Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 6.1e-225 783.9 412 100.0
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 4.4e-191 671.4 415 84.6
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 7.8e-188 660.6 412 83.5
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.0e-187 660.2 412 83.0
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.3e-187 659.1 412 83.0
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 6.6e-187 657.5 411 83.0
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 8.7e-187 657.1 413 82.1
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 8.7e-187 657.1 412 82.0
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.1e-186 656.8 412 82.8
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 4.3e-186 654.8 412 81.8
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 7.3e-186 654.1 412 82.0
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 7.3e-186 654.1 413 83.5
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 9.6e-186 653.7 412 81.6
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 1.4e-184 649.8 412 80.8
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 1.8e-184 649.4 416 81.0
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 9.0e-184 647.1 412 80.8
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 9.0e-184 647.1 414 80.9
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 1.5e-183 646.4 412 80.8
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 2.6e-183 645.6 413 81.1
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 3.4e-183 645.2 415 81.7
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 5.8e-183 644.4 411 80.3
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.3e-182 643.3 420 79.5
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 2.2e-182 642.5 413 81.8
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 3.8e-182 641.7 410 82.2
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 4.9e-182 641.3 412 80.6
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 1.4e-181 639.8 410 80.7
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 2.4e-181 639.0 415 81.4
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 2.4e-181 639.0 412 80.6
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 2.1e-180 636.0 416 80.5
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 2.7e-180 635.6 412 80.6
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 7.9e-180 634.0 413 79.4
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 1.8e-179 632.9 410 81.0
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 3.0e-179 632.1 417 79.1
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 8.7e-179 630.6 425 77.6
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 1.5e-178 629.8 413 79.7
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 1.9e-178 629.4 415 79.5
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 3.3e-178 628.6 432 77.8
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 5.6e-178 627.9 416 79.6
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 9.6e-178 627.1 413 78.2
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 1.3e-177 626.7 410 80.0
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 1.6e-177 626.3 415 80.0
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 8.1e-177 624.0 418 78.9
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 1.1e-176 623.6 424 77.6
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.0e-176 621.7 412 79.1
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 6.9e-176 620.9 414 78.0
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 9.0e-176 620.5 413 77.2
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 2.0e-175 619.4 413 78.0
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 2.0e-175 619.4 449 74.6
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 4.5e-175 618.2 410 80.0
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 5.8e-175 617.8 413 76.3
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.3e-174 616.7 430 76.0
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 3.8e-174 615.1 414 79.2
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 6.5e-174 614.4 413 78.5
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 1.1e-173 613.6 412 77.9
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 2.5e-173 612.5 407 78.4
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 3.2e-173 612.1 423 76.4
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 4.2e-173 611.7 412 76.9
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 5.5e-173 611.3 413 78.0
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 2.1e-172 609.4 416 76.7
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 2.1e-172 609.4 412 78.2
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.7e-172 609.0 412 77.2
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 4.6e-172 608.2 412 75.5
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 6.0e-172 607.8 423 75.9
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 7.9e-172 607.4 415 76.6
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.0e-171 607.1 412 75.2
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 1.3e-171 606.7 416 75.7
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 1.3e-171 606.7 420 77.6
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 2.3e-171 605.9 417 76.5
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 2.3e-171 605.9 414 77.1
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 3.0e-171 605.5 413 77.5
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 3.0e-171 605.5 414 76.8
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 8.7e-171 604.0 417 76.3
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.5e-170 603.2 412 74.8
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.9e-170 602.8 409 77.3
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 3.3e-170 602.1 443 72.9
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 3.3e-170 602.1 414 76.8
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 7.4e-170 600.9 413 75.3
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 7.4e-170 600.9 412 75.0
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 2.8e-169 599.0 416 76.9
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.8e-169 599.0 443 72.5
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 2.8e-169 599.0 414 75.8
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 3.7e-169 598.6 416 76.9
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 6.2e-169 597.8 420 76.2
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.4e-168 596.7 412 76.7
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 3.1e-168 595.5 415 76.1
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.5e-167 593.2 424 72.9
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 2.6e-167 592.4 422 76.1
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 5.5e-165 584.7 417 74.8
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 9.3e-165 583.9 409 74.6
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 9.3e-165 583.9 413 73.1
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 1.2e-164 583.6 416 75.0
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.2e-164 583.6 412 74.8
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.7e-164 582.4 409 74.6
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 1.8e-163 579.7 414 74.4
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 8.7e-163 577.4 356 83.7
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 1.5e-162 576.6 392 77.0
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 1.8e-160 569.7 343 85.1
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 5.3e-160 568.2 419 72.8
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 5.0e-158 561.6 418 71.5
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.4e-157 560.1 356 81.2
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.4e-157 560.1 356 81.2
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 9.7e-154 547.4 415 69.4
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 5.3e-152 541.6 350 77.7
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 3.4e-151 538.9 413 71.7
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.0e-150 537.3 479 63.9
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.0e-150 537.3 479 63.9
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 5.7e-146 521.5 316 84.2
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 2.9e-142 509.2 421 67.7
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 3.2e-141 505.8 417 64.0
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 5.5e-141 505.0 364 73.4
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.2e-140 503.8 412 65.5
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 4.0e-139 498.8 357 73.1
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 2.6e-130 469.5 427 58.8
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 1.9e-125 453.4 428 61.2
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 4.0e-115 419.1 407 59.0
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 8.9e-115 417.9 273 79.5
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 8.3e-113 411.4 350 60.3
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 3.5e-103 379.4 343 61.5
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 3.5e-103 379.4 324 65.4
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 4.9e-97 359.0 350 60.3
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 6.0e-87 325.5 317 54.9
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 5.8e-82 308.9 419 43.7
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 3.0e-78 296.6 261 62.1
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 3.3e-77 293.1 421 42.3
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 3.3e-69 266.5 471 36.7
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.8e-67 260.8 466 38.8
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 3.5e-63 246.5 326 45.1
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.5e-58 231.1 126 86.5
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.0e-58 230.7 316 44.6
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 1.9e-53 214.2 134 78.4
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 7.6e-50 202.2 334 38.0
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 3.6e-47 193.4 337 35.9
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.9e-45 187.6 104 85.6
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 5.7e-45 186.0 104 84.6
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 7.7e-42 175.6 131 68.7
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 5.5e-40 169.5 109 77.1
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 1.9e-32 144.4 98 73.5
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 3.2e-32 143.7 115 68.7
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 2.9e-25 120.6 129 52.7
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 1.6e-23 114.8 65 86.2
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.1e-23 114.4 99 57.6
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 1.4e-19 101.7 133 48.1
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 5.3e-19 99.8 71 73.2
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 6.5e-17 92.8 103 52.4
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 2.5e-16 90.9 97 54.6
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 9.4e-16 89.0 59 78.0
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 1.2e-15 88.6 65 69.2
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 2.8e-12 77.4 96 42.7
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 7.0e-11 72.8 43 76.7
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 2.0e-10 71.2 44 77.3
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 7.7e-10 69.3 50 66.0
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 2.9e-09 67.4 41 78.0
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 3.8e-09 67.0 41 80.5
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 1.9e-08 64.7 60 65.0
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 3.2e-08 63.9 36 80.6
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 3.2e-08 63.9 36 80.6
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 3.2e-08 63.9 36 80.6
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 4.2e-08 63.5 64 60.9
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 1.2e-07 62.0 62 58.1
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 8.0e-07 59.3 36 80.6
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 4.0e-06 57.0 43 65.1
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 5.2e-06 56.6 119 28.6
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 6.8e-06 56.2 119 28.6
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 6.8e-06 56.2 119 28.6
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 8.8e-06 55.8 119 28.6
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 8.8e-06 55.8 119 28.6
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 8.8e-06 55.8 119 28.6


User provided reference genes

Program Settings