Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 0.0e+00 2863.2 1483 100.0
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 0.0e+00 1751.1 1509 61.6
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 0.0e+00 1682.5 1511 60.2
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 0.0e+00 1678.7 1514 60.2
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 0.0e+00 1674.1 1496 59.8
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 0.0e+00 1667.1 1512 60.3
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 0.0e+00 1667.1 1526 59.6
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 0.0e+00 1644.4 1489 59.3
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 1635.9 1467 60.3
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1633.2 1512 59.0
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 0.0e+00 1632.1 1514 58.8
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1624.0 1450 59.5
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 0.0e+00 1619.8 1520 58.1
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 0.0e+00 1614.4 1408 61.0
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 0.0e+00 1614.4 1508 59.0
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 0.0e+00 1612.0 1423 59.0
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 0.0e+00 1597.0 1488 57.9
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 0.0e+00 1585.1 1524 57.4
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1574.3 1499 56.2
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 0.0e+00 1573.1 1512 57.9
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1573.1 1507 56.5
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 1569.7 1487 57.4
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 0.0e+00 1565.1 1487 57.5
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 0.0e+00 1522.3 1366 59.7
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 0.0e+00 1495.7 1419 57.5
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 0.0e+00 1483.0 1523 54.5
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 0.0e+00 1447.2 1496 53.3
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 0.0e+00 1439.5 1524 52.3
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 0.0e+00 1436.4 1477 54.5
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 0.0e+00 1436.0 1496 53.0
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 0.0e+00 1431.4 1467 54.1
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1431.0 1544 52.4
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1423.3 1456 54.1
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 0.0e+00 1422.9 1449 54.7
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 0.0e+00 1419.8 1449 54.7
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1418.3 1520 53.0
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1414.4 1515 52.9
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 0.0e+00 1412.9 1477 54.1
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 0.0e+00 1412.1 1522 52.3
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 0.0e+00 1410.6 1447 54.7
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 0.0e+00 1405.2 1473 53.8
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 0.0e+00 1405.2 1500 52.7
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 0.0e+00 1400.2 1555 51.3
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1394.8 1457 54.0
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1377.1 1419 53.9
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 0.0e+00 1370.9 1472 52.4
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1355.5 1526 50.6
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 0.0e+00 1354.0 1457 51.2
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1333.5 1225 59.3
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 0.0e+00 1318.9 1560 49.1
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 0.0e+00 1311.6 1569 49.1
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 0.0e+00 1305.4 1581 48.3
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 0.0e+00 1243.8 1340 52.3
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 0.0e+00 1194.5 1517 48.0
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 0.0e+00 1177.9 1352 51.2
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 2.1e-299 1033.1 1144 51.6
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 5.2e-298 1028.5 1265 46.6
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 2.0e-286 989.9 825 64.0
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 9.5e-276 954.5 1451 39.4
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 1.4e-274 950.7 968 55.2
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 6.3e-272 941.8 1228 44.1
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 6.8e-266 921.8 967 54.0
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 4.4e-265 919.1 1494 38.8
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 9.8e-265 917.9 933 55.1
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 2.0e-262 910.2 1055 47.7
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 1.9e-204 717.6 541 68.8
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 3.8e-192 676.8 1201 36.6
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 3.2e-191 673.7 739 50.7
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 2.1e-182 644.4 531 61.8
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 5.7e-172 609.8 637 55.3
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 2.1e-158 564.7 735 44.9
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 7.3e-151 539.7 948 35.5
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 6.2e-142 510.0 398 64.6
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 3.2e-106 391.3 696 39.4
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 4.8e-70 271.2 229 62.4
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 4.2e-66 258.1 253 56.1
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.7e-57 228.8 193 65.3
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 6.8e-48 197.6 311 40.5
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 1.5e-47 196.4 130 76.9
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-45 189.1 233 43.3
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 7.8e-44 184.1 258 45.3
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 5.0e-43 181.4 150 64.0
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 3.6e-41 175.3 204 48.5
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.3e-35 156.8 160 52.5
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 1.2e-31 143.7 160 49.4
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 1.4e-29 136.7 216 37.0
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 2.0e-23 116.3 124 56.5
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 9.9e-23 114.0 112 49.1
CARHR221650 Cardamine hirsuta HOM05D007170 ORTHO05D009243 6.4e-22 111.3 208 42.3
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 1.1e-21 110.5 112 48.2
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 1.1e-21 110.5 112 48.2
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 4.3e-18 98.6 85 60.0
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 4.7e-17 95.1 135 43.0
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 5.8e-15 88.2 117 46.2
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 1.3e-14 87.0 69 65.2
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 5.4e-13 81.6 53 75.5
Cre10.g453650 Chlamydomonas reinhardtii HOM05D007170 ORTHO05D009243 1.6e-12 80.1 261 26.8
CDE07G1841 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 8.7e-11 74.3 300 23.7
Lj7A482T28 Lonicera japonica HOM05D007170 ORTHO05D009243 7.3e-10 71.2 118 40.7
Zm00001eb008220 Zea mays HOM05D007170 ORTHO05D009243 3.6e-09 68.9 119 31.9
GSVIVG01038403001 Vitis vinifera HOM05D007170 ORTHO05D009243 3.1e-08 65.9 40 77.5
DCAR_001543 Daucus carota HOM05D003337 ORTHO05D003808 6.9e-08 64.7 404 20.3
C03p18330 Brassica napus HOM05D007170 ORTHO05D041508 4.4e-07 62.0 35 77.1
TAR365G0197 Trochodendron aralioides HOM05D000751 ORTHO05D000889 5.8e-07 61.6 47 57.4


User provided reference genes

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