Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 4.6e-70 267.7 129 100.0
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 3.0e-21 105.5 133 47.4
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.2e-20 103.6 133 45.1
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 3.4e-20 102.1 127 47.2
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 9.8e-20 100.5 127 45.7
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 1.3e-19 100.1 133 44.4
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 4.9e-19 98.2 133 45.1
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 6.4e-19 97.8 127 47.2
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 1.4e-18 96.7 128 48.4
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 2.4e-18 95.9 131 48.1
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 5.4e-18 94.7 116 44.0
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 2.0e-17 92.8 127 44.1
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 3.9e-16 88.6 115 46.1
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 8.6e-16 87.4 131 42.7
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 7.3e-15 84.3 130 43.1
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.2e-14 83.6 130 42.3
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.1e-14 82.8 131 42.0
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 2.1e-14 82.8 126 42.9
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 3.6e-14 82.0 126 43.7
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 4.7e-14 81.6 131 42.0
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 4.7e-14 81.6 115 39.1
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 6.2e-14 81.3 141 40.4
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 8.0e-14 80.9 121 43.0
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 1.4e-13 80.1 130 41.5
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 1.8e-13 79.7 114 46.5
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 4.0e-13 78.6 115 44.3
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 5.2e-13 78.2 141 39.7
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 6.8e-13 77.8 124 41.1
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 6.8e-13 77.8 124 41.1
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 8.9e-13 77.4 130 41.5
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 1.5e-12 76.6 115 45.2
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 3.4e-12 75.5 120 40.8
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 9.8e-12 73.9 121 40.5
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 1.7e-11 73.2 147 35.4
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 1.7e-11 73.2 115 43.5
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 2.2e-11 72.8 117 37.6
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 2.2e-11 72.8 121 41.3
Haze_08227 Corylus avellana HOM05D006292 ORTHO05D006110 3.7e-11 72.0 118 39.8
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 3.7e-11 72.0 116 44.0
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 1.4e-10 70.1 119 40.3
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 1.4e-10 70.1 117 38.5
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 1.4e-10 70.1 126 38.9
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 1.9e-10 69.7 139 38.1
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 2.4e-10 69.3 126 39.7
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 2.4e-10 69.3 121 38.8
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 3.2e-10 68.9 118 41.5
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 3.2e-10 68.9 124 37.9
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 3.2e-10 68.9 92 43.5
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 3.2e-10 68.9 92 43.5
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 4.1e-10 68.6 121 37.2
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 4.1e-10 68.6 121 37.2
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 4.1e-10 68.6 122 39.3
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 5.4e-10 68.2 119 38.7
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 5.4e-10 68.2 126 35.7
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 5.4e-10 68.2 121 39.7
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 5.4e-10 68.2 121 38.8
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 5.4e-10 68.2 122 39.3
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 5.4e-10 68.2 122 38.5
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 7.0e-10 67.8 117 35.0
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 7.0e-10 67.8 122 41.0
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 7.0e-10 67.8 122 41.0
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 9.2e-10 67.4 119 40.3
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 9.2e-10 67.4 92 42.4
Nn6g33587 Nelumbo nucifera HOM05D006292 ORTHO05D006110 1.2e-09 67.0 99 40.4
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 1.2e-09 67.0 117 35.9
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 1.2e-09 67.0 122 36.9
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 1.6e-09 66.6 138 37.0
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 1.6e-09 66.6 121 36.4
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 1.6e-09 66.6 121 36.4
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 1.6e-09 66.6 121 36.4
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 1.6e-09 66.6 120 39.2
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 1.6e-09 66.6 126 36.5
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 1.6e-09 66.6 122 36.9
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.0e-09 66.2 121 35.5
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 2.7e-09 65.9 138 38.4
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 2.7e-09 65.9 127 39.4
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 2.7e-09 65.9 127 39.4
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 2.7e-09 65.9 127 39.4
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.7e-09 65.9 122 39.3
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.7e-09 65.9 122 39.3
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 2.7e-09 65.9 121 38.0
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 3.5e-09 65.5 121 37.2
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 7.8e-09 64.3 127 38.6
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 7.8e-09 64.3 121 36.4
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 7.8e-09 64.3 127 38.6
Cfa012441 Carpinus fangiana HOM05D006292 ORTHO05D006110 7.8e-09 64.3 117 37.6
Sed0013806 Sechium edule HOM05D011808 ORTHO05D006110 1.0e-08 63.9 119 33.6
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 1.7e-08 63.2 114 35.1
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 5.0e-08 61.6 124 34.7
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 6.6e-08 61.2 121 38.0
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 8.6e-08 60.8 128 33.6
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 1.1e-07 60.5 124 35.5
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 1.1e-07 60.5 137 35.0
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 1.1e-07 60.5 121 33.1
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 2.5e-07 59.3 128 33.6
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 4.3e-07 58.5 115 37.4
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 5.6e-07 58.2 119 37.0
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 9.5e-07 57.4 122 36.1
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 2.1e-06 56.2 122 35.2
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 2.1e-06 56.2 125 35.2
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 2.1e-06 56.2 128 35.9
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 2.1e-06 56.2 128 35.2
Oeu017028.1 Olea europaea HOM05D006292 ORTHO05D006110 2.8e-06 55.8 127 37.8
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 3.6e-06 55.5 123 31.7
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 3.6e-06 55.5 125 32.8
Phvul.010G051800 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 4.7e-06 55.1 137 33.6
Sp2g11580 Schrenkiella parvula HOM05D011808 ORTHO05D006110 4.7e-06 55.1 136 36.8
SpUn0036_0030 Schrenkiella parvula HOM05D011808 ORTHO05D006110 4.7e-06 55.1 136 36.8
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 6.2e-06 54.7 134 29.9
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 6.2e-06 54.7 125 32.0


User provided reference genes

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