Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 1.3e-58 229.6 120 100.0
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 1.5e-35 152.9 121 61.2
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 8.5e-34 147.1 116 64.7
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 2.5e-33 145.6 120 60.0
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 7.2e-33 144.1 116 62.1
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 1.6e-32 142.9 116 61.2
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 2.1e-32 142.5 122 59.8
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 2.1e-32 142.5 116 61.2
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 3.6e-32 141.7 121 62.8
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 4.7e-32 141.4 118 58.5
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 4.7e-32 141.4 116 61.2
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 4.7e-32 141.4 116 61.2
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 4.7e-32 141.4 116 61.2
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 8.0e-32 140.6 106 65.1
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 1.0e-31 140.2 116 59.5
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 3.0e-31 138.7 116 57.8
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 5.2e-31 137.9 122 58.2
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 5.2e-31 137.9 119 59.7
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 6.7e-31 137.5 117 57.3
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 6.7e-31 137.5 116 58.6
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 6.7e-31 137.5 121 57.0
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 2.0e-30 136.0 115 57.4
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 3.3e-30 135.2 116 58.6
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 4.4e-30 134.8 116 57.8
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 4.4e-30 134.8 122 57.4
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 4.4e-30 134.8 119 58.0
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 5.7e-30 134.4 116 55.2
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 7.4e-30 134.0 118 56.8
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 1.3e-29 133.3 116 55.2
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 1.7e-29 132.9 119 55.5
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.7e-29 132.9 115 58.3
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 1.7e-29 132.9 115 58.3
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 2.2e-29 132.5 120 57.5
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 2.8e-29 132.1 120 54.2
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 2.8e-29 132.1 120 54.2
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 2.8e-29 132.1 120 54.2
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 2.8e-29 132.1 120 54.2
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 2.8e-29 132.1 115 58.3
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 2.8e-29 132.1 117 56.4
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 2.8e-29 132.1 124 54.8
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 3.7e-29 131.7 116 59.5
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 6.3e-29 131.0 123 58.5
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 6.3e-29 131.0 121 57.0
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 6.3e-29 131.0 116 56.0
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 8.2e-29 130.6 120 53.3
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.1e-28 130.2 119 52.9
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 1.1e-28 130.2 105 59.0
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 1.4e-28 129.8 115 58.3
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 1.8e-28 129.4 119 54.6
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 1.8e-28 129.4 123 58.5
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 1.8e-28 129.4 116 56.0
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 1.8e-28 129.4 105 58.1
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 2.4e-28 129.0 118 54.2
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 2.4e-28 129.0 118 54.2
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 4.1e-28 128.3 105 59.0
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 5.3e-28 127.9 120 55.0
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 5.3e-28 127.9 120 55.0
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 7.0e-28 127.5 120 50.8
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 7.0e-28 127.5 119 55.5
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 9.1e-28 127.1 123 55.3
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 1.2e-27 126.7 116 56.9
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 1.2e-27 126.7 119 56.3
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 1.6e-27 126.3 115 53.9
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.6e-27 126.3 115 53.9
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.6e-27 126.3 115 53.9
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.6e-27 126.3 115 53.9
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 1.6e-27 126.3 115 53.0
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 2.6e-27 125.6 109 57.8
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 2.6e-27 125.6 93 67.7
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 4.5e-27 124.8 105 57.1
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 4.5e-27 124.8 116 55.2
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 4.5e-27 124.8 116 57.8
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 7.7e-27 124.0 116 53.4
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 1.0e-26 123.6 95 62.1
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 1.7e-26 122.9 95 63.2
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 2.2e-26 122.5 116 51.7
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 2.2e-26 122.5 116 52.6
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 2.9e-26 122.1 122 52.5
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 3.8e-26 121.7 118 54.2
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 3.8e-26 121.7 93 63.4
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 5.0e-26 121.3 117 55.6
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 5.0e-26 121.3 120 58.3
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 5.0e-26 121.3 120 58.3
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 8.5e-26 120.6 95 62.1
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 8.5e-26 120.6 116 53.4
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 1.1e-25 120.2 94 63.8
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 1.5e-25 119.8 92 64.1
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 9.4e-25 117.1 120 50.0
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 2.7e-24 115.5 121 50.4
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 3.6e-24 115.2 110 54.5
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 6.1e-24 114.4 94 59.6
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 8.0e-24 114.0 120 50.0
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 1.0e-23 113.6 104 55.8
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 1.0e-23 113.6 117 51.3
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 1.8e-23 112.8 122 48.4
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 2.3e-23 112.5 111 55.9
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 3.0e-23 112.1 123 50.4
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 5.2e-23 111.3 90 60.0
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 5.2e-23 111.3 123 52.8
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 5.2e-23 111.3 91 58.2
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 1.2e-22 110.2 120 48.3
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 1.7e-21 106.3 118 44.1
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 3.7e-21 105.1 101 54.5
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 4.8e-21 104.8 115 48.7
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 8.3e-21 104.0 101 53.5
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 9.1e-20 100.5 125 49.6
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 2.7e-19 99.0 118 46.6
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 3.5e-19 98.6 82 57.3
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 7.7e-19 97.4 106 50.9
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 1.0e-18 97.1 96 55.2
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 2.2e-18 95.9 91 52.7
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 2.9e-18 95.5 92 54.3
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 5.0e-18 94.7 116 46.6
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 1.9e-17 92.8 122 46.7
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 4.7e-16 88.2 119 45.4
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 4.8e-13 78.2 101 47.5
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 6.3e-13 77.8 128 42.2
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 1.3e-10 70.1 121 38.0
MELO3C006671.2 Cucumis melo HOM05D006680 ORTHO05D008206 2.8e-08 62.4 53 58.5
SEGI_26321 Sequoiadendron giganteum HOM05D047374 ORTHO05D008206 9.8e-06 53.9 105 34.3


User provided reference genes

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