Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 2.0e-36 155.2 77 100.0
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 2.0e-36 155.2 77 100.0
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 8.4e-27 123.2 75 78.7
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 1.9e-26 122.1 75 76.0
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 4.2e-26 120.9 78 74.4
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 9.3e-26 119.8 77 75.3
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 3.5e-25 117.9 77 72.7
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 7.9e-25 116.7 76 72.4
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 7.9e-25 116.7 76 72.4
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 1.0e-24 116.3 63 84.1
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.3e-24 115.9 78 76.9
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 1.8e-24 115.5 77 72.7
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 2.3e-24 115.2 75 72.0
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 5.1e-24 114.0 80 70.0
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 6.7e-24 113.6 75 68.0
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 6.7e-24 113.6 78 66.7
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 8.7e-24 113.2 78 67.9
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 8.7e-24 113.2 75 68.0
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 1.9e-23 112.1 77 71.4
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 1.9e-23 112.1 80 66.2
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 1.9e-23 112.1 77 67.5
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 3.3e-23 111.3 61 82.0
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 3.3e-23 111.3 76 69.7
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 3.3e-23 111.3 78 66.7
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 4.3e-23 110.9 65 78.5
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 4.3e-23 110.9 75 68.0
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 4.3e-23 110.9 71 73.2
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 4.3e-23 110.9 82 65.9
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 4.3e-23 110.9 76 69.7
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 4.3e-23 110.9 76 69.7
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 5.7e-23 110.5 97 58.8
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 7.4e-23 110.2 85 65.9
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 7.4e-23 110.2 77 70.1
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 7.4e-23 110.2 78 65.4
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 9.6e-23 109.8 78 65.4
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 9.6e-23 109.8 75 68.0
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 1.3e-22 109.4 89 60.7
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 1.3e-22 109.4 76 64.5
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 1.6e-22 109.0 82 65.9
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 1.6e-22 109.0 84 63.1
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 2.1e-22 108.6 72 72.2
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 2.1e-22 108.6 79 63.3
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 2.8e-22 108.2 74 68.9
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 2.8e-22 108.2 70 71.4
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 2.8e-22 108.2 69 71.0
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 2.8e-22 108.2 61 80.3
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 3.7e-22 107.8 67 71.6
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 3.7e-22 107.8 69 69.6
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 3.7e-22 107.8 73 68.5
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 4.8e-22 107.5 85 58.8
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 6.3e-22 107.1 76 67.1
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 8.2e-22 106.7 70 70.0
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 1.1e-21 106.3 70 67.1
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 1.8e-21 105.5 65 70.8
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 4.1e-21 104.4 75 69.3
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 5.3e-21 104.0 77 67.5
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 5.3e-21 104.0 71 66.2
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 5.3e-21 104.0 75 65.3
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 6.9e-21 103.6 62 77.4
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 1.2e-20 102.8 75 64.0
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 1.2e-20 102.8 75 64.0
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 2.0e-20 102.1 76 64.5
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 2.6e-20 101.7 67 68.7
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 2.6e-20 101.7 73 68.5
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 2.6e-20 101.7 74 67.6
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 3.4e-20 101.3 70 62.9
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 7.6e-20 100.1 75 65.3
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 1.3e-19 99.4 94 60.6
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.4e-18 95.9 62 69.4
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 7.2e-18 93.6 72 62.5
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 1.2e-17 92.8 62 67.7
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 1.2e-17 92.8 62 67.7
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 1.6e-17 92.4 63 66.7
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 4.6e-17 90.9 61 65.6
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 4.6e-17 90.9 74 64.9
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 6.1e-17 90.5 112 45.5
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 1.0e-16 89.7 61 67.2
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 1.0e-16 89.7 61 67.2
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.0e-16 89.7 75 61.3
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.0e-16 89.7 61 68.9
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 3.0e-16 88.2 75 53.3
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 3.0e-16 88.2 47 78.7
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 5.1e-16 87.4 70 57.1
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 5.1e-16 87.4 60 68.3
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.1e-15 86.3 62 61.3
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 1.5e-15 85.9 62 61.3
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 1.5e-15 85.9 73 53.4
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.5e-15 85.9 56 64.3
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.5e-15 85.9 71 54.9
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.9e-15 85.5 70 55.7
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 2.5e-15 85.1 75 58.7
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 4.3e-15 84.3 60 66.7
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 4.3e-15 84.3 60 66.7
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 4.3e-15 84.3 60 66.7
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 9.7e-15 83.2 58 67.2
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 1.3e-14 82.8 80 56.2
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 2.8e-14 81.6 62 62.9
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 2.8e-14 81.6 63 63.5
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 3.7e-14 81.3 63 55.6
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 3.7e-14 81.3 77 53.2
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 3.7e-14 81.3 52 73.1
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 8.2e-14 80.1 59 64.4
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 1.1e-13 79.7 56 64.3
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 1.8e-13 79.0 55 69.1
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 3.1e-13 78.2 61 62.3
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 4.1e-13 77.8 57 66.7
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 4.1e-13 77.8 46 69.6
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 6.9e-13 77.0 46 73.9
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 6.9e-13 77.0 63 55.6
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.5e-12 75.9 57 59.6
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 4.5e-12 74.3 58 63.8
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 4.5e-12 74.3 55 65.5
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 4.5e-12 74.3 62 56.5
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 5.9e-12 73.9 70 52.9
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-11 72.4 55 60.0
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 3.8e-11 71.2 57 54.4
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 5.0e-11 70.9 59 57.6
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 8.5e-11 70.1 40 72.5
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 2.5e-10 68.6 44 68.2
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 2.5e-10 68.6 57 54.4
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 4.2e-10 67.8 53 60.4
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 7.2e-10 67.0 78 41.0
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 7.2e-10 67.0 54 53.7
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 4.6e-09 64.3 58 60.3
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 1.4e-08 62.8 98 40.8
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 3.9e-08 61.2 44 56.8
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 1.5e-07 59.3 38 63.2
Mapoly0116s0019 Marchantia polymorpha HOM05D006125 ORTHO05D007404 4.4e-07 57.8 42 52.4
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 4.8e-06 54.3 59 47.5
Potri.004G051201 Populus trichocarpa HOM05D006125 ORTHO05D007404 4.8e-06 54.3 52 46.2
BNapus_Darmor_BZH_scaffold_293p00030 Brassica napus HOM05D006125 ORTHO05D007404 8.2e-06 53.5 40 67.5


User provided reference genes

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