Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 4.2e-265 917.5 487 100.0
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 3.2e-148 529.3 439 64.0
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 3.5e-142 509.2 454 59.7
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 1.0e-141 507.7 487 61.0
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 1.3e-141 507.3 486 57.0
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 2.5e-140 503.1 490 56.1
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 1.2e-139 500.7 493 56.6
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 2.1e-139 500.0 491 57.2
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 3.0e-138 496.1 488 55.7
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 5.2e-138 495.4 488 57.0
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 6.7e-138 495.0 487 59.1
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 7.5e-137 491.5 491 56.4
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 3.7e-136 489.2 495 57.6
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 5.3e-135 485.3 494 55.5
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 8.5e-133 478.0 488 54.3
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 8.5e-133 478.0 495 57.2
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 5.5e-132 475.3 406 58.6
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 7.2e-132 474.9 485 54.2
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 9.4e-132 474.6 492 54.5
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.6e-131 473.8 490 56.9
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 3.0e-130 469.5 490 53.1
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 4.0e-130 469.2 492 56.1
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 6.8e-130 468.4 487 55.9
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 6.8e-130 468.4 488 52.0
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 8.8e-130 468.0 502 54.8
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 2.0e-129 466.8 417 59.0
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 2.6e-129 466.5 491 53.4
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 4.4e-129 465.7 444 55.9
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 5.7e-129 465.3 430 56.5
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 1.7e-128 463.8 494 53.6
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 3.7e-128 462.6 499 53.1
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 4.1e-127 459.1 488 52.9
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 5.4e-127 458.8 493 51.5
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 1.7e-125 453.8 487 50.1
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 2.2e-125 453.4 449 53.9
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.9e-125 453.0 391 58.3
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 6.5e-125 451.8 486 51.0
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 8.5e-125 451.4 487 49.9
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 8.5e-125 451.4 487 49.9
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 8.5e-125 451.4 440 54.5
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.1e-124 451.1 442 54.3
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 1.9e-124 450.3 437 52.4
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 1.9e-124 450.3 385 60.0
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 3.2e-124 449.5 367 59.9
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 3.2e-124 449.5 488 52.0
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 7.2e-124 448.4 488 49.4
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 1.2e-123 447.6 488 49.4
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.2e-123 447.6 392 58.2
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 6.1e-123 445.3 497 54.5
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 1.4e-122 444.1 432 57.4
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 3.0e-122 443.0 492 52.4
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 3.0e-122 443.0 403 56.6
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 6.8e-122 441.8 376 57.7
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 8.8e-122 441.4 429 57.3
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 2.0e-121 440.3 487 54.4
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 4.4e-121 439.1 435 53.1
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 4.4e-121 439.1 487 51.7
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 1.7e-120 437.2 435 52.4
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 2.2e-120 436.8 486 50.8
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.1e-119 434.5 429 55.2
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 1.8e-119 433.7 429 54.1
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 3.1e-119 433.0 487 48.7
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 3.1e-119 433.0 487 48.7
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 3.5e-118 429.5 430 55.6
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 4.5e-118 429.1 493 48.5
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 5.9e-118 428.7 441 52.2
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 6.6e-117 425.2 501 47.7
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 6.6e-117 425.2 450 52.7
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 1.1e-116 424.5 427 51.3
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 3.3e-116 422.9 433 50.1
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 4.3e-116 422.5 391 55.0
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 1.2e-115 421.0 491 49.5
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 2.6e-113 413.3 435 49.7
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 9.8e-113 411.4 403 54.1
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 4.9e-112 409.1 452 48.9
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 2.4e-111 406.8 451 49.4
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 7.0e-111 405.2 468 47.9
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 7.0e-111 405.2 422 53.1
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.6e-110 404.1 355 56.9
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.6e-110 404.1 355 56.9
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 3.9e-109 399.4 358 61.2
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 6.6e-109 398.7 473 46.1
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 7.3e-108 395.2 352 55.7
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 1.4e-106 391.0 408 50.7
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.3e-104 384.4 397 49.6
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 1.7e-104 384.0 434 45.6
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 3.0e-101 373.2 406 49.5
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 5.2e-98 362.5 329 53.5
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.3e-96 357.8 351 56.1
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 1.9e-95 354.0 360 51.4
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 1.3e-93 347.8 348 54.3
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 1.4e-90 337.8 390 44.6
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 1.3e-88 331.3 310 51.9
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 3.3e-84 316.6 313 55.0
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 3.2e-79 300.1 272 55.5
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 1.3e-61 241.5 484 33.3
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 7.4e-60 235.7 328 43.9
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 1.6e-59 234.6 407 36.9
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 4.8e-59 233.0 458 32.8
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 8.2e-59 232.3 194 59.3
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 5.3e-58 229.6 370 38.1
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 8.2e-51 205.7 302 44.0
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 3.4e-49 200.3 489 35.2
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 4.5e-49 199.9 188 53.7
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 8.2e-43 179.1 382 34.3
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 6.9e-34 149.4 174 47.1
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 6.9e-34 149.4 171 49.7
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 2.0e-33 147.9 174 47.1
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 5.2e-29 133.3 177 42.4
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 8.8e-13 79.3 84 48.8
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 1.7e-08 65.1 87 62.1
RhsimUnG0226800 Rhododendron simsii HOM05D006774 ORTHO05D008411 2.3e-08 64.7 90 63.3
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 5.0e-08 63.5 85 60.0
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 3.3e-07 60.8 56 55.4
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 4.2e-07 60.5 89 51.7
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 9.5e-07 59.3 89 50.6
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 1.2e-06 58.9 73 43.8


User provided reference genes

Program Settings