Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 1.7e-98 362.8 206 100.0
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 3.4e-38 162.5 168 53.0
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 4.4e-38 162.2 161 57.8
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.7e-37 160.2 169 52.7
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 4.5e-35 152.1 211 50.2
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 5.9e-35 151.8 172 51.2
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 7.7e-35 151.4 162 51.2
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.3e-34 150.6 162 53.7
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 2.3e-34 149.8 164 52.4
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 2.3e-34 149.8 199 45.7
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 2.9e-34 149.4 168 53.0
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 1.1e-33 147.5 165 48.5
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 1.1e-33 147.5 167 49.1
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 4.2e-33 145.6 172 47.7
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 9.5e-33 144.4 163 50.9
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.6e-32 143.7 164 44.5
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 2.8e-32 142.9 173 45.7
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 2.8e-32 142.9 176 43.8
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 4.7e-32 142.1 167 46.1
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 1.4e-31 140.6 212 47.2
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.4e-31 140.6 168 48.8
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 1.8e-31 140.2 175 46.3
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.8e-31 140.2 165 44.8
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.8e-31 140.2 164 43.9
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 2.3e-31 139.8 154 51.9
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 3.0e-31 139.4 215 42.3
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.0e-31 139.4 171 50.3
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 3.0e-31 139.4 171 50.3
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 4.0e-31 139.0 170 47.1
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 4.0e-31 139.0 165 45.5
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 5.2e-31 138.7 171 49.7
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 6.8e-31 138.3 194 43.8
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 8.9e-31 137.9 216 46.3
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 8.9e-31 137.9 164 48.2
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 1.5e-30 137.1 199 42.2
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 1.5e-30 137.1 162 45.1
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 2.6e-30 136.3 179 44.7
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 4.4e-30 135.6 171 46.2
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 7.5e-30 134.8 165 45.5
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 1.3e-29 134.0 158 46.2
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 1.3e-29 134.0 176 43.8
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 1.7e-29 133.7 173 43.9
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.7e-29 132.5 168 44.6
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 3.7e-29 132.5 158 45.6
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 4.9e-29 132.1 172 41.9
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 6.3e-29 131.7 166 46.4
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 8.3e-29 131.3 209 42.1
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 8.3e-29 131.3 164 47.6
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.8e-28 130.2 203 39.9
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 1.8e-28 130.2 171 46.2
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.4e-28 129.8 167 44.3
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 3.1e-28 129.4 168 44.0
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 4.1e-28 129.0 162 46.9
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 5.4e-28 128.6 175 44.0
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.0e-28 128.3 203 39.4
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 7.0e-28 128.3 159 45.3
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 2.7e-27 126.3 168 42.9
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.5e-27 125.9 203 38.9
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 4.5e-27 125.6 168 41.1
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 7.8e-27 124.8 160 45.6
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 7.8e-27 124.8 164 45.1
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 7.8e-27 124.8 157 44.6
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 7.8e-27 124.8 160 45.6
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 2.3e-26 123.2 203 38.9
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.9e-26 122.9 203 38.9
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 3.8e-26 122.5 168 42.9
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 3.8e-26 122.5 207 38.6
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 5.0e-26 122.1 163 44.2
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 1.5e-25 120.6 175 40.6
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 1.9e-25 120.2 167 39.5
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 1.9e-25 120.2 171 40.9
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 4.3e-25 119.0 161 44.1
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 9.5e-25 117.9 167 38.9
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 9.5e-25 117.9 163 41.1
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 2.3e-23 113.2 167 38.9
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 2.3e-23 113.2 167 38.9
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 4.0e-23 112.5 173 40.5
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 8.9e-23 111.3 168 37.5
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 8.9e-23 111.3 161 40.4
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 1.2e-22 110.9 151 41.7
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 1.2e-22 110.9 167 37.1
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 2.0e-22 110.2 165 38.8
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 2.0e-22 110.2 162 40.1
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 2.6e-22 109.8 167 40.7
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 3.4e-22 109.4 160 36.9
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 3.4e-22 109.4 160 39.4
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 4.4e-22 109.0 167 38.3
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 1.3e-21 107.5 147 44.2
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.3e-21 107.5 160 38.8
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 1.7e-21 107.1 159 40.3
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 1.7e-21 107.1 158 38.6
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 6.4e-21 105.1 163 36.2
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 6.4e-21 105.1 173 40.5
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 8.3e-21 104.8 167 34.7
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 1.8e-20 103.6 163 38.0
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 1.8e-20 103.6 155 41.3
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 3.2e-20 102.8 157 38.2
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 4.1e-20 102.4 210 35.2
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 5.4e-20 102.1 174 39.1
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 1.2e-19 100.9 169 37.3
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 2.0e-19 100.1 166 36.7
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 2.0e-19 100.1 162 38.9
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 3.5e-19 99.4 165 42.4
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.5e-19 99.4 162 38.3
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 4.6e-19 99.0 161 38.5
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-18 97.8 169 37.3
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 1.3e-18 97.4 159 37.1
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 2.3e-18 96.7 214 30.8
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 3.9e-18 95.9 168 36.9
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 1.2e-16 90.9 165 34.5
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 1.6e-16 90.5 151 35.8
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 2.8e-16 89.7 141 35.5
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 2.8e-16 89.7 162 36.4
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 8.0e-16 88.2 157 37.6
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.8e-15 87.0 151 36.4
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 2.3e-15 86.7 161 36.6
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.1e-15 86.3 118 40.7
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 2.6e-14 83.2 189 32.3
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.5e-14 81.6 118 39.0
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.7e-13 80.5 117 39.3
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.9e-13 79.0 108 40.7
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.3e-13 78.2 140 35.0
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-11 73.9 116 40.5
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 2.7e-11 73.2 107 39.3
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 3.9e-10 69.3 125 36.0
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 6.6e-10 68.6 178 29.8
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 1.1e-09 67.8 52 59.6
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-09 67.0 160 35.6
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-09 67.0 160 35.6
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 6.2e-08 62.0 185 25.9
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 6.2e-08 62.0 117 35.9
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 1.1e-07 61.2 147 29.9
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 1.4e-07 60.8 161 28.0
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 5.2e-07 58.9 63 44.4
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 4.4e-06 55.8 114 31.6
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 7.5e-06 55.1 95 40.0
CSS0041755 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 9.9e-06 54.7 34 73.5


User provided reference genes

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