Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1723.0 865 100.0
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1462.2 867 85.2
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1375.1 859 81.8
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1374.0 836 83.3
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1367.1 838 82.8
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1366.7 836 82.8
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1366.7 865 81.2
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1366.3 836 83.5
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1360.1 838 82.7
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1359.4 857 81.2
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1358.2 836 83.0
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1356.7 865 80.6
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1356.3 857 80.7
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1355.5 836 82.9
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1354.7 836 82.8
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1352.0 842 82.1
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1351.3 837 82.0
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1349.0 836 82.5
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1346.6 838 82.0
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1346.3 838 82.0
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1345.9 848 80.9
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1345.9 836 82.4
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1345.9 838 82.0
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1344.7 836 81.9
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1343.9 836 81.7
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1343.6 836 82.4
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1343.2 870 79.4
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1343.2 864 80.3
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1342.0 813 83.0
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1341.6 792 85.2
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1339.3 824 82.4
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1339.3 836 81.9
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1338.2 839 81.6
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1333.9 858 80.0
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1333.2 822 81.9
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1331.2 836 80.9
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1331.2 836 81.3
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1328.5 836 80.9
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1326.6 839 80.3
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1326.6 842 81.4
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1324.3 911 76.2
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1323.9 839 80.8
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1323.1 824 82.3
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1322.4 808 82.8
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1318.5 864 79.1
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1318.1 866 78.3
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1317.0 826 80.9
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1317.0 836 81.1
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 839 80.2
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1314.7 838 80.0
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1312.4 858 79.3
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1311.6 840 79.9
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1311.2 779 83.4
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1308.5 844 80.1
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1308.1 818 80.9
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1306.6 860 79.7
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1304.7 864 78.5
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1300.8 839 80.2
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1300.4 815 80.6
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1298.1 863 77.2
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1298.1 815 80.6
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1297.7 836 79.4
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1297.0 834 78.4
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1295.8 818 81.1
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1294.6 815 80.2
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1293.5 865 78.0
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1293.1 857 78.2
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1292.3 888 75.2
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1290.8 842 78.7
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1290.4 853 77.4
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1288.5 809 79.4
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1285.0 875 72.7
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1284.2 839 77.9
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1284.2 853 77.1
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1284.2 844 78.7
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 859 78.2
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1277.3 821 80.1
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1275.8 837 77.9
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 853 76.9
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 873 75.7
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1272.3 825 79.9
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1270.0 815 79.3
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1269.6 776 82.5
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1269.6 830 78.2
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1268.8 819 79.7
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1268.4 839 77.1
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1267.7 816 78.7
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1265.8 815 79.1
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1265.0 861 77.1
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1264.6 874 76.3
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1263.1 816 79.3
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1262.3 829 78.2
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1261.9 821 79.3
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1256.5 818 79.5
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1253.8 825 78.4
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1253.4 837 77.4
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1253.0 841 78.1
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1253.0 818 79.2
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1253.0 818 79.2
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1253.0 818 79.2
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1253.0 805 78.8
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1251.9 810 79.0
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1250.0 785 81.7
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1248.8 829 77.8
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1245.3 805 78.3
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1245.0 807 79.4
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1244.2 825 76.5
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1243.4 815 77.3
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1242.6 837 76.9
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1242.6 837 76.9
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1242.6 837 76.9
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1242.6 837 76.9
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1241.9 820 79.3
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1240.3 820 79.1
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1240.3 808 77.7
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1239.6 877 72.9
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1236.5 824 78.2
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1230.7 807 78.4
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1228.0 824 71.8
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1222.2 781 80.4
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1221.1 816 76.7
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1218.8 777 79.8
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1216.8 836 75.0
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1208.4 826 76.5
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1208.0 876 72.8
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1198.7 813 75.0
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1197.6 869 73.4
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1194.9 821 75.3
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1190.3 759 79.3
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1185.2 779 77.4
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1179.5 881 69.7
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1178.7 842 73.8
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1178.7 841 73.8
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1164.4 712 82.6
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1157.1 811 72.3
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1151.7 811 75.6
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1142.9 810 72.6
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1139.4 806 72.8
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1135.9 780 73.8
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1121.7 813 70.6
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1106.3 724 79.3
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 7.1e-308 1060.4 839 68.8
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 9.4e-284 980.3 577 82.3
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 4.1e-279 964.9 623 72.2
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.1e-263 913.7 822 63.3
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 7.2e-260 901.0 599 74.0
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 2.2e-256 889.4 513 83.4
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 1.2e-251 873.6 554 82.5
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 6.3e-187 658.7 709 54.6
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 2.4e-146 523.9 458 58.7
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 5.6e-143 512.7 330 76.1
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 6.6e-136 489.2 351 77.5
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 1.2e-110 405.2 312 73.1
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.0e-100 371.3 397 53.4
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 2.7e-97 360.9 259 69.9
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.1e-89 334.7 584 45.4
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 8.5e-59 233.0 156 75.6
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 2.3e-48 198.4 129 77.5
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 8.2e-46 189.9 163 59.5
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 3.1e-37 161.4 477 30.0
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.6e-33 149.1 464 29.1
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 5.2e-32 144.1 76 88.2
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.8e-30 138.3 458 27.5
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.3e-27 129.4 475 29.1
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 8.6e-27 126.7 68 88.2
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 2.5e-26 125.2 433 28.4
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 4.7e-25 120.9 96 66.7
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 8.9e-24 116.7 114 54.4
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-17 95.5 266 27.8
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 3.4e-15 88.2 220 31.4
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.7e-14 85.9 74 60.8
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 2.4e-13 82.0 83 50.6
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 3.9e-11 74.7 194 30.4
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 2.1e-09 68.9 138 34.1
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-08 64.7 70 45.7
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 9.8e-07 60.1 42 66.7


User provided reference genes

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