Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 2.0e-239 832.0 419 100.0
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 1.4e-128 463.8 428 53.3
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 2.1e-127 459.9 430 56.3
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 4.6e-127 458.8 428 56.1
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 2.5e-125 453.0 429 54.5
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 7.4e-125 451.4 428 53.7
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 2.8e-124 449.5 431 55.2
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 2.8e-124 449.5 428 54.4
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 8.1e-124 448.0 427 54.8
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 3.1e-123 446.0 429 55.2
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 1.9e-120 436.8 428 53.0
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 3.9e-118 429.1 428 53.7
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 9.6e-117 424.5 425 52.7
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 8.2e-116 421.4 427 52.0
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 1.1e-115 421.0 420 51.9
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 1.4e-115 420.6 444 49.8
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 2.4e-115 419.9 430 50.7
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 3.4e-114 416.0 419 50.6
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 5.8e-114 415.2 428 51.4
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 1.0e-113 414.5 429 50.8
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 1.7e-113 413.7 429 50.6
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 3.2e-112 409.5 428 50.0
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 4.2e-112 409.1 428 48.8
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 3.0e-110 402.9 376 54.8
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 3.9e-110 402.5 427 49.9
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 3.9e-110 402.5 425 50.1
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.5e-109 400.6 422 48.3
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 2.8e-108 396.4 423 49.9
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 2.4e-107 393.3 426 49.1
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 5.3e-107 392.1 427 48.5
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 1.2e-106 391.0 429 49.2
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.2e-106 391.0 421 49.6
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 2.6e-106 389.8 426 48.1
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 5.9e-106 388.7 421 49.4
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 7.6e-106 388.3 423 46.8
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 2.2e-105 386.7 427 47.1
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 2.9e-105 386.3 425 48.7
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 2.9e-105 386.3 423 48.9
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 5.0e-105 385.6 427 46.6
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 8.5e-105 384.8 428 48.4
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 1.9e-104 383.6 427 49.9
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 2.5e-104 383.3 444 49.8
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 2.5e-104 383.3 428 47.4
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 2.5e-104 383.3 426 48.6
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.2e-104 382.9 425 46.6
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 1.2e-103 380.9 421 46.3
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 1.2e-103 380.9 445 49.9
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 2.1e-103 380.2 393 50.6
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 4.6e-103 379.0 426 50.0
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 7.9e-103 378.3 425 46.1
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 1.8e-102 377.1 425 46.4
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 1.1e-101 374.4 428 47.4
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.1e-101 374.4 427 47.8
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 1.9e-101 373.6 376 50.0
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 4.3e-101 372.5 415 48.4
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 5.7e-101 372.1 393 48.9
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.7e-100 370.5 422 45.3
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 2.8e-100 369.8 426 48.1
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.7e-100 369.4 425 45.2
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 8.2e-100 368.2 428 47.0
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 8.2e-100 368.2 424 46.5
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 2.4e-99 366.7 433 46.2
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 3.1e-99 366.3 416 47.6
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 5.3e-99 365.5 430 45.8
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 6.9e-99 365.2 433 46.2
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 2.6e-98 363.2 432 46.1
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 3.4e-98 362.8 425 47.5
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 3.4e-98 362.8 419 46.8
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 5.9e-98 362.1 426 45.8
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 7.7e-98 361.7 425 47.3
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 1.0e-97 361.3 419 47.0
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 1.7e-97 360.5 432 45.8
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.7e-97 360.5 400 50.5
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.0e-97 359.0 415 46.7
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 5.0e-97 359.0 424 45.8
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 1.9e-96 357.1 415 46.3
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.5e-96 356.7 426 47.7
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 3.2e-96 356.3 426 47.2
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 3.2e-96 356.3 426 47.2
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 5.5e-96 355.5 431 48.3
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 9.4e-96 354.8 431 45.5
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 6.1e-95 352.1 426 46.7
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 6.1e-95 352.1 468 42.3
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 1.0e-94 351.3 419 45.3
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 3.9e-94 349.4 393 47.6
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 1.1e-93 347.8 368 48.6
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.0e-93 347.1 420 45.0
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 7.4e-93 345.1 467 44.1
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.2e-92 343.6 416 45.0
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 2.8e-92 343.2 357 50.7
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 4.8e-92 342.4 426 45.1
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 3.1e-91 339.7 471 43.5
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 2.2e-89 333.6 419 44.6
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 1.4e-88 330.9 420 43.3
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 7.2e-88 328.6 414 44.9
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 1.2e-87 327.8 386 45.9
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 3.6e-87 326.2 425 44.5
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.1e-87 325.5 418 47.1
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 8.0e-87 325.1 437 43.9
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 8.0e-87 325.1 396 43.7
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 1.7e-84 317.4 403 41.9
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 1.1e-83 314.7 424 42.2
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 2.7e-79 300.1 331 47.1
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 3.3e-77 293.1 366 43.7
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 7.0e-75 285.4 370 45.9
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 7.0e-75 285.4 417 40.8
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 1.7e-73 280.8 408 40.2
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 5.7e-69 265.8 429 38.0
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 9.8e-69 265.0 337 46.9
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 2.4e-67 260.4 429 37.3
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.2e-61 241.5 373 38.1
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 7.0e-59 232.3 384 35.7
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 5.9e-58 229.2 212 55.7
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 6.1e-55 219.2 344 38.1
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 2.0e-53 214.2 383 34.7
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 2.1e-47 194.1 334 36.8
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 8.0e-47 192.2 260 42.3
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 5.4e-43 179.5 168 57.1
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 1.2e-42 178.3 441 30.2
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 2.3e-41 174.1 434 30.2
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 2.5e-40 170.6 181 45.3
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 2.8e-39 167.2 205 42.4
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.4e-38 164.9 397 31.5
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 9.9e-37 158.7 422 28.7
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 3.2e-35 153.7 445 28.1
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 2.7e-34 150.6 474 24.9
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.9e-32 144.4 492 26.0
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 1.9e-32 144.4 431 28.5
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 5.8e-29 132.9 135 46.7
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 7.6e-29 132.5 448 27.5
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.1e-22 112.1 211 35.1
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-22 111.7 471 25.5
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.1e-19 102.1 211 32.2
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 1.2e-13 82.0 76 48.7
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 3.4e-13 80.5 60 56.7
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 3.4e-13 80.5 89 42.7
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 3.0e-09 67.4 62 51.6
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 5.1e-09 66.6 67 53.7
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.7e-07 60.5 58 53.4
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 9.0e-06 55.8 60 43.3


User provided reference genes

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