Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2669 Punica granatum HOM05D007830 ORTHO05D009947 2.8e-146 521.9 265 100.0
PGR031G1570 Punica granatum HOM05D007830 ORTHO05D009947 1.2e-104 383.6 264 75.8
TPR.G2587 Trifolium pratense HOM05D007830 ORTHO05D009947 2.7e-48 196.4 267 42.3
Medtr1g484840 Medicago truncatula HOM05D007830 ORTHO05D009947 2.3e-47 193.4 267 42.7
Hma1.2p1_0052F.1_g030410 Hydrangea macrophylla HOM05D007830 ORTHO05D009947 8.1e-45 184.9 266 40.6
Sabra05G0014700 Salix brachista HOM05D007830 ORTHO05D009947 2.8e-37 159.8 266 36.1
Sabra05G0000600 Salix brachista HOM05D007830 ORTHO05D009947 1.1e-36 157.9 266 36.5
TWI56G0273 Tripterygium wilfordii HOM05D007830 ORTHO05D009947 2.2e-34 150.2 266 33.5
Psat6g155440 Pisum sativum HOM05D007830 ORTHO05D009947 1.9e-33 147.1 266 35.0
Glyma.20G092100 Glycine max HOM05D007830 ORTHO05D009947 3.2e-33 146.4 265 32.8
Phvul.007G204600 Phaseolus vulgaris HOM05D007830 ORTHO05D009947 8.7e-31 138.3 265 32.8
Duzib128G1385 Durio zibethinus HOM05D007830 ORTHO05D009947 1.5e-30 137.5 266 31.2
Potri.005G003200 Populus trichocarpa HOM05D007830 ORTHO05D009947 3.7e-29 132.9 266 32.0
Nitab4.5_0005904g0050 Nicotiana tabacum HOM05D007830 ORTHO05D009947 6.2e-29 132.1 188 42.0
Ca_10196_v3 Cicer arietinum L. HOM05D007830 ORTHO05D009947 8.2e-29 131.7 266 32.0
Actinidia11685 Actinidia chinensis HOM05D007830 ORTHO05D009947 9.0e-28 128.3 264 33.3
Lj5g0007590 Lotus japonicus HOM05D007830 ORTHO05D009947 7.6e-27 125.2 266 33.1
CAN.G1248.21 Capsicum annuum HOM05D007830 ORTHO05D009947 6.1e-24 115.5 155 40.6
Potri.013G002800 Populus trichocarpa HOM05D007830 ORTHO05D009947 2.3e-23 113.6 266 30.5
Manes.09G180800 Manihot esculenta HOM05D007830 ORTHO05D009947 8.2e-21 105.1 266 27.8
Thecc.05G329100 Theobroma cacao HOM05D007830 ORTHO05D009947 3.4e-19 99.8 86 50.0
CiPaw.07G037200 Carya illinoinensis HOM05D007830 ORTHO05D009947 1.7e-18 97.4 85 49.4
Gorai.007G309100 Gossypium raimondii HOM05D007830 ORTHO05D009947 2.9e-18 96.7 262 27.5
VMungo0720G1493 Vigna mungo HOM05D007830 ORTHO05D009947 2.9e-18 96.7 265 27.9
arahy.Tifrunner.gnm1.ann1.B5RE77 Arachis hypogaea HOM05D007830 ORTHO05D009947 5.0e-18 95.9 96 47.9
COL.COLO4_05513 Corchorus olitorius HOM05D007830 ORTHO05D009947 5.0e-18 95.9 83 50.6
Lalb_Chr18g0046201 Lupinus albus HOM05D007830 ORTHO05D009947 1.1e-17 94.7 227 31.3
Gohir.D11G285900 Gossypium hirsutum HOM05D007830 ORTHO05D009947 1.9e-17 94.0 262 27.1
Cfa006760 Carpinus fangiana HOM05D007830 ORTHO05D009947 2.7e-16 90.1 72 51.4
AUR62000469 Chenopodium quinoa HOM05D007830 ORTHO05D009947 7.9e-16 88.6 263 28.9
QL03p010264 Quercus lobata HOM05D007830 ORTHO05D009947 3.0e-15 86.7 70 51.4
QL03p010498 Quercus lobata HOM05D007830 ORTHO05D009947 3.0e-15 86.7 70 51.4
MSTRG.16426 Avicennia marina HOM05D007830 ORTHO05D009947 6.7e-15 85.5 266 25.2
Peaxi162Scf00357g00014 Petunia axillaris HOM05D007830 ORTHO05D009947 1.5e-14 84.3 266 25.2
ClCG10G018110 Citrullus lanatus HOM05D007830 ORTHO05D009947 1.3e-13 81.3 266 24.1
Ciclev10011168m.g Citrus clementina HOM05D007830 ORTHO05D009947 1.7e-13 80.9 65 53.8
Haze_03995 Corylus avellana HOM05D007830 ORTHO05D009947 1.7e-13 80.9 65 52.3
CsaV3_3G038190 Cucumis sativus L. HOM05D007830 ORTHO05D009947 2.4e-12 77.0 83 41.0
Eucgr.H01319 Eucalyptus grandis HOM05D007830 ORTHO05D009947 5.3e-12 75.9 61 54.1
Nitab4.5_0002485g0040 Nicotiana tabacum HOM05D007830 ORTHO05D009947 5.3e-12 75.9 66 53.0
AUR62006810 Chenopodium quinoa HOM05D007830 ORTHO05D009947 9.1e-12 75.1 265 24.2
Migut.B00878 Erythranthe guttata HOM05D007830 ORTHO05D009947 1.2e-11 74.7 266 24.8
Cc02_g35800 Coffea canephora HOM05D007830 ORTHO05D009947 1.5e-11 74.3 84 47.6
DCAR_029288 Daucus carota HOM05D007830 ORTHO05D009947 2.0e-11 73.9 265 25.7
Dinv24509 Davidia involucrata HOM05D007830 ORTHO05D009947 1.0e-10 71.6 69 50.7
Solyc01g101150.3 Solanum lycopersicum HOM05D007830 ORTHO05D009947 1.0e-10 71.6 65 50.8
Sopen01g044630 Solanum pennellii HOM05D007830 ORTHO05D009947 1.0e-10 71.6 65 50.8
MD12G1200400 Malus domestica HOM05D007830 ORTHO05D009947 1.3e-10 71.2 64 43.8
PGSC0003DMG400018287 Solanum tuberosum HOM05D007830 ORTHO05D009947 1.7e-10 70.9 66 50.0
MELO3C009562.2 Cucumis melo HOM05D007830 ORTHO05D009947 6.5e-10 68.9 78 39.7
MD04G1187000 Malus domestica HOM05D007830 ORTHO05D009947 8.5e-10 68.6 60 43.3
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 3.2e-09 66.6 201 27.4
Prupe.6G305500 Prunus persica HOM05D007830 ORTHO05D009947 4.2e-09 66.2 50 54.0
Sed0014604 Sechium edule HOM05D007830 ORTHO05D009947 4.2e-09 66.2 265 22.6
Gohir.A11G275500 Gossypium hirsutum HOM05D007830 ORTHO05D009947 9.4e-09 65.1 50 52.0
FAN02G3946 Fragaria x ananassa HOM05D007830 ORTHO05D009947 2.7e-08 63.5 50 48.0
FAN05G5807 Fragaria x ananassa HOM05D007830 ORTHO05D009947 2.7e-08 63.5 50 48.0
FAN09G0226 Fragaria x ananassa HOM05D007830 ORTHO05D009947 2.7e-08 63.5 50 48.0
Rhsim11G0102200 Rhododendron simsii HOM05D007830 ORTHO05D009947 2.7e-08 63.5 69 40.6
MBI06_g27503_MAGBIO Magnolia biondii HOM05D007830 ORTHO05D009947 4.7e-08 62.8 75 41.3
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 4.7e-08 62.8 160 24.4
SGA_v2.0_scaffold117G32413 Striga asiatica HOM05D007830 ORTHO05D009947 1.4e-07 61.2 264 22.0
CANSAT54G0214 Cannabis sativa HOM05D007830 ORTHO05D009947 3.0e-07 60.1 50 52.0
RcHm_v2.0_Chr3g0458391 Rosa chinensis HOM05D007830 ORTHO05D009947 3.0e-07 60.1 50 48.0
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 3.9e-07 59.7 156 24.4
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 6.7e-07 58.9 152 26.3
MD15G1385700 Malus domestica HOM05D006740 ORTHO05D008571 8.8e-07 58.5 156 29.5
Cc04_g09190 Coffea canephora HOM05D000001 ORTHO05D000003 1.1e-06 58.2 194 24.7
Phvul.002G036600 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 1.1e-06 58.2 117 30.8
Sed0019079 Sechium edule HOM05D006740 ORTHO05D008571 1.5e-06 57.8 156 26.9
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 1.5e-06 57.8 236 25.4
Oeu029182.1 Olea europaea HOM05D007830 ORTHO05D009947 2.6e-06 57.0 61 47.5
Sabra18G0036400 Salix brachista HOM05D000001 ORTHO05D010146 3.3e-06 56.6 116 25.9
Sed0004940 Sechium edule HOM05D006740 ORTHO05D008571 3.3e-06 56.6 146 28.8
SMO367G1176 Selaginella moellendorffii HOM05D009701 ORTHO05D000003 3.3e-06 56.6 127 29.9
ATR0048G002 Amborella trichopoda HOM05D006740 ORTHO05D008571 4.4e-06 56.2 145 28.3
BraA05t22010Z Brassica rapa HOM05D006707 ORTHO05D008243 4.4e-06 56.2 201 26.9
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 4.4e-06 56.2 271 19.9
Gohir.A05G068900 Gossypium hirsutum HOM05D000001 ORTHO05D000003 5.7e-06 55.8 117 29.9
Gorai.009G072800 Gossypium raimondii HOM05D000001 ORTHO05D000003 5.7e-06 55.8 117 29.9
Manes.14G156200 Manihot esculenta HOM05D000001 ORTHO05D010426 5.7e-06 55.8 102 31.4
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 5.7e-06 55.8 213 24.4
A08p34080 Brassica napus HOM05D002825 ORTHO05D003824 7.4e-06 55.5 150 23.3
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 7.4e-06 55.5 228 25.4
Thecc.05G207800 Theobroma cacao HOM05D007456 ORTHO05D009411 7.4e-06 55.5 109 34.9
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 9.7e-06 55.1 151 25.8
Thecc.09G231500 Theobroma cacao HOM05D000001 ORTHO05D000003 9.7e-06 55.1 117 30.8


User provided reference genes

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