Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 0.0e+00 1494.9 735 100.0
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 5.9e-287 990.7 738 65.3
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 2.9e-286 988.4 706 67.0
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 1.9e-285 985.7 709 67.3
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 7.2e-285 983.8 706 67.1
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 1.4e-283 979.5 730 65.3
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 1.2e-282 976.5 730 65.1
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 4.8e-281 971.1 696 66.2
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 2.0e-279 965.7 704 65.9
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 3.5e-279 964.9 699 65.5
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 8.6e-278 960.3 727 64.0
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 5.5e-277 957.6 700 65.6
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 1.6e-276 956.1 702 65.8
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 2.6e-274 948.7 701 64.5
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 5.7e-274 947.6 724 64.0
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 2.2e-273 945.7 742 62.5
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 3.7e-273 944.9 734 62.3
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 1.6e-271 939.5 701 65.9
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 2.7e-271 938.7 744 61.6
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 3.6e-268 928.3 702 64.1
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 5.7e-266 921.0 705 62.4
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 1.3e-265 919.8 761 58.7
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 2.2e-265 919.1 698 64.5
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 2.9e-265 918.7 690 65.7
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 3.2e-264 915.2 699 62.9
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 5.4e-264 914.4 736 61.7
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 1.6e-263 912.9 710 61.7
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 4.6e-263 911.4 703 62.2
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 4.6e-263 911.4 726 60.1
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 5.0e-262 907.9 700 63.4
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 4.7e-260 901.4 719 60.1
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 2.3e-259 899.0 725 60.1
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 6.8e-259 897.5 687 62.7
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 8.9e-259 897.1 722 60.8
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 7.0e-256 887.5 700 63.3
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 2.0e-255 885.9 697 61.4
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 1.3e-254 883.2 726 59.6
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 5.6e-253 877.9 744 58.9
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 3.6e-252 875.2 748 57.8
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 3.6e-252 875.2 706 59.5
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 8.1e-252 874.0 701 59.2
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 2.3e-251 872.5 701 59.5
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 4.0e-251 871.7 730 58.9
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 1.5e-250 869.8 738 58.3
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 4.4e-250 868.2 708 59.2
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 4.9e-249 864.8 727 59.3
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 1.9e-248 862.8 705 60.4
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 5.4e-248 861.3 727 57.8
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 5.4e-248 861.3 726 59.0
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 1.6e-247 859.8 734 57.8
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 3.0e-246 855.5 737 58.9
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 8.6e-246 854.0 736 56.8
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.6e-244 849.7 729 59.0
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 2.8e-244 849.0 714 58.3
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 2.8e-244 849.0 726 59.0
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 3.6e-244 848.6 734 57.8
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 1.4e-243 846.7 614 66.1
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 3.1e-243 845.5 702 59.5
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 5.2e-243 844.7 737 57.9
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 2.0e-242 842.8 736 58.2
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 2.6e-242 842.4 716 58.5
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 4.4e-242 841.6 734 57.9
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 3.8e-241 838.6 731 56.6
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 3.2e-240 835.5 727 57.6
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 9.2e-240 833.9 709 58.5
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 2.1e-239 832.8 735 57.0
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 6.0e-239 831.2 733 57.6
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 1.1e-235 820.5 619 63.0
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 9.0e-235 817.4 704 57.4
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 4.4e-234 815.1 746 56.3
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 7.1e-232 807.7 701 57.8
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 9.3e-232 807.4 701 56.6
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 6.6e-230 801.2 700 58.4
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 3.6e-228 795.4 712 57.3
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 2.6e-226 789.3 699 56.4
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 4.5e-226 788.5 743 54.5
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 7.4e-221 771.2 733 53.3
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 1.6e-220 770.0 750 52.5
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 3.4e-218 762.3 651 57.3
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 5.8e-218 761.5 733 52.0
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 2.9e-217 759.2 678 56.3
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 4.9e-217 758.4 647 59.5
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 4.9e-217 758.4 714 52.7
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 1.8e-214 750.0 548 64.6
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 1.9e-213 746.5 733 52.3
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 7.4e-213 744.6 663 57.8
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 9.6e-213 744.2 708 54.9
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 6.2e-212 741.5 699 53.9
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 1.2e-207 727.2 695 54.5
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 1.6e-204 716.8 634 55.8
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 2.2e-204 716.5 693 52.7
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 2.7e-199 699.5 717 52.2
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 9.4e-192 674.5 739 47.2
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 3.4e-186 656.0 738 45.8
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 8.2e-180 634.8 576 55.2
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 3.3e-173 612.8 648 51.7
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.7e-172 609.4 709 47.0
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.9e-168 597.0 472 61.0
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 3.7e-148 529.6 518 52.3
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 1.6e-143 514.2 359 66.3
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 1.8e-134 484.2 426 57.3
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 2.2e-132 477.2 745 37.2
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 1.9e-128 464.2 723 38.0
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 7.3e-128 462.2 774 38.4
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.4e-126 458.0 702 37.3
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 6.4e-124 449.1 712 37.5
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 3.9e-121 439.9 621 40.4
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 6.0e-114 416.0 780 35.3
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 5.1e-105 386.3 763 33.8
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 7.4e-104 382.5 366 53.0
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 4.8e-95 353.2 334 52.1
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 3.0e-89 334.0 334 53.9
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.9e-76 290.8 285 53.3
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 1.7e-71 275.0 565 32.4
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 2.6e-61 241.1 176 65.9
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 1.5e-59 235.3 147 77.6
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 7.2e-59 233.0 189 59.3
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.4e-57 228.8 326 39.3
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 7.7e-53 213.0 140 71.4
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 1.1e-51 209.1 167 59.3
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 2.8e-39 167.9 458 29.0
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.5e-35 155.6 161 46.0
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 1.6e-34 152.1 125 60.8
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 2.9e-23 114.8 103 50.5
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.1e-22 112.8 75 62.7
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 1.8e-17 95.5 429 24.0
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 9.2e-14 83.2 101 46.5
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 4.6e-13 80.9 101 45.5
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 1.3e-12 79.3 77 51.9
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 4.4e-08 64.3 104 37.5
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 4.4e-08 64.3 72 52.8
Atru.chr12.1658 Acer truncatum HOM05D005923 ORTHO05D007376 3.2e-06 58.2 35 74.3
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 3.2e-06 58.2 130 32.3


User provided reference genes

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