Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 2.9e-117 425.2 216 100.0
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 1.1e-60 237.3 217 59.4
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 4.4e-57 225.3 216 56.0
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 7.5e-57 224.6 213 56.3
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 9.8e-57 224.2 215 57.2
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 2.2e-56 223.0 216 58.8
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 1.4e-55 220.3 213 55.4
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 9.2e-55 217.6 216 53.7
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 1.2e-54 217.2 216 53.7
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.6e-54 216.9 205 56.6
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 1.6e-54 216.9 214 57.0
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 2.7e-54 216.1 210 57.1
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 3.5e-54 215.7 211 58.3
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 4.6e-54 215.3 217 55.3
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 1.0e-53 214.2 210 57.1
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 1.3e-53 213.8 216 55.6
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 1.7e-53 213.4 209 56.0
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 5.1e-53 211.8 213 55.9
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 6.6e-53 211.5 218 54.1
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 1.5e-52 210.3 205 56.6
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 1.5e-52 210.3 210 55.7
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 3.3e-52 209.1 210 53.8
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 5.6e-52 208.4 210 54.8
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 5.6e-52 208.4 218 56.0
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 7.3e-52 208.0 209 54.5
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 1.6e-51 206.8 214 55.1
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 3.6e-51 205.7 214 54.7
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 3.6e-51 205.7 218 52.8
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 8.1e-51 204.5 210 53.3
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.1e-50 204.1 217 52.1
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 5.2e-50 201.8 217 53.0
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 5.2e-50 201.8 207 52.2
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 6.8e-50 201.4 210 55.2
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 8.9e-50 201.1 203 53.7
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 8.9e-50 201.1 210 53.3
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 1.2e-49 200.7 219 53.0
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 2.0e-49 199.9 229 50.2
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 2.6e-49 199.5 167 61.7
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.6e-49 199.5 217 52.1
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 4.4e-49 198.7 216 50.9
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 7.6e-49 198.0 212 54.2
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 1.3e-48 197.2 209 52.2
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 2.9e-48 196.1 216 50.5
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 6.4e-48 194.9 169 59.2
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 4.1e-47 192.2 209 50.7
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 4.1e-47 192.2 216 51.4
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 5.4e-47 191.8 209 50.7
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 5.4e-47 191.8 207 51.7
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 9.2e-47 191.0 215 52.1
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 1.2e-46 190.7 181 55.8
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.2e-46 190.7 209 51.2
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 1.6e-46 190.3 216 49.1
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 1.3e-45 187.2 214 50.0
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 1.7e-45 186.8 210 51.0
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 3.0e-45 186.0 216 50.0
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.1e-44 184.1 216 47.2
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 5.6e-44 181.8 215 46.0
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 5.6e-44 181.8 210 51.0
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 9.6e-44 181.0 173 53.2
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 9.6e-44 181.0 173 53.2
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 1.2e-43 180.6 219 49.8
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 1.6e-43 180.3 213 50.2
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 2.8e-43 179.5 216 48.6
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 3.6e-43 179.1 216 48.6
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 1.1e-42 177.6 182 52.7
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.1e-42 177.6 216 45.8
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 1.1e-42 177.6 207 46.4
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 1.1e-42 177.6 169 52.7
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 1.4e-42 177.2 211 45.5
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 2.4e-42 176.4 218 49.1
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 4.0e-42 175.6 217 49.8
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 5.2e-42 175.3 216 46.8
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 8.9e-42 174.5 184 54.3
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 1.5e-41 173.7 215 46.5
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 1.9e-39 166.8 167 50.3
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 2.4e-39 166.4 215 42.8
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 9.3e-39 164.5 215 42.8
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 2.7e-38 162.9 208 49.5
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 4.6e-38 162.2 203 46.3
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 4.6e-38 162.2 179 50.8
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 1.0e-37 161.0 214 46.3
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 2.3e-37 159.8 215 45.1
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 5.1e-37 158.7 212 44.8
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 5.1e-37 158.7 219 46.1
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.1e-36 157.5 145 56.6
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 2.5e-36 156.4 214 43.9
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 4.3e-36 155.6 217 43.8
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 9.6e-36 154.5 208 43.8
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 9.6e-36 154.5 299 37.1
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 2.8e-35 152.9 215 43.3
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 4.8e-35 152.1 142 57.0
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 6.2e-35 151.8 208 43.8
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 8.1e-35 151.4 201 45.8
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.1e-34 151.0 142 57.0
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.8e-34 150.2 165 51.5
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 3.1e-34 149.4 209 44.5
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 3.1e-34 149.4 205 47.8
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 6.9e-34 148.3 207 44.4
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 2.6e-33 146.4 144 53.5
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 2.6e-33 146.4 207 40.6
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 1.3e-32 144.1 231 39.8
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 1.7e-32 143.7 141 54.6
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 2.2e-32 143.3 207 43.0
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 2.9e-32 142.9 154 51.3
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 1.1e-31 141.0 194 46.4
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 1.1e-31 141.0 171 48.5
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.9e-31 140.2 184 45.1
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 3.2e-31 139.4 172 47.7
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 4.2e-31 139.0 180 43.9
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 5.4e-31 138.7 205 39.5
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 3.5e-30 136.0 181 45.9
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 4.6e-30 135.6 196 41.8
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.8e-29 133.7 173 45.1
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 1.8e-29 133.7 190 43.2
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.0e-29 132.9 172 43.0
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 3.0e-29 132.9 147 49.0
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 5.1e-29 132.1 176 41.5
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 5.1e-29 132.1 182 46.2
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 5.1e-29 132.1 192 38.0
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 8.7e-29 131.3 207 40.6
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 1.9e-28 130.2 206 40.3
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.3e-28 129.4 186 40.3
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 3.3e-28 129.4 186 40.9
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 5.6e-28 128.6 170 41.8
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 7.4e-28 128.3 150 46.0
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 1.6e-27 127.1 113 57.5
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 2.1e-27 126.7 207 38.6
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 2.1e-27 126.7 183 44.3
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 3.6e-27 125.9 170 41.2
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 8.1e-27 124.8 174 40.2
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 4.0e-26 122.5 141 44.7
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 2.6e-25 119.8 134 50.0
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 9.9e-25 117.9 129 48.1
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 1.3e-24 117.5 142 43.7
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 2.9e-24 116.3 111 58.6
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 6.4e-24 115.2 83 68.7
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 1.1e-23 114.4 135 47.4
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 2.4e-23 113.2 134 47.8
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.9e-21 105.9 129 49.6
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 5.1e-21 105.5 124 46.8
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 8.7e-21 104.8 125 41.6
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 1.9e-20 103.6 206 35.0
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.3e-20 102.8 77 62.3
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 4.8e-19 99.0 101 56.4
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 1.5e-17 94.0 162 34.6
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 2.0e-17 93.6 141 41.1
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 2.0e-17 93.6 79 58.2
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 4.2e-15 85.9 181 30.9
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 2.7e-14 83.2 96 49.0
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.9e-12 77.0 234 33.3
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 3.3e-12 76.3 177 32.8
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 5.7e-12 75.5 109 40.4
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.3e-11 74.3 78 48.7
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 1.3e-11 74.3 221 35.7
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 1.3e-11 74.3 64 57.8
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 1.6e-11 73.9 96 43.8
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 6.3e-11 72.0 113 38.1
BolC6t36282H Brassica oleracea HOM05D000499 ORTHO05D002825 1.8e-10 70.5 95 42.1
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 2.4e-10 70.1 87 50.6
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 5.3e-10 68.9 87 50.6
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 5.3e-10 68.9 126 34.1
Dinv31495 Davidia involucrata HOM05D004603 ORTHO05D005244 3.4e-09 66.2 73 53.4
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 7.6e-09 65.1 88 39.8
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 3.8e-08 62.8 97 40.2
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 5.0e-08 62.4 90 38.9
AT1G34550 Arabidopsis thaliana HOM05D000499 ORTHO05D002825 1.4e-07 60.8 97 39.2
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 5.5e-07 58.9 115 34.8
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 7.2e-07 58.5 98 29.6
MCO07G134 Micromonas commoda HOM05D004603 ORTHO05D005244 9.3e-07 58.2 69 43.5


User provided reference genes

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