Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2984 Punica granatum HOM05D007884 ORTHO05D009968 1.4e-241 839.3 474 100.0
Cfa008093 Carpinus fangiana HOM05D007884 ORTHO05D009968 1.4e-79 301.2 370 43.2
QL09p002129 Quercus lobata HOM05D007884 ORTHO05D009968 1.3e-77 294.7 406 42.1
Haze_13924 Corylus avellana HOM05D007884 ORTHO05D009968 3.3e-73 280.0 370 45.7
CiPaw.03G016000 Carya illinoinensis HOM05D007884 ORTHO05D009968 6.9e-71 272.3 368 49.7
CANSAT25G3642 Cannabis sativa HOM05D007884 ORTHO05D009968 1.6e-67 261.2 493 40.0
Prupe.1G544500 Prunus persica HOM05D007884 ORTHO05D009968 2.1e-67 260.8 360 44.4
Potri.019G075900 Populus trichocarpa HOM05D007884 ORTHO05D009968 2.3e-66 257.3 488 37.7
Thecc.08G176500 Theobroma cacao HOM05D007884 ORTHO05D009968 4.8e-64 249.6 442 43.2
Ciclev10019950m.g Citrus clementina HOM05D007884 ORTHO05D009968 2.4e-63 247.3 360 51.1
Nitab4.5_0006974g0020 Nicotiana tabacum HOM05D007884 ORTHO05D009968 4.5e-62 243.0 359 46.2
Eucgr.F02657 Eucalyptus grandis HOM05D007884 ORTHO05D009968 7.7e-62 242.3 406 45.6
Dinv09394 Davidia involucrata HOM05D007884 ORTHO05D009968 2.2e-61 240.7 422 45.3
Sc26g0002320 Simmondsia chinensis HOM05D007884 ORTHO05D009968 2.1e-59 234.2 375 46.7
ClCG10G005030 Citrullus lanatus HOM05D007884 ORTHO05D009968 7.9e-59 232.3 376 43.6
Lj9P699T19 Lonicera japonica HOM05D007884 ORTHO05D009968 1.8e-58 231.1 369 45.8
DCAR_014075 Daucus carota HOM05D007884 ORTHO05D009968 3.9e-58 229.9 353 46.5
Gorai.001G097200 Gossypium raimondii HOM05D007884 ORTHO05D009968 7.4e-57 225.7 444 38.1
TAR383G0946 Trochodendron aralioides HOM05D007884 ORTHO05D009968 7.4e-57 225.7 370 46.2
Gohir.A07G085300 Gossypium hirsutum HOM05D007884 ORTHO05D009968 9.7e-57 225.3 444 37.6
Sed0007017 Sechium edule HOM05D007884 ORTHO05D009968 1.3e-56 224.9 468 34.8
Gohir.D07G090700 Gossypium hirsutum HOM05D007884 ORTHO05D009968 2.2e-56 224.2 444 38.3
Sabra19G0086300 Salix brachista HOM05D007884 ORTHO05D009968 8.2e-56 222.2 451 34.6
Duzib177G0356 Durio zibethinus HOM05D007884 ORTHO05D009968 1.1e-55 221.9 453 41.7
Aqoxy7G02021 Aquilegia oxysepala HOM05D007884 ORTHO05D009968 1.4e-55 221.5 363 44.1
Hma1.2p1_0004F.1_g003780 Hydrangea macrophylla HOM05D007884 ORTHO05D009968 2.4e-55 220.7 459 41.4
CsaV3_4G033680 Cucumis sativus L. HOM05D007884 ORTHO05D009968 3.1e-55 220.3 376 43.1
Actinidia29389 Actinidia chinensis HOM05D007884 ORTHO05D009968 7.0e-55 219.2 338 45.9
COL.COLO4_22419 Corchorus olitorius HOM05D007884 ORTHO05D009968 1.9e-52 211.1 337 45.4
Phvul.003G017800 Phaseolus vulgaris HOM05D007884 ORTHO05D009968 1.9e-52 211.1 366 46.4
Glyma.19G044700 Glycine max HOM05D007884 ORTHO05D009968 7.2e-52 209.1 371 45.8
Cc11_g04640 Coffea canephora HOM05D007884 ORTHO05D009968 9.4e-52 208.8 359 34.5
MELO3C016698.2 Cucumis melo HOM05D007884 ORTHO05D009968 2.1e-51 207.6 325 46.2
TWI75G0081 Tripterygium wilfordii HOM05D007884 ORTHO05D009968 2.1e-51 207.6 384 45.3
VMungo1309G1853 Vigna mungo HOM05D007884 ORTHO05D009968 2.7e-51 207.2 366 46.2
Lj2g0010779 Lotus japonicus HOM05D007884 ORTHO05D009968 3.6e-51 206.8 431 41.5
Ah.05g168770 Amaranthus hybridus HOM05D007884 ORTHO05D009968 6.1e-51 206.1 370 42.2
Psat1g062080 Pisum sativum HOM05D007884 ORTHO05D009968 6.7e-50 202.6 367 43.1
Nitab4.5_0005550g0020 Nicotiana tabacum HOM05D007884 ORTHO05D009968 3.3e-49 200.3 373 42.4
TWI18G0215 Tripterygium wilfordii HOM05D007884 ORTHO05D009968 4.4e-49 199.9 327 39.8
AUR62022398 Chenopodium quinoa HOM05D007884 ORTHO05D009968 1.7e-48 198.0 373 42.4
EL10Ac1g01640 Beta vulgaris HOM05D007884 ORTHO05D009968 2.8e-48 197.2 355 42.5
CSS0033652 Camellia sinensis var. sinensis HOM05D007884 ORTHO05D009968 6.3e-48 196.1 370 43.2
CSS0035845 Camellia sinensis var. sinensis HOM05D007884 ORTHO05D009968 6.3e-48 196.1 370 43.2
RcHm_v2.0_Chr7g0232061 Rosa chinensis HOM05D007884 ORTHO05D009968 6.3e-48 196.1 422 32.9
Oeu023202.1 Olea europaea HOM05D007884 ORTHO05D009968 4.1e-47 193.4 358 43.0
PGSC0003DMG400013578 Solanum tuberosum HOM05D007884 ORTHO05D009968 5.3e-47 193.0 365 42.2
Sopen07g021970 Solanum pennellii HOM05D007884 ORTHO05D009968 3.5e-46 190.3 365 42.2
CAN.G63.2 Capsicum annuum HOM05D007884 ORTHO05D009968 1.0e-45 188.7 359 42.3
MD08G1213200 Malus domestica HOM05D007884 ORTHO05D009968 3.8e-45 186.8 479 36.7
Migut.C01368 Erythranthe guttata HOM05D007884 ORTHO05D009968 5.0e-45 186.4 337 38.9
Medtr6g017035 Medicago truncatula HOM05D007884 ORTHO05D009968 5.0e-45 186.4 407 39.3
MSTRG.1590 Avicennia marina HOM05D007884 ORTHO05D009968 8.5e-45 185.7 387 35.9
FvH4_5g33340 Fragaria vesca HOM05D007884 ORTHO05D009968 7.2e-44 182.6 401 30.4
FAN18G0070 Fragaria x ananassa HOM05D007884 ORTHO05D009968 7.2e-44 182.6 401 30.4
Nn3g17503 Nelumbo nucifera HOM05D007884 ORTHO05D009968 3.6e-43 180.3 411 40.1
Zm00001eb001440 Zea mays HOM05D007884 ORTHO05D009968 4.7e-43 179.9 369 33.6
Cpa.g.sc21.77 Carica papaya HOM05D007884 ORTHO05D009968 1.0e-42 178.7 275 48.7
Nn4g26038 Nelumbo nucifera HOM05D007884 ORTHO05D009968 8.8e-42 175.6 469 37.5
Os03g0119700 Oryza sativa ssp. japonica HOM05D007884 ORTHO05D009968 1.2e-41 175.3 370 32.7
Lalb_Chr02g0158331 Lupinus albus HOM05D007884 ORTHO05D009968 1.5e-41 174.9 371 40.4
SGA_v2.0_scaffold118G32599 Striga asiatica HOM05D007884 ORTHO05D009968 7.5e-41 172.6 378 35.4
HPP92_008446 Vanilla planifolia HOM05D007884 ORTHO05D009968 9.7e-41 172.2 366 41.0
Ca_26346_v3 Cicer arietinum L. HOM05D007884 ORTHO05D009968 2.2e-40 171.0 268 39.2
HanXRQChr17g0559001 Helianthus annuus HOM05D007884 ORTHO05D009968 3.7e-40 170.2 332 41.0
FAN04G3024 Fragaria x ananassa HOM05D007884 ORTHO05D009968 5.3e-39 166.4 358 32.1
PSO242G0004 Papaver somniferum HOM05D007884 ORTHO05D009968 5.3e-39 166.4 371 39.1
Lsat_1_v5_gn_4_133080 Lactuca sativa HOM05D007884 ORTHO05D009968 2.2e-37 161.0 281 35.2
Manes.18G118701 Manihot esculenta HOM05D007884 ORTHO05D009968 4.2e-36 156.8 279 40.9
FAN08G1312 Fragaria x ananassa HOM05D007884 ORTHO05D009968 5.5e-36 156.4 289 34.9
HPP92_008463 Vanilla planifolia HOM05D007884 ORTHO05D009968 1.2e-35 155.2 474 36.3
TPR.G21024 Trifolium pratense HOM05D007884 ORTHO05D009968 8.0e-35 152.5 365 37.3
AUR62043537 Chenopodium quinoa HOM05D007884 ORTHO05D009968 2.0e-30 137.9 276 47.1
MBI04_g00944_MAGBIO Magnolia biondii HOM05D007884 ORTHO05D009968 3.5e-30 137.1 225 36.0
Atru.chr13.2470 Acer truncatum HOM05D007884 ORTHO05D009968 4.5e-30 136.7 281 45.2
CDE04G2395 Ceratophyllum demersum HOM05D007884 ORTHO05D009968 1.6e-27 128.3 254 46.1
ECA232G0955 Erigeron canadensis HOM05D007884 ORTHO05D009968 8.3e-16 89.4 276 36.6
ATR0716G085 Amborella trichopoda HOM05D007884 ORTHO05D009968 3.2e-15 87.4 357 33.6
SEGI_26452 Sequoiadendron giganteum HOM05D007884 ORTHO05D009968 1.9e-12 78.2 365 30.7
CAN.G6574.1 Capsicum annuum HOM05D007884 ORTHO05D009968 1.2e-09 68.9 188 44.7
Hund17562 Selenicereus undatus HOM05D007884 ORTHO05D009968 2.2e-08 64.7 77 45.5


User provided reference genes

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