Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 7.3e-212 740.3 386 100.0
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 1.2e-137 493.8 362 69.3
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 2.5e-135 486.1 361 67.9
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 7.2e-135 484.6 362 68.2
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 1.4e-133 480.3 361 67.6
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 8.8e-133 477.6 361 65.9
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 4.4e-132 475.3 366 67.2
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 8.3e-131 471.1 360 67.5
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 7.7e-129 464.5 359 66.3
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 1.0e-128 464.2 361 65.9
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.9e-128 462.6 360 64.4
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 6.5e-128 461.5 361 65.9
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 3.2e-127 459.1 361 66.8
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 3.2e-127 459.1 364 65.1
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 3.2e-127 459.1 364 65.1
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 7.2e-127 458.0 362 63.8
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 9.5e-127 457.6 360 63.6
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 1.6e-126 456.8 363 64.5
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 2.8e-126 456.1 362 66.6
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 2.8e-126 456.1 365 63.6
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.1e-126 454.9 360 63.1
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 1.8e-125 453.4 358 64.5
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 1.8e-125 453.4 361 63.7
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 2.3e-125 453.0 360 63.3
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.3e-125 453.0 360 63.3
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 4.0e-125 452.2 332 68.7
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 5.2e-125 451.8 363 65.0
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 1.5e-124 450.3 361 66.2
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 1.5e-124 450.3 352 65.3
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 1.5e-124 450.3 362 62.4
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 7.5e-124 448.0 360 63.9
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 7.5e-124 448.0 363 64.2
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 7.5e-124 448.0 361 62.6
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 2.8e-123 446.0 361 63.2
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 2.8e-123 446.0 389 61.4
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 8.3e-123 444.5 360 63.3
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 1.4e-122 443.7 359 65.2
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 1.8e-122 443.4 363 62.8
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 1.8e-122 443.4 363 63.4
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 2.4e-122 443.0 359 63.8
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 5.4e-122 441.8 361 63.4
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 7.0e-122 441.4 361 63.2
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 1.2e-121 440.7 349 63.9
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 2.0e-121 439.9 360 63.1
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 4.5e-121 438.7 360 61.9
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 4.5e-121 438.7 361 63.2
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 7.8e-121 438.0 366 63.9
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 1.0e-120 437.6 360 63.1
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.3e-120 437.2 361 62.6
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 3.8e-120 435.6 360 61.9
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 3.8e-120 435.6 364 62.4
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 3.8e-120 435.6 429 55.5
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 2.5e-119 433.0 361 61.2
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 2.5e-119 433.0 361 62.3
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 2.5e-119 433.0 348 62.4
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 9.5e-119 431.0 361 60.1
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 1.2e-118 430.6 361 62.0
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 1.2e-118 430.6 361 62.0
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 3.0e-117 426.0 360 60.3
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 4.0e-117 425.6 347 62.8
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 2.6e-116 422.9 353 60.9
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 5.7e-116 421.8 369 60.7
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 9.8e-116 421.0 364 60.7
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 1.7e-115 420.2 360 58.9
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 2.9e-115 419.5 353 60.1
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 3.7e-115 419.1 364 60.7
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 6.4e-115 418.3 362 58.8
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 6.4e-115 418.3 362 59.4
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.4e-114 417.2 362 59.1
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 2.4e-114 416.4 378 59.3
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 5.4e-114 415.2 351 61.3
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 4.6e-113 412.1 360 59.7
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 7.8e-113 411.4 360 57.2
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 5.0e-112 408.7 362 59.4
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 2.5e-111 406.4 368 58.4
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 7.3e-111 404.8 362 59.1
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 2.8e-110 402.9 361 60.4
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 1.4e-109 400.6 361 57.1
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 1.5e-108 397.1 364 57.1
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 1.5e-108 397.1 363 56.7
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 1.3e-107 394.0 302 66.9
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 1.7e-107 393.7 362 56.6
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 2.9e-107 392.9 334 59.9
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 6.4e-107 391.7 361 55.4
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 8.3e-107 391.3 370 55.9
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 1.9e-106 390.2 370 55.7
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 2.4e-106 389.8 368 58.7
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 7.0e-106 388.3 358 57.0
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 9.2e-106 387.9 363 55.9
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 2.7e-105 386.3 367 58.0
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.6e-104 381.7 299 63.5
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 9.5e-103 377.9 367 55.3
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 2.1e-102 376.7 293 67.2
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 2.8e-102 376.3 367 57.2
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 1.1e-101 374.4 366 55.5
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 1.4e-101 374.0 366 57.4
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 2.3e-101 373.2 366 57.4
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 3.1e-101 372.9 366 53.6
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 3.1e-101 372.9 367 56.7
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 1.2e-100 370.9 366 54.9
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 1.9e-98 363.6 344 58.1
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 8.1e-94 348.2 368 54.3
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.2e-92 344.4 381 48.6
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.5e-92 344.0 386 49.2
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 4.9e-91 339.0 394 47.0
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.1e-82 311.2 265 57.4
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 5.8e-76 288.9 215 64.2
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 1.7e-75 287.3 354 48.6
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.6e-73 280.8 337 43.3
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 7.9e-73 278.5 425 38.4
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 1.5e-71 274.2 392 39.5
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 4.8e-70 269.2 197 67.0
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.9e-67 259.2 192 65.1
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 7.1e-66 255.4 272 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 9.6e-63 245.0 309 43.7
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 6.2e-62 242.3 176 66.5
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.2e-60 238.0 274 47.4
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 6.3e-54 215.7 237 50.2
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 5.0e-43 179.5 130 63.8
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 7.2e-42 175.6 344 32.6
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.7e-40 169.1 121 69.4
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 1.5e-36 157.9 299 35.5
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 8.5e-35 152.1 314 31.8
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 1.0e-32 145.2 106 70.8
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 1.8e-29 134.4 373 28.4
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 9.1e-29 132.1 134 50.0
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 2.5e-26 124.0 166 43.4
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 2.4e-21 107.5 76 64.5
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 1.0e-19 102.1 109 55.0
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 8.5e-19 99.0 84 67.9
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 2.1e-17 94.4 123 43.1
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 1.1e-10 72.0 101 45.5
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 1.5e-10 71.6 49 63.3
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 9.5e-10 68.9 55 67.3
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 8.9e-08 62.4 295 24.4
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 2.0e-07 61.2 153 28.8
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 1.3e-06 58.5 79 40.5
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 2.2e-06 57.8 41 61.0


User provided reference genes

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