HOM05D000175 ORTHO05D000481 8.7e-06 55.1 62 43.5


User provided reference genes

Program Settings