Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2508 Punica granatum HOM05D005726 ORTHO05D001733 2.5e-64 248.8 142 100.0
Eucgr.F00586 Eucalyptus grandis HOM05D005726 ORTHO05D001733 2.2e-28 129.4 138 48.6
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 8.5e-25 117.5 132 44.7
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.1e-24 117.1 143 42.0
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 1.1e-24 117.1 132 40.9
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 4.2e-24 115.2 133 45.9
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 7.2e-24 114.4 141 40.4
Gohir.A06G004000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.2e-23 113.6 141 44.0
Gorai.010G004200 Gossypium raimondii HOM05D005726 ORTHO05D001733 1.6e-23 113.2 141 44.0
Gohir.D06G006900 Gossypium hirsutum HOM05D005726 ORTHO05D001733 3.6e-23 112.1 141 43.3
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 4.7e-23 111.7 132 43.9
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 1.0e-22 110.5 134 43.3
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 1.0e-22 110.5 132 42.4
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 1.4e-22 110.2 143 39.9
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 1.4e-22 110.2 134 44.0
CiPaw.05G077000 Carya illinoinensis HOM05D005726 ORTHO05D001733 3.0e-22 109.0 132 45.5
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 5.2e-22 108.2 132 42.4
Lalb_Chr11g0061921 Lupinus albus HOM05D005726 ORTHO05D001733 6.8e-22 107.8 135 41.5
Phvul.009G017000 Phaseolus vulgaris HOM05D005726 ORTHO05D001733 1.5e-21 106.7 135 40.7
VMungo1309G2498 Vigna mungo HOM05D005726 ORTHO05D001733 2.0e-21 106.3 135 42.2
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 5.7e-21 104.8 132 43.2
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 5.7e-21 104.8 134 42.5
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 7.5e-21 104.4 126 44.4
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 1.3e-20 103.6 132 41.7
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 2.2e-20 102.8 139 43.2
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 2.8e-20 102.4 137 39.4
Sed0021833 Sechium edule HOM05D005726 ORTHO05D001733 3.7e-20 102.1 134 35.8
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 4.8e-20 101.7 134 38.8
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 4.8e-20 101.7 141 39.0
CANSAT01G1229 Cannabis sativa HOM05D005726 ORTHO05D001733 6.3e-20 101.3 151 37.7
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 6.3e-20 101.3 145 43.4
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 1.8e-19 99.8 137 41.6
CsaV3_2G029540 Cucumis sativus L. HOM05D005726 ORTHO05D001733 2.4e-19 99.4 137 46.0
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 3.1e-19 99.0 132 38.6
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 4.1e-19 98.6 145 35.9
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 5.4e-19 98.2 133 39.1
CANSAT25G0582 Cannabis sativa HOM05D005726 ORTHO05D001733 1.6e-18 96.7 139 48.9
MBI05_g46327_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 1.6e-18 96.7 120 42.5
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 1.6e-18 96.7 132 39.4
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 2.7e-18 95.9 135 39.3
Atru.chr13.290 Acer truncatum HOM05D005726 ORTHO05D001733 3.5e-18 95.5 134 37.3
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 3.5e-18 95.5 134 40.3
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 3.5e-18 95.5 133 39.1
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 5.9e-18 94.7 132 39.4
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 7.7e-18 94.4 145 36.6
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 7.7e-18 94.4 133 38.3
Manes.04G078400 Manihot esculenta HOM05D005726 ORTHO05D001733 2.3e-17 92.8 135 49.6
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 5.0e-17 91.7 132 39.4
ClCG05G018250 Citrullus lanatus HOM05D005726 ORTHO05D001733 5.0e-17 91.7 134 39.6
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.1e-16 90.5 135 37.8
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 1.1e-16 90.5 140 36.4
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 1.1e-16 90.5 132 38.6
Prupe.1G365100 Prunus persica HOM05D005726 ORTHO05D001733 1.5e-16 90.1 140 50.7
Cpa.g.sc26.44 Carica papaya HOM05D005726 ORTHO05D001733 2.5e-16 89.4 121 38.8
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 2.5e-16 89.4 135 37.0
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 3.3e-16 89.0 132 37.9
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 3.3e-16 89.0 132 37.9
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 4.2e-16 88.6 127 39.4
CsaV3_3G045890 Cucumis sativus L. HOM05D005726 ORTHO05D001733 4.2e-16 88.6 134 38.1
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 4.2e-16 88.6 135 36.3
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 5.5e-16 88.2 137 38.7
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 7.2e-16 87.8 137 38.0
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 7.2e-16 87.8 137 38.0
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 9.5e-16 87.4 137 38.0
A09p10920 Brassica napus HOM05D005726 ORTHO05D001733 1.6e-15 86.7 137 38.0
BraA09t36732Z Brassica rapa HOM05D005726 ORTHO05D001733 1.6e-15 86.7 137 38.0
CARHR284740 Cardamine hirsuta HOM05D005726 ORTHO05D001733 1.6e-15 86.7 136 33.1
MELO3C003749.2 Cucumis melo HOM05D005726 ORTHO05D001733 2.8e-15 85.9 134 37.3
Sed0019554 Sechium edule HOM05D005726 ORTHO05D001733 2.8e-15 85.9 129 37.2
AT5G42146 Arabidopsis thaliana HOM05D005726 ORTHO05D001733 1.4e-14 83.6 136 33.8
AL8G19700 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 2.3e-14 82.8 138 34.1
MD08G1013100 Malus domestica HOM05D005726 ORTHO05D001733 2.3e-14 82.8 142 36.6
Sed0014046 Sechium edule HOM05D005726 ORTHO05D001733 2.3e-14 82.8 131 37.4
Carub.0008s0720 Capsella rubella HOM05D005726 ORTHO05D001733 3.0e-14 82.4 136 33.8
ClCG02G011420 Citrullus lanatus HOM05D005726 ORTHO05D001733 5.2e-14 81.6 129 39.5
Actinidia00594 Actinidia chinensis HOM05D005726 ORTHO05D001733 8.9e-14 80.9 121 38.8
AL8G19720 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 8.9e-14 80.9 138 33.3
MBI05_g46324_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 2.0e-13 79.7 132 35.6
Sed0014638 Sechium edule HOM05D005726 ORTHO05D001733 2.6e-13 79.3 129 38.0
Cc02_g16550 Coffea canephora HOM05D005726 ORTHO05D001733 5.7e-13 78.2 132 34.8
Oeu037538.1 Olea europaea HOM05D005726 ORTHO05D001733 1.7e-12 76.6 137 29.9
FAN04G1699 Fragaria x ananassa HOM05D005726 ORTHO05D001733 2.8e-12 75.9 117 34.2
RcHm_v2.0_Chr6g0302871 Rosa chinensis HOM05D005726 ORTHO05D001733 3.7e-12 75.5 128 35.2
Sopen04g035070 Solanum pennellii HOM05D005726 ORTHO05D001733 1.8e-11 73.2 133 31.6
PGSC0003DMG400009937 Solanum tuberosum HOM05D005726 ORTHO05D001733 3.1e-11 72.4 133 31.6
MBI05_g33720_MAGBIO Magnolia biondii HOM05D003064 ORTHO05D001733 7.0e-11 71.2 140 46.4
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 9.2e-11 70.9 112 33.0
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 9.2e-11 70.9 112 33.0
Oeu027542.1 Olea europaea HOM05D005726 ORTHO05D001733 1.2e-10 70.5 137 28.5
Nitab4.5_0002561g0020 Nicotiana tabacum HOM05D005726 ORTHO05D001733 2.0e-10 69.7 132 30.3
CsaV3_2G015680 Cucumis sativus L. HOM05D005726 ORTHO05D001733 4.5e-10 68.6 126 38.1
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 4.5e-10 68.6 115 31.3
Sabra09G0098800 Salix brachista HOM05D005726 ORTHO05D001733 4.5e-10 68.6 117 33.3
Thecc.09G214300 Theobroma cacao HOM05D003064 ORTHO05D001733 1.3e-09 67.0 121 33.1
Cpa.g.sc119.86 Carica papaya HOM05D003064 ORTHO05D001733 5.0e-09 65.1 86 40.7
Haze_22989 Corylus avellana HOM05D003064 ORTHO05D001733 6.6e-09 64.7 86 38.4
Lsat_1_v5_gn_2_9581 Lactuca sativa HOM05D005726 ORTHO05D001733 6.6e-09 64.7 132 28.8
Prupe.6G010700 Prunus persica HOM05D003064 ORTHO05D001733 6.6e-09 64.7 86 39.5
MELO3C020779.2 Cucumis melo HOM05D005726 ORTHO05D001733 8.6e-09 64.3 132 35.6
Eucgr.B03628 Eucalyptus grandis HOM05D003064 ORTHO05D001733 8.6e-09 64.3 86 39.5
Sc15g0004980 Simmondsia chinensis HOM05D003064 ORTHO05D001733 8.6e-09 64.3 82 40.2
Aa31LG1G14330 Aethionema arabicum HOM05D003064 ORTHO05D001733 1.1e-08 63.9 89 40.4
CiPaw.13G172000 Carya illinoinensis HOM05D003064 ORTHO05D001733 1.1e-08 63.9 87 35.6
Duzib150G0559 Durio zibethinus HOM05D003064 ORTHO05D001733 1.1e-08 63.9 113 31.9
THA.LOC104811059 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 1.1e-08 63.9 89 41.6
Thhalv10015257m.g Eutrema salsugineum HOM05D005726 ORTHO05D001733 1.5e-08 63.5 137 31.4
HanXRQChr02g0056621 Helianthus annuus HOM05D003064 ORTHO05D001733 1.9e-08 63.2 88 34.1
Lsat_1_v5_gn_6_50860 Lactuca sativa HOM05D003064 ORTHO05D001733 1.9e-08 63.2 86 36.0
Potri.003G216100 Populus trichocarpa HOM05D003064 ORTHO05D001733 1.9e-08 63.2 86 37.2
Glyma.02G258600 Glycine max HOM05D003064 ORTHO05D001733 3.3e-08 62.4 86 39.5
RcHm_v2.0_Chr5g0081431 Rosa chinensis HOM05D003064 ORTHO05D001733 3.3e-08 62.4 89 37.1
ATR0598G068 Amborella trichopoda HOM05D003064 ORTHO05D001733 4.3e-08 62.0 86 34.9
Cfa005180 Carpinus fangiana HOM05D005726 ORTHO05D001733 4.3e-08 62.0 80 46.2
FAN21G3633 Fragaria x ananassa HOM05D003064 ORTHO05D001733 4.3e-08 62.0 86 38.4
PGR042G3858 Punica granatum HOM05D005726 ORTHO05D001733 4.3e-08 62.0 143 31.5
VMungo0647G0318 Vigna mungo HOM05D003064 ORTHO05D001733 4.3e-08 62.0 86 39.5
Glyma.14G053000 Glycine max HOM05D003064 ORTHO05D001733 5.6e-08 61.6 86 39.5
LjContig00357g0022496 Lotus japonicus HOM05D003064 ORTHO05D001733 5.6e-08 61.6 86 34.9
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 5.6e-08 61.6 88 35.2
Duzib168G1332 Durio zibethinus HOM05D003064 ORTHO05D001733 7.3e-08 61.2 110 32.7
FAN16G3363 Fragaria x ananassa HOM05D003064 ORTHO05D001733 7.3e-08 61.2 86 38.4
MD11G1012600 Malus domestica HOM05D003064 ORTHO05D001733 7.3e-08 61.2 86 36.0
CSS0014301 Camellia sinensis var. sinensis HOM05D003064 ORTHO05D001733 9.5e-08 60.8 86 33.7
Carub.0006s1824 Capsella rubella HOM05D003064 ORTHO05D001733 9.5e-08 60.8 89 38.2
Gohir.A13G213900 Gossypium hirsutum HOM05D003064 ORTHO05D001733 9.5e-08 60.8 120 29.2
Gohir.D13G217700 Gossypium hirsutum HOM05D003064 ORTHO05D001733 9.5e-08 60.8 120 29.2
Gorai.013G248300 Gossypium raimondii HOM05D003064 ORTHO05D001733 9.5e-08 60.8 120 29.2
TPR.G32947 Trifolium pratense HOM05D003064 ORTHO05D001733 9.5e-08 60.8 86 34.9
TAR369G0713 Trochodendron aralioides HOM05D003064 ORTHO05D001733 9.5e-08 60.8 119 27.7
A03p09690 Brassica napus HOM05D003064 ORTHO05D001733 1.2e-07 60.5 89 36.0
Ah.11g039720 Amaranthus hybridus HOM05D005726 ORTHO05D001733 1.6e-07 60.1 122 30.3
BcaB01g04824 Brassica carinata HOM05D003064 ORTHO05D001733 1.6e-07 60.1 89 36.0
BolC3t13597H Brassica oleracea HOM05D003064 ORTHO05D001733 1.6e-07 60.1 89 36.0
BraA03t10285Z Brassica rapa HOM05D003064 ORTHO05D001733 1.6e-07 60.1 89 36.0
FvH4_3g44730 Fragaria vesca HOM05D003064 ORTHO05D001733 1.6e-07 60.1 86 37.2
MD03G1010800 Malus domestica HOM05D003064 ORTHO05D001733 1.6e-07 60.1 86 36.0
AL6G31410 Arabidopsis lyrata HOM05D003064 ORTHO05D001733 2.8e-07 59.3 89 37.1
Thhalv10015028m.g Eutrema salsugineum HOM05D003064 ORTHO05D001733 2.8e-07 59.3 89 36.0
FAN25G3035 Fragaria x ananassa HOM05D003064 ORTHO05D001733 2.8e-07 59.3 86 37.2
Atru.chr3.2230 Acer truncatum HOM05D003064 ORTHO05D001733 3.6e-07 58.9 86 37.2
BcaC03g15831 Brassica carinata HOM05D003064 ORTHO05D001733 3.6e-07 58.9 89 34.8
Medtr3g113930 Medicago truncatula HOM05D005726 ORTHO05D001733 3.6e-07 58.9 90 41.1
TPR.G34542 Trifolium pratense HOM05D005726 ORTHO05D001733 3.6e-07 58.9 120 33.3
BcaC04g19388 Brassica carinata HOM05D003064 ORTHO05D001733 4.7e-07 58.5 89 36.0
C02p35760 Brassica napus HOM05D003064 ORTHO05D001733 4.7e-07 58.5 89 36.0
C09p56240 Brassica napus HOM05D003064 ORTHO05D001733 4.7e-07 58.5 89 36.0
BolC9t58493H Brassica oleracea HOM05D003064 ORTHO05D001733 4.7e-07 58.5 89 36.0
Phvul.008G217700 Phaseolus vulgaris HOM05D003064 ORTHO05D001733 4.7e-07 58.5 86 37.2
EL10Ac1g02194 Beta vulgaris HOM05D005726 ORTHO05D001733 6.1e-07 58.2 128 28.9
ClCG02G023860 Citrullus lanatus HOM05D003064 ORTHO05D001733 6.1e-07 58.2 88 34.1
Medtr5g084250 Medicago truncatula HOM05D003064 ORTHO05D001733 6.1e-07 58.2 86 33.7
Sp6g24510 Schrenkiella parvula HOM05D003064 ORTHO05D001733 6.1e-07 58.2 89 37.1
AT5G19875 Arabidopsis thaliana HOM05D003064 ORTHO05D001733 8.0e-07 57.8 89 36.0
BcaB08g36562 Brassica carinata HOM05D003064 ORTHO05D001733 8.0e-07 57.8 89 36.0
A10p19870 Brassica napus HOM05D003064 ORTHO05D001733 8.0e-07 57.8 89 36.0
BraA10t44062Z Brassica rapa HOM05D003064 ORTHO05D001733 8.0e-07 57.8 89 36.0
Nn7g35954 Nelumbo nucifera HOM05D003064 ORTHO05D001733 8.0e-07 57.8 86 31.4
Sc09g0000290 Simmondsia chinensis HOM05D003064 ORTHO05D001733 8.0e-07 57.8 86 33.7
TPR.G16147 Trifolium pratense HOM05D003064 ORTHO05D001733 8.0e-07 57.8 85 32.9
TAR633G1282 Trochodendron aralioides HOM05D003064 ORTHO05D001733 8.0e-07 57.8 119 27.7
GSVIVG01001351001 Vitis vinifera HOM05D003064 ORTHO05D001733 8.0e-07 57.8 86 34.9
BcaB01g04845 Brassica carinata HOM05D003064 ORTHO05D001733 1.0e-06 57.4 89 34.8
BcaC04g19393 Brassica carinata HOM05D003064 ORTHO05D001733 1.0e-06 57.4 89 36.0
BolC9t58489H Brassica oleracea HOM05D003064 ORTHO05D001733 1.0e-06 57.4 89 36.0
PGR119G0056 Punica granatum HOM05D003064 ORTHO05D001733 1.0e-06 57.4 86 36.0
Lalb_Chr10g0105471 Lupinus albus HOM05D003064 ORTHO05D001733 1.4e-06 57.0 86 33.7
Nn2g15754 Nelumbo nucifera HOM05D003064 ORTHO05D001733 1.4e-06 57.0 86 31.4
Medtr5g084240 Medicago truncatula HOM05D003064 ORTHO05D001733 1.8e-06 56.6 89 32.6
QL01p010327 Quercus lobata HOM05D003064 ORTHO05D001733 1.8e-06 56.6 87 37.9
Cfa005181 Carpinus fangiana HOM05D005726 ORTHO05D001733 2.3e-06 56.2 76 44.7
MELO3C011013.2 Cucumis melo HOM05D005726 ORTHO05D001733 2.3e-06 56.2 29 69.0
Eucgr.J01788 Eucalyptus grandis HOM05D003064 ORTHO05D001733 2.3e-06 56.2 111 30.6
CARHR192990 Cardamine hirsuta HOM05D003064 ORTHO05D001733 3.0e-06 55.8 89 37.1
Lj1g0006182 Lotus japonicus HOM05D005726 ORTHO05D001733 3.0e-06 55.8 124 31.5
Manes.10G152800 Manihot esculenta HOM05D003064 ORTHO05D001733 4.0e-06 55.5 86 32.6
arahy.Tifrunner.gnm1.ann1.GF7MHW Arachis hypogaea HOM05D003064 ORTHO05D001733 6.8e-06 54.7 87 32.2
Oeu049545.1 Olea europaea HOM05D003064 ORTHO05D001733 6.8e-06 54.7 86 32.6
TWI38G0681 Tripterygium wilfordii HOM05D003064 ORTHO05D001733 6.8e-06 54.7 86 30.2
TAR623G1618 Trochodendron aralioides HOM05D003064 ORTHO05D001733 6.8e-06 54.7 112 29.5
Atru.chr11.2712 Acer truncatum HOM05D003064 ORTHO05D001733 8.9e-06 54.3 86 33.7
Lj3g0018900 Lotus japonicus HOM05D003064 ORTHO05D001733 8.9e-06 54.3 86 36.0
Potri.001G009200 Populus trichocarpa HOM05D003064 ORTHO05D001733 8.9e-06 54.3 81 38.3
Sed0002402 Sechium edule HOM05D003064 ORTHO05D001733 8.9e-06 54.3 86 31.4


User provided reference genes

Program Settings