Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 9.3e-225 783.5 477 100.0
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 4.5e-62 243.0 463 48.6
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 5.5e-60 236.1 446 48.7
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 2.7e-59 233.8 461 47.9
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 1.3e-56 224.9 440 43.9
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 5.4e-55 219.5 440 43.9
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 5.4e-55 219.5 464 38.4
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 1.6e-54 218.0 479 45.5
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 2.0e-54 217.6 461 46.6
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 5.9e-54 216.1 440 40.9
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.7e-53 214.5 465 45.8
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 2.9e-53 213.8 437 35.9
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 8.6e-53 212.2 477 44.4
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 1.1e-52 211.8 466 46.4
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 4.2e-52 209.9 457 46.0
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 4.2e-52 209.9 462 45.0
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 4.2e-52 209.9 464 45.5
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 1.6e-51 208.0 456 45.8
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 3.6e-51 206.8 464 45.0
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 6.1e-51 206.1 464 45.0
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 4.0e-50 203.4 452 38.7
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 1.2e-49 201.8 463 46.2
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 3.4e-49 200.3 478 43.1
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 4.4e-49 199.9 449 34.1
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 2.8e-48 197.2 349 54.7
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 3.7e-48 196.8 478 42.5
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 1.4e-47 194.9 358 53.4
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 9.2e-47 192.2 359 52.9
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 1.2e-46 191.8 474 43.5
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 3.5e-46 190.3 441 43.8
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 3.8e-45 186.8 467 42.2
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 5.0e-45 186.4 350 54.0
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 5.0e-45 186.4 466 44.0
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 1.9e-44 184.5 464 43.3
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 8.0e-43 179.1 367 50.4
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 1.0e-42 178.7 349 52.4
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 1.0e-42 178.7 475 41.9
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 4.4e-41 173.3 479 42.4
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 1.3e-40 171.8 473 42.1
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 8.3e-40 169.1 479 41.5
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 2.4e-39 167.5 354 48.9
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 4.1e-39 166.8 467 42.2
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 7.0e-39 166.0 471 42.7
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 3.5e-38 163.7 352 51.7
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 4.6e-38 163.3 342 52.6
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 5.9e-38 162.9 342 50.3
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 5.9e-38 162.9 354 50.8
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 7.8e-38 162.5 471 42.9
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 1.0e-37 162.2 337 51.9
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 1.7e-37 161.4 203 40.9
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 3.3e-36 157.1 484 42.1
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 7.3e-36 156.0 457 43.1
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 9.5e-36 155.6 459 41.8
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 2.1e-35 154.5 358 48.6
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 3.6e-35 153.7 359 50.4
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 8.9e-34 149.1 482 41.7
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 1.2e-33 148.7 362 47.8
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 4.4e-33 146.7 331 50.8
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 1.7e-32 144.8 448 44.4
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 2.2e-32 144.4 449 40.5
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 2.4e-31 141.0 325 50.8
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 2.4e-31 141.0 325 50.8
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 5.4e-31 139.8 317 53.0
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 9.2e-31 139.0 361 46.5
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 1.0e-29 135.6 361 46.3
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 1.7e-29 134.8 366 45.1
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 2.3e-29 134.4 325 49.8
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 3.0e-29 134.0 325 49.8
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 5.0e-29 133.3 459 38.8
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 3.3e-28 130.6 348 30.2
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 3.3e-28 130.6 449 39.4
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 9.5e-28 129.0 325 48.9
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 1.6e-27 128.3 339 46.0
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 2.1e-27 127.9 334 48.2
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 1.8e-26 124.8 214 40.7
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 5.8e-25 119.8 334 47.6
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 1.0e-21 109.0 163 44.8
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 1.3e-16 92.0 103 41.7
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 4.1e-15 87.0 186 37.6
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 4.1e-15 87.0 105 42.9
CDE04G3331 Ceratophyllum demersum HOM05D000050 ORTHO05D009774 6.2e-11 73.2 177 26.0
HanXRQChr06g0184751 Helianthus annuus HOM05D007725 ORTHO05D009774 2.4e-10 71.2 201 28.4
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 2.0e-09 68.2 48 62.5
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 7.8e-06 56.2 178 32.6


User provided reference genes

Program Settings