Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 0.0e+00 1092.0 552 100.0
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 7.9e-260 900.2 551 81.7
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 9.0e-256 886.7 570 79.5
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 3.4e-255 884.8 550 80.9
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 7.6e-255 883.6 550 81.6
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 1.7e-254 882.5 551 80.8
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 2.2e-254 882.1 551 80.2
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 5.5e-253 877.5 551 79.5
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 7.1e-253 877.1 550 79.5
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 2.7e-252 875.2 551 79.9
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 6.1e-252 874.0 549 79.2
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 1.0e-251 873.2 550 78.5
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 1.3e-251 872.8 595 75.6
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 1.8e-251 872.5 551 80.2
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 1.8e-251 872.5 567 77.8
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 1.9e-250 869.0 555 80.2
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 9.7e-250 866.7 555 78.6
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 1.6e-249 865.9 556 78.8
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 3.7e-249 864.8 579 76.5
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 1.4e-248 862.8 562 77.6
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 1.4e-248 862.8 550 80.4
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.8e-248 862.4 550 78.0
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 4.5e-247 857.8 551 78.0
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 2.2e-246 855.5 536 78.5
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 3.8e-246 854.7 563 76.9
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 1.1e-245 853.2 566 77.2
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 1.4e-245 852.8 550 78.4
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 1.4e-245 852.8 550 77.1
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.9e-245 852.4 550 77.6
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 2.5e-245 852.0 550 77.3
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 3.2e-245 851.7 548 78.5
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 5.5e-245 850.9 551 76.2
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 7.2e-245 850.5 550 76.5
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 3.6e-244 848.2 550 76.0
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 1.4e-243 846.3 548 78.3
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 3.0e-243 845.1 577 74.2
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 3.9e-243 844.7 556 76.3
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 1.1e-242 843.2 575 75.3
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 3.3e-242 841.6 532 78.8
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 5.7e-242 840.9 553 75.4
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 9.7e-242 840.1 548 78.3
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 2.8e-241 838.6 559 76.2
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 6.3e-241 837.4 511 81.2
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 1.1e-240 836.6 550 75.1
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 1.4e-240 836.3 550 75.3
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 1.4e-240 836.3 550 75.6
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 3.1e-240 835.1 555 75.0
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 4.1e-240 834.7 552 75.9
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 5.3e-240 834.3 550 75.5
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 9.1e-240 833.6 550 76.0
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 1.2e-239 833.2 515 80.4
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 2.6e-239 832.0 548 75.2
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 3.4e-239 831.6 598 72.2
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 1.3e-238 829.7 554 74.7
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 1.7e-238 829.3 495 81.8
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 2.2e-238 828.9 549 75.2
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 2.5e-237 825.5 549 75.4
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 4.2e-237 824.7 551 75.1
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 7.2e-237 823.9 596 72.0
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 1.0e-235 820.1 487 82.1
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 1.8e-235 819.3 550 74.4
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 4.8e-233 811.2 564 74.1
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 9.1e-232 807.0 550 72.7
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 2.0e-231 805.8 666 65.5
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 2.6e-231 805.4 537 75.4
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 2.9e-230 802.0 588 71.1
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 3.2e-229 798.5 552 72.5
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 3.2e-229 798.5 493 79.3
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 7.2e-229 797.3 539 74.6
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 9.4e-229 797.0 549 73.0
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 1.6e-228 796.2 558 71.7
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 8.0e-228 793.9 510 78.2
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 4.0e-227 791.6 553 71.8
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 8.8e-227 790.4 457 85.1
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 2.0e-226 789.3 559 71.0
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 4.2e-221 771.5 609 67.0
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 3.0e-219 765.4 517 75.2
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 1.2e-218 763.5 494 77.5
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 8.5e-214 747.3 540 71.7
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 3.2e-213 745.3 563 69.8
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 5.5e-213 744.6 442 82.1
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 3.6e-212 741.9 596 64.9
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 6.1e-212 741.1 551 70.2
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 1.5e-210 736.5 533 71.7
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 1.5e-210 736.5 549 71.4
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.4e-208 729.9 588 66.7
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 3.1e-208 728.8 491 73.9
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 6.1e-204 714.5 478 75.7
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 3.0e-203 712.2 485 75.3
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 2.6e-202 709.1 484 70.7
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 9.8e-202 707.2 483 71.4
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 2.4e-200 702.6 440 78.2
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 3.1e-195 685.6 487 72.9
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 6.6e-190 667.9 553 65.6
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 1.2e-188 663.7 557 63.9
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 1.1e-187 660.6 485 64.7
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.7e-185 653.3 441 72.3
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 4.3e-181 638.6 510 62.0
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 1.2e-180 637.1 513 65.5
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 3.4e-178 629.0 437 71.2
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 3.7e-177 625.5 525 60.0
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 7.8e-175 617.8 470 67.7
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 2.4e-168 596.3 550 59.3
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.7e-166 590.1 342 86.5
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 3.3e-165 585.9 455 68.4
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 1.0e-158 564.3 486 58.2
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 3.9e-158 562.4 486 58.8
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 1.8e-155 553.5 371 78.2
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 2.1e-148 530.0 321 83.2
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 1.0e-142 511.1 320 78.8
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 5.3e-139 498.8 293 86.7
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 1.3e-134 484.2 481 48.4
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 3.8e-121 439.5 271 82.7
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 8.5e-113 411.8 442 51.8
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 9.1e-107 391.7 390 57.7
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 1.6e-106 391.0 258 74.4
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 2.0e-101 374.0 228 82.0
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 3.5e-90 336.7 210 82.4
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 3.0e-86 323.6 212 75.0
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 9.5e-80 302.0 183 83.1
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 1.6e-79 301.2 211 71.6
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 5.8e-77 292.7 198 71.7
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 2.2e-76 290.8 211 67.3
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 2.9e-76 290.4 472 37.7
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 2.2e-60 237.7 137 78.1
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 7.3e-56 222.6 139 78.4
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 5.2e-54 216.5 253 50.2
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 3.9e-49 200.3 453 32.0
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 8.7e-49 199.1 184 55.4
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 2.7e-42 177.6 356 34.0
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.1e-38 165.6 134 63.4
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 1.4e-38 165.2 89 83.1
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 1.4e-38 165.2 89 83.1
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.2e-34 152.1 146 56.2
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 1.3e-31 142.1 113 69.0
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 4.5e-29 133.7 123 58.5
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 6.7e-25 119.8 69 79.7
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 8.7e-25 119.4 148 50.7
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 5.7e-24 116.7 65 87.7
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 1.0e-20 105.9 67 77.6
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 1.7e-20 105.1 125 47.2
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 2.9e-20 104.4 117 48.7
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.9e-20 104.4 64 79.7
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 3.8e-20 104.0 138 46.4
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 8.5e-20 102.8 80 62.5
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 9.3e-19 99.4 52 88.5
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 7.9e-18 96.3 56 82.1
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 4.3e-16 90.5 103 53.4
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 2.9e-12 77.8 58 70.7
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 3.2e-11 74.3 63 57.1
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 4.4e-08 63.9 90 43.3
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 7.4e-08 63.2 46 69.6
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 9.7e-08 62.8 72 48.6
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 2.2e-07 61.6 51 60.8
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 6.3e-07 60.1 79 41.8
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 6.9e-06 56.6 38 65.8
arahy.Tifrunner.gnm1.ann1.G7A5RV Arachis hypogaea HOM05D004684 ORTHO05D083069 9.1e-06 56.2 38 65.8


User provided reference genes

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