Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 2.7e-129 465.3 229 100.0
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 1.2e-126 456.4 229 97.4
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 6.2e-126 454.1 229 97.4
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 1.1e-125 453.4 229 97.4
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.4e-125 453.0 229 96.5
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 1.8e-125 452.6 229 96.9
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 3.1e-125 451.8 229 96.1
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 3.1e-125 451.8 229 96.5
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 9.0e-125 450.3 229 96.1
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.2e-124 449.9 229 95.6
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 2.6e-124 448.7 229 95.6
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.4e-124 448.4 226 96.5
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 3.4e-124 448.4 226 96.5
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 3.4e-124 448.4 229 95.2
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 4.4e-124 448.0 229 96.5
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 4.4e-124 448.0 229 95.2
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 7.6e-124 447.2 229 95.6
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.3e-123 446.4 226 96.0
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 2.2e-123 445.7 229 95.6
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 2.2e-123 445.7 229 94.8
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 2.9e-123 445.3 229 94.8
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 2.9e-123 445.3 229 94.3
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 2.9e-123 445.3 229 94.8
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 3.8e-123 444.9 229 94.8
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 3.8e-123 444.9 229 93.9
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 3.8e-123 444.9 229 95.6
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 4.9e-123 444.5 227 94.3
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 4.9e-123 444.5 227 94.3
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 6.4e-123 444.1 229 95.2
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 6.4e-123 444.1 229 93.9
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 8.4e-123 443.7 229 93.4
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 94.3
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 93.4
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 93.9
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 94.3
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 1.4e-122 443.0 229 93.4
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.4e-122 443.0 227 95.2
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.4e-122 443.0 229 93.0
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 1.9e-122 442.6 227 94.3
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 2.4e-122 442.2 229 93.0
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 2.4e-122 442.2 229 94.8
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 3.2e-122 441.8 229 94.3
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 4.2e-122 441.4 227 94.7
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 4.2e-122 441.4 228 94.7
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 5.4e-122 441.0 229 92.6
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 5.4e-122 441.0 229 94.3
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 7.1e-122 440.7 229 93.4
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 7.1e-122 440.7 229 92.6
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 1.2e-121 439.9 229 93.0
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 1.6e-121 439.5 227 93.0
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 2.7e-121 438.7 229 94.3
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 2.7e-121 438.7 229 93.4
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 4.6e-121 438.0 229 92.1
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 2.3e-120 435.6 229 92.6
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 3.9e-120 434.9 227 92.1
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 2.5e-119 432.2 228 91.7
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 4.3e-119 431.4 229 91.3
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 7.3e-119 430.6 227 91.6
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 1.6e-118 429.5 220 93.6
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 2.1e-118 429.1 227 91.2
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.1e-118 429.1 227 91.2
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 3.6e-118 428.3 229 90.4
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 3.6e-118 428.3 229 90.8
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 1.1e-117 426.8 228 90.8
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.4e-117 425.6 227 89.0
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 5.3e-117 424.5 229 91.7
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 6.9e-117 424.1 227 89.0
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 1.2e-116 423.3 229 90.4
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 2.0e-116 422.5 227 90.7
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 2.6e-116 422.2 229 90.0
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 3.4e-116 421.8 227 89.4
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 1.7e-115 419.5 227 89.9
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 1.7e-115 419.5 227 89.9
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 1.7e-115 419.5 227 89.9
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 1.7e-115 419.5 227 89.9
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 1.7e-115 419.5 227 89.9
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 3.8e-115 418.3 227 89.4
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 6.4e-115 417.5 229 91.3
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 1.9e-114 416.0 227 88.1
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 4.2e-114 414.8 227 88.1
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 7.1e-114 414.1 236 86.9
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 1.2e-113 413.3 229 88.2
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 2.1e-113 412.5 227 88.1
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 2.1e-113 412.5 227 87.7
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 2.7e-113 412.1 229 85.2
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 3.5e-113 411.8 226 86.7
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 4.6e-113 411.4 227 87.2
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 6.0e-113 411.0 227 87.2
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 7.9e-113 410.6 227 87.2
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 7.9e-113 410.6 229 84.7
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 1.0e-112 410.2 226 86.7
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 2.3e-112 409.1 227 86.8
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 8.7e-112 407.1 227 86.8
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 2.5e-111 405.6 228 85.5
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 4.3e-111 404.8 254 80.3
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 1.3e-110 403.3 227 85.0
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 1.6e-110 402.9 227 84.6
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 3.7e-110 401.7 204 96.1
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 8.4e-107 390.6 203 94.6
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 1.9e-106 389.4 202 93.1
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 3.2e-106 388.7 229 84.3
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 4.2e-106 388.3 227 79.7
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 1.8e-104 382.9 201 92.5
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.5e-103 379.8 229 77.7
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.5e-103 379.8 229 77.7
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 8.2e-102 374.0 229 78.2
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 5.3e-101 371.3 210 82.9
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 9.0e-101 370.5 191 96.3
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 9.0e-101 370.5 227 74.4
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 1.5e-100 369.8 190 96.3
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 1.0e-99 367.1 190 94.2
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 1.0e-99 367.1 233 81.1
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.4e-98 363.2 250 75.2
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 1.9e-98 362.8 200 88.5
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 9.3e-98 360.5 187 94.7
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 1.2e-97 360.1 219 82.2
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.0e-96 357.1 191 91.1
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 6.7e-96 354.4 227 76.7
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 1.9e-95 352.8 185 94.6
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 1.3e-94 350.1 227 77.5
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 4.1e-93 345.1 226 70.8
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 1.9e-90 336.3 185 87.0
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 1.6e-89 333.2 226 74.8
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 1.5e-84 316.6 161 95.0
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 5.0e-83 311.6 164 92.7
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 1.0e-80 303.9 355 49.6
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 9.1e-77 290.8 159 87.4
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 6.3e-70 268.1 159 78.0
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.0e-59 234.2 120 91.7
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.9e-58 229.9 131 80.9
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 9.4e-58 227.6 154 69.5
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 4.1e-37 159.1 140 59.3
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.3e-27 127.5 71 87.3
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 5.2e-24 115.5 78 66.7
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 1.1e-18 97.8 154 40.9
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 1.9e-18 97.1 124 49.2
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 3.4e-15 86.3 45 84.4
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 1.3e-14 84.3 66 63.6
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 8.4e-14 81.6 52 67.3
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 4.2e-13 79.3 80 50.0
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 6.6e-11 72.0 49 73.5
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 8.1e-09 65.1 82 50.0
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 5.8e-07 58.9 26 100.0


User provided reference genes

Program Settings