Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 2.5e-115 419.1 264 100.0
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 8.9e-60 234.6 246 57.3
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 1.4e-57 227.3 256 64.1
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 1.7e-55 220.3 259 64.1
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 2.3e-55 219.9 259 64.1
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 2.5e-54 216.5 251 59.8
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 1.2e-53 214.2 250 66.4
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 4.7e-53 212.2 268 65.3
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 1.1e-52 211.1 263 66.2
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 1.8e-52 210.3 261 64.4
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 1.5e-51 207.2 232 67.2
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 7.6e-51 204.9 268 61.2
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 9.9e-51 204.5 260 59.6
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 4.9e-50 202.2 246 64.2
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 4.9e-50 202.2 246 64.2
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 4.9e-50 202.2 246 64.2
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 4.9e-50 202.2 272 60.3
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 4.9e-50 202.2 255 60.0
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 4.9e-50 202.2 265 52.1
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 8.4e-50 201.4 246 63.4
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 8.4e-50 201.4 220 67.7
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 1.1e-49 201.1 255 60.4
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 1.4e-49 200.7 248 63.3
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 1.4e-49 200.7 246 63.8
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 1.4e-49 200.7 265 49.8
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 1.9e-49 200.3 200 60.0
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 1.9e-49 200.3 260 60.8
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 1.9e-49 200.3 257 65.0
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 2.4e-49 199.9 255 60.4
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 4.1e-49 199.1 246 52.0
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 9.2e-49 198.0 221 52.0
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 1.2e-48 197.6 249 53.4
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 1.6e-48 197.2 257 60.3
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 2.7e-48 196.4 250 54.4
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 3.5e-48 196.1 255 52.5
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 3.5e-48 196.1 252 63.1
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 3.5e-48 196.1 256 64.8
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 6.0e-48 195.3 262 61.1
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 7.8e-48 194.9 261 51.0
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 2.3e-47 193.4 215 62.8
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 2.3e-47 193.4 266 58.3
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 3.0e-47 193.0 266 57.9
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 3.9e-47 192.6 256 60.5
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 3.9e-47 192.6 256 60.5
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 3.9e-47 192.6 266 57.9
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 5.1e-47 192.2 236 64.0
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 8.6e-47 191.4 224 67.4
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 8.6e-47 191.4 246 62.2
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.5e-46 190.7 266 62.4
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 1.9e-46 190.3 222 65.8
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 1.9e-46 190.3 226 52.7
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.9e-46 190.3 260 61.5
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 3.3e-46 189.5 264 47.3
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 4.3e-46 189.1 236 61.4
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 5.6e-46 188.7 233 60.9
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 5.6e-46 188.7 260 58.8
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 7.3e-46 188.3 238 50.8
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 9.6e-46 188.0 241 49.0
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.6e-45 187.2 267 50.6
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 2.1e-45 186.8 246 49.6
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 2.8e-45 186.4 268 62.7
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 2.8e-45 186.4 255 54.9
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 3.6e-45 186.0 260 58.1
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 6.2e-45 185.3 266 53.4
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 6.2e-45 185.3 230 51.7
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 8.1e-45 184.9 253 47.8
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 8.1e-45 184.9 233 58.4
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 1.1e-44 184.5 263 58.2
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 4.0e-44 182.6 213 53.1
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 4.0e-44 182.6 226 50.0
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 5.2e-44 182.2 263 55.1
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 6.8e-44 181.8 230 66.1
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 2.0e-43 180.3 275 44.4
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 2.6e-43 179.9 225 63.6
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 5.8e-43 178.7 261 49.0
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 9.9e-43 177.9 244 62.3
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.7e-42 177.2 221 48.9
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 6.4e-42 175.3 234 49.6
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 1.1e-41 174.5 264 59.1
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 1.1e-41 174.5 257 44.0
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 1.9e-41 173.7 265 45.7
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 1.9e-41 173.7 215 49.8
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 2.4e-41 173.3 264 56.8
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 2.4e-41 173.3 230 59.6
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 5.4e-41 172.2 264 59.1
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 2.1e-40 170.2 220 50.9
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 2.7e-40 169.9 257 51.8
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 6.0e-40 168.7 231 54.1
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 6.0e-40 168.7 247 55.5
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 1.3e-39 167.5 223 62.8
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 5.1e-39 165.6 260 60.0
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 1.5e-38 164.1 217 59.4
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 3.3e-38 162.9 234 47.4
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 3.3e-38 162.9 235 60.4
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 7.3e-38 161.8 260 58.8
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 3.6e-37 159.5 263 57.8
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 3.6e-37 159.5 225 53.3
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 6.2e-37 158.7 230 60.4
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 3.1e-36 156.4 222 53.6
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 4.0e-36 156.0 192 66.1
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 4.0e-36 156.0 260 56.2
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 5.3e-36 155.6 222 47.3
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 4.5e-35 152.5 248 52.8
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 5.8e-35 152.1 225 50.7
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 9.9e-35 151.4 256 44.1
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 1.3e-34 151.0 256 44.1
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 3.8e-34 149.4 263 55.1
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 4.6e-32 142.5 266 54.1
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 7.9e-32 141.7 137 60.6
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 1.7e-31 140.6 211 60.7
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 3.9e-31 139.4 159 52.8
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 6.6e-31 138.7 230 57.0
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.1e-30 137.9 128 62.5
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 3.3e-30 136.3 145 60.0
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 8.1e-29 131.7 135 56.3
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 3.4e-27 126.3 202 58.9
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 2.2e-26 123.6 187 56.1
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 3.8e-26 122.9 188 44.1
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 4.9e-26 122.5 149 52.3
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 4.3e-22 109.4 148 45.9
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 1.6e-16 90.9 242 30.2
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 1.0e-15 88.2 215 29.3
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 5.1e-15 85.9 229 28.8
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 7.4e-14 82.0 82 59.8
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 9.6e-14 81.6 93 51.6
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 6.3e-13 79.0 219 29.7
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 8.2e-13 78.6 216 27.3
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 2.4e-12 77.0 229 26.6
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 1.7e-10 70.9 77 51.9
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 3.8e-10 69.7 76 55.3
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 6.5e-10 68.9 52 67.3
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 2.7e-08 63.5 78 48.7
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 4.6e-08 62.8 224 25.9
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.8e-07 60.8 241 26.1
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 1.8e-07 60.8 88 47.7
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 6.7e-07 58.9 60 55.0
Pp3c23_6870 Physcomitrium patens HOM05D005866 ORTHO05D007078 9.7e-06 55.1 233 25.8


User provided reference genes

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