Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2719 Punica granatum HOM05D003913 ORTHO05D004803 1.2e-118 430.6 388 100.0
Dinv13071 Davidia involucrata HOM05D003913 ORTHO05D004803 8.1e-94 348.2 392 66.3
Dinv44716 Davidia involucrata HOM05D003913 ORTHO05D004803 4.0e-93 345.9 392 68.1
CsaV3_6G002750 Cucumis sativus L. HOM05D003913 ORTHO05D004803 4.3e-87 325.9 390 85.1
Potri.019G087200 Populus trichocarpa HOM05D003913 ORTHO05D004803 9.6e-87 324.7 392 83.4
MELO3C024997.2 Cucumis melo HOM05D003913 ORTHO05D004803 1.1e-85 321.2 390 84.4
ClCG08G002560 Citrullus lanatus HOM05D003913 ORTHO05D004803 1.4e-85 320.9 393 84.2
Actinidia29569 Actinidia chinensis HOM05D003913 ORTHO05D004803 2.4e-85 320.1 393 84.2
Prupe.8G049100 Prunus persica HOM05D003913 ORTHO05D004803 3.1e-85 319.7 381 85.6
Sed0012824 Sechium edule HOM05D003913 ORTHO05D004803 9.0e-85 318.2 393 75.8
Manes.02G188000 Manihot esculenta HOM05D003913 ORTHO05D004803 5.8e-84 315.5 395 82.0
Sed0004416 Sechium edule HOM05D003913 ORTHO05D004803 7.6e-84 315.1 393 84.0
Ciclev10008663m.g Citrus clementina HOM05D003913 ORTHO05D004803 6.4e-83 312.0 389 83.0
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 7.9e-81 305.1 381 56.4
FvH4_5g22350 Fragaria vesca HOM05D003913 ORTHO05D004803 1.3e-80 304.3 388 82.2
FAN18G2025 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.3e-80 304.3 388 82.2
FAN18G2798 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.3e-80 304.3 388 82.2
RcHm_v2.0_Chr7g0210071 Rosa chinensis HOM05D003913 ORTHO05D004803 3.0e-80 303.1 378 84.1
FAN08G0696 Fragaria x ananassa HOM05D003913 ORTHO05D004803 7.4e-79 298.5 378 83.1
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 9.6e-79 298.1 390 51.0
Atru.chr13.1880 Acer truncatum HOM05D003913 ORTHO05D004803 4.8e-78 295.8 394 81.0
MD07G1041000 Malus domestica HOM05D003913 ORTHO05D004803 8.2e-78 295.0 381 81.9
MD02G1272000 Malus domestica HOM05D003913 ORTHO05D004803 1.4e-77 294.3 391 81.3
Aqoxy1G00206 Aquilegia oxysepala HOM05D003913 ORTHO05D004803 9.0e-77 291.6 379 78.6
TWI12G0147 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 1.2e-76 291.2 394 80.7
Lj2C196T3 Lonicera japonica HOM05D003913 ORTHO05D004803 4.5e-76 289.3 395 56.7
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 2.5e-74 283.5 391 51.7
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 3.2e-74 283.1 391 62.1
CARHR290910 Cardamine hirsuta HOM05D003913 ORTHO05D004803 5.5e-74 282.3 396 67.9
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 5.5e-74 282.3 391 65.7
PSO541G3150 Papaver somniferum HOM05D003913 ORTHO05D004803 1.2e-73 281.2 359 85.2
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 2.7e-73 280.0 391 51.2
FvH4_2g12470 Fragaria vesca HOM05D003913 ORTHO05D004803 1.3e-72 277.7 381 81.1
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 1.8e-72 277.3 379 59.4
RcHm_v2.0_Chr6g0272901 Rosa chinensis HOM05D003913 ORTHO05D004803 3.0e-72 276.6 380 80.5
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 5.1e-72 275.8 390 48.5
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 8.7e-72 275.0 408 55.9
Potri.013G116900 Populus trichocarpa HOM05D003913 ORTHO05D004803 8.7e-72 275.0 402 69.4
FAN24G0738 Fragaria x ananassa HOM05D003913 ORTHO05D004803 3.3e-71 273.1 381 80.6
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 4.3e-71 272.7 408 63.0
Lj4A109T49 Lonicera japonica HOM05D003913 ORTHO05D004803 4.3e-71 272.7 393 77.4
Oeu053831.1 Olea europaea HOM05D003913 ORTHO05D004803 4.3e-71 272.7 396 71.0
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 7.4e-71 271.9 390 47.9
CANSAT25G1043 Cannabis sativa HOM05D003913 ORTHO05D004803 9.7e-71 271.6 393 77.6
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.3e-70 271.2 414 68.1
Sabra13G0099000 Salix brachista HOM05D003913 ORTHO05D004803 1.3e-70 271.2 392 77.8
TAR625G1217 Trochodendron aralioides HOM05D003913 ORTHO05D004803 1.3e-70 271.2 393 77.6
Nitab4.5_0000366g0190 Nicotiana tabacum HOM05D003913 ORTHO05D004803 2.8e-70 270.0 398 75.4
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 2.8e-70 270.0 348 57.2
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 3.7e-70 269.6 422 58.1
TWI75G1061 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 3.7e-70 269.6 392 76.3
CSS0047372 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 6.3e-70 268.9 385 77.4
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 8.2e-70 268.5 422 49.8
CiPaw.15G007000 Carya illinoinensis HOM05D003913 ORTHO05D004803 5.3e-69 265.8 388 71.6
BcaB03g15621 Brassica carinata HOM05D003913 ORTHO05D004803 7.7e-68 261.9 391 65.7
Solyc07g008860.3 Solanum lycopersicum HOM05D003913 ORTHO05D004803 2.2e-67 260.4 398 74.6
PGSC0003DMG400028735 Solanum tuberosum HOM05D003913 ORTHO05D004803 2.2e-67 260.4 398 74.1
Sopen07g004790 Solanum pennellii HOM05D003913 ORTHO05D004803 2.9e-67 260.0 398 74.6
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 3.8e-67 259.6 383 47.3
Lsat_1_v5_gn_9_43060 Lactuca sativa HOM05D003913 ORTHO05D004803 1.4e-66 257.7 393 74.6
A07p37990 Brassica napus HOM05D003913 ORTHO05D004803 5.5e-66 255.8 395 63.0
AL2G31420 Arabidopsis lyrata HOM05D003913 ORTHO05D004803 1.2e-65 254.6 388 66.0
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 1.2e-65 254.6 388 47.4
SalBow7G2889 Salvia bowleyana HOM05D003913 ORTHO05D004803 1.2e-65 254.6 397 63.5
MSTRG.9615 Avicennia marina HOM05D003913 ORTHO05D004803 2.1e-65 253.8 397 69.8
Nn3g16733 Nelumbo nucifera HOM05D003913 ORTHO05D004803 4.6e-65 252.7 385 74.8
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 4.6e-65 252.7 394 49.2
BcaC08g46615 Brassica carinata HOM05D003913 ORTHO05D004803 7.9e-65 251.9 395 65.1
GSVIVG01015205001 Vitis vinifera HOM05D003913 ORTHO05D004803 2.3e-64 250.4 394 57.9
BolC6t39643H Brassica oleracea HOM05D003913 ORTHO05D004803 3.9e-64 249.6 394 65.5
Rhsim04G0038100 Rhododendron simsii HOM05D003913 ORTHO05D004803 3.9e-64 249.6 415 71.3
ECA232G2276 Erigeron canadensis HOM05D003913 ORTHO05D004803 8.8e-64 248.4 390 72.8
C06p45910 Brassica napus HOM05D003913 ORTHO05D004803 9.7e-63 245.0 382 65.7
Gorai.010G129100 Gossypium raimondii HOM05D003913 ORTHO05D004803 2.2e-62 243.8 388 48.5
Sp5g26870 Schrenkiella parvula HOM05D003913 ORTHO05D004803 3.7e-62 243.0 396 63.4
SpUn0020_0100 Schrenkiella parvula HOM05D003913 ORTHO05D004803 3.7e-62 243.0 396 63.4
Gohir.D06G113300 Gossypium hirsutum HOM05D003913 ORTHO05D004803 8.2e-62 241.9 388 48.2
BraA07t31364Z Brassica rapa HOM05D003913 ORTHO05D004803 1.8e-61 240.7 385 64.9
PSO675G8150 Papaver somniferum HOM05D003913 ORTHO05D004803 2.4e-61 240.4 385 76.6
Cc11_g02860 Coffea canephora HOM05D003913 ORTHO05D004803 3.1e-61 240.0 393 67.9
Aa31LG4G8790 Aethionema arabicum HOM05D003913 ORTHO05D004803 4.1e-61 239.6 410 62.0
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 4.1e-61 239.6 384 39.6
Gohir.A06G109200 Gossypium hirsutum HOM05D003913 ORTHO05D004803 4.1e-61 239.6 359 50.7
BcaC08g45753 Brassica carinata HOM05D003913 ORTHO05D004803 5.9e-60 235.7 398 62.3
MBI10_g42737_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 7.7e-60 235.3 345 82.0
HanXRQChr11g0320411 Helianthus annuus HOM05D003913 ORTHO05D004803 1.0e-59 235.0 392 71.7
Thhalv10018505m.g Eutrema salsugineum HOM05D003913 ORTHO05D004803 1.3e-59 234.6 385 64.2
SGA_v2.0_scaffold114G31919 Striga asiatica HOM05D003913 ORTHO05D004803 1.9e-58 230.7 343 74.3
THA.LOC104826775 Tarenaya hassleriana HOM05D003913 ORTHO05D004803 1.9e-58 230.7 384 63.8
Gohir.A09G169700 Gossypium hirsutum HOM05D003913 ORTHO05D004803 2.5e-58 230.3 388 46.1
Hund19608 Selenicereus undatus HOM05D003913 ORTHO05D004803 4.2e-58 229.6 429 62.9
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 9.4e-58 228.4 379 39.1
Ah.03g146560 Amaranthus hybridus HOM05D003913 ORTHO05D004803 2.1e-57 227.3 385 74.3
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 3.9e-56 223.0 395 37.5
GSVIVG01001592001 Vitis vinifera HOM05D003913 ORTHO05D004803 5.1e-56 222.6 392 70.4
Sabra19G0097800 Salix brachista HOM05D003913 ORTHO05D004803 6.7e-56 222.2 398 72.9
VMungo0720G0336 Vigna mungo HOM05D003913 ORTHO05D004803 6.7e-56 222.2 400 57.8
AT1G71840 Arabidopsis thaliana HOM05D003913 ORTHO05D004803 8.8e-56 221.9 388 62.4
DCAR_000644 Daucus carota HOM05D003913 ORTHO05D004803 1.1e-55 221.5 380 46.6
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 1.1e-55 221.5 369 37.4
CDE08G0059 Ceratophyllum demersum HOM05D003913 ORTHO05D004803 4.4e-55 219.5 383 62.1
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.3e-54 218.0 276 55.1
Sabra19G0101300 Salix brachista HOM05D003913 ORTHO05D004803 1.7e-54 217.6 398 70.9
EL10Ac6g15251 Beta vulgaris HOM05D003913 ORTHO05D004803 5.3e-53 212.6 395 70.6
Cfa018220 Carpinus fangiana HOM05D003913 ORTHO05D004803 9.1e-53 211.8 341 76.0
AUR62017935 Chenopodium quinoa HOM05D003913 ORTHO05D004803 2.2e-51 207.2 397 61.7
COL.COLO4_13734 Corchorus olitorius HOM05D003913 ORTHO05D004803 8.5e-51 205.3 337 51.0
Sc16g0003970 Simmondsia chinensis HOM05D003913 ORTHO05D004803 8.5e-51 205.3 338 74.9
ATR0001G003 Amborella trichopoda HOM05D003913 ORTHO05D004803 1.5e-50 204.5 343 46.4
Oeu053830.1 Olea europaea HOM05D003913 ORTHO05D004803 1.5e-50 204.5 396 63.6
Rhsim06G0087400 Rhododendron simsii HOM05D003913 ORTHO05D004803 1.2e-49 201.4 488 59.0
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 3.6e-49 199.9 328 46.0
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 6.1e-49 199.1 397 46.6
Os03g0685600 Oryza sativa ssp. japonica HOM05D003913 ORTHO05D004803 8.0e-49 198.7 385 60.0
Zm00001eb362180 Zea mays HOM05D003913 ORTHO05D004803 1.4e-48 198.0 387 52.2
Hma1.2p1_0276F.1_g111300 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 2.0e-47 194.1 314 73.9
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 3.3e-47 193.4 409 38.4
Pp3c14_20020 Physcomitrium patens HOM05D003913 ORTHO05D004803 9.7e-47 191.8 403 65.0
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 1.1e-45 188.3 288 41.0
FAN20G2057 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.4e-45 188.0 303 57.1
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 1.8e-45 187.6 392 33.4
Zm00001eb139680 Zea mays HOM05D003913 ORTHO05D004803 2.4e-45 187.2 386 61.1
Carub.0002s1860 Capsella rubella HOM05D003913 ORTHO05D004803 9.1e-45 185.3 388 59.3
vmacro21210 Vaccinium macrocarpon HOM05D003913 ORTHO05D004803 2.0e-44 184.1 415 59.3
Migut.J01123 Erythranthe guttata HOM05D003913 ORTHO05D004803 5.9e-44 182.6 402 35.8
HPP92_008098 Vanilla planifolia HOM05D003913 ORTHO05D004803 2.2e-43 180.6 384 62.8
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 2.9e-43 180.3 372 34.4
Haze_17883 Corylus avellana HOM05D003913 ORTHO05D004803 2.5e-42 177.2 488 58.0
Migut.I00088 Erythranthe guttata HOM05D003913 ORTHO05D004803 2.5e-42 177.2 401 46.1
Eucgr.E02330 Eucalyptus grandis HOM05D003913 ORTHO05D004803 3.2e-42 176.8 284 75.4
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 6.1e-41 172.6 405 31.9
Cpa.g.sc2399.1 Carica papaya HOM05D003913 ORTHO05D004803 3.0e-40 170.2 285 78.2
DCAR_004603 Daucus carota HOM05D000366 ORTHO05D000437 3.4e-39 166.8 107 78.5
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 5.7e-39 166.0 391 33.5
TAR381G0993 Trochodendron aralioides HOM05D003913 ORTHO05D004803 9.8e-39 165.2 277 76.9
COL.COLO4_03395 Corchorus olitorius HOM05D003913 ORTHO05D004803 1.7e-38 164.5 111 74.8
Mapoly0155s0005 Marchantia polymorpha HOM05D003913 ORTHO05D004803 4.8e-38 162.9 397 38.5
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 4.8e-38 162.9 266 38.3
Glyma.09G057500 Glycine max HOM05D003913 ORTHO05D004803 1.1e-37 161.8 164 52.4
AUR62003626 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.8e-37 161.0 386 65.8
Migut.D01748 Erythranthe guttata HOM05D003913 ORTHO05D004803 2.4e-37 160.6 344 66.3
Glyma.10G218600 Glycine max HOM05D003913 ORTHO05D004803 4.1e-37 159.8 113 69.9
SEGI_39165 Sequoiadendron giganteum HOM05D003913 ORTHO05D004803 4.1e-37 159.8 385 57.4
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 1.6e-36 157.9 104 76.9
MBI10_g41322_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 2.0e-36 157.5 108 71.3
CANSAT11G1897 Cannabis sativa HOM05D003913 ORTHO05D004803 3.8e-35 153.3 101 76.2
AagrBONN_evm.TU.Sc2ySwM_368.376 Anthoceros agrestis HOM05D003913 ORTHO05D004803 8.0e-33 145.6 400 56.5
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.4e-32 144.8 378 29.6
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 5.7e-31 139.4 330 30.3
AUR62001664 Chenopodium quinoa HOM05D003913 ORTHO05D004803 2.7e-28 130.6 343 28.6
Hma1.2p1_0276F.1_g111310 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 5.9e-28 129.4 112 61.6
Thecc.09G236800 Theobroma cacao HOM05D003913 ORTHO05D004803 5.0e-27 126.3 379 29.8
Lj4C56G20 Lonicera japonica HOM05D003913 ORTHO05D004803 6.1e-25 119.4 213 37.1
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 1.2e-23 115.2 124 49.2
SMO347G0114 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 1.2e-23 115.2 390 33.8
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 1.2e-23 115.2 346 26.9
PSO455G0073 Papaver somniferum HOM05D003913 ORTHO05D004803 1.7e-22 111.3 62 82.3
SMO343G0013 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 9.2e-21 105.5 376 26.1
Psat6g021120 Pisum sativum HOM05D003913 ORTHO05D004803 3.5e-20 103.6 120 46.7
BolC6t38649H Brassica oleracea HOM05D003913 ORTHO05D004803 2.1e-17 94.4 147 38.8
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 3.6e-17 93.6 401 26.9
SHI13909 Sapria himalayana HOM05D003913 ORTHO05D004803 4.7e-17 93.2 94 52.1
Medtr7g079470 Medicago truncatula HOM05D003913 ORTHO05D004803 1.0e-16 92.0 64 68.8
Medtr7g111550 Medicago truncatula HOM05D003913 ORTHO05D004803 2.6e-15 87.4 105 45.7
MCO10G384 Micromonas commoda HOM05D003913 ORTHO05D004803 2.6e-15 87.4 367 41.1
BraA02t06789Z Brassica rapa HOM05D003913 ORTHO05D004803 2.2e-14 84.3 52 71.2
A02p17440 Brassica napus HOM05D003913 ORTHO05D004803 8.3e-14 82.4 52 69.2
CBR_g49506 Chara braunii HOM05D003913 ORTHO05D004803 1.4e-13 81.6 396 55.1
Glyma.17G173200 Glycine max HOM05D003913 ORTHO05D004803 2.0e-12 77.8 42 78.6
CSS0010217 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 1.8e-08 64.7 38 78.9
BolC6t38648H Brassica oleracea HOM05D003420 ORTHO05D003970 4.0e-08 63.5 58 50.0
BolC6t38646H Brassica oleracea HOM05D003913 ORTHO05D004803 6.8e-08 62.8 150 30.7


User provided reference genes

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