Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 5.7e-217 757.3 382 100.0
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 1.2e-97 360.9 407 49.9
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 2.3e-85 320.1 410 47.3
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 6.8e-85 318.5 448 46.0
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 2.9e-83 313.2 420 45.7
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 1.1e-82 311.2 438 45.2
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.0e-81 307.0 435 45.3
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 1.0e-80 304.7 425 44.7
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.0e-80 304.7 439 44.4
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.3e-80 303.5 439 44.2
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 8.6e-80 301.6 438 44.1
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 1.1e-79 301.2 431 43.2
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 3.6e-78 296.2 440 43.4
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 4.7e-78 295.8 439 43.7
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 8.0e-78 295.0 445 44.3
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 1.0e-77 294.7 445 42.9
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 1.0e-77 294.7 445 43.8
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 1.4e-77 294.3 449 42.3
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 1.5e-76 290.8 443 42.9
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 3.4e-76 289.7 413 45.8
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 6.4e-75 285.4 401 43.1
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 1.9e-74 283.9 446 41.7
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 2.4e-74 283.5 414 42.5
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 5.4e-74 282.3 373 43.7
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 7.0e-74 282.0 443 42.2
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 2.0e-73 280.4 423 43.7
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 2.7e-73 280.0 415 43.4
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 2.7e-73 280.0 407 43.5
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 4.6e-73 279.3 425 44.0
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 1.7e-72 277.3 354 46.3
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 2.3e-72 276.9 407 42.8
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 5.0e-72 275.8 441 44.0
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 6.6e-72 275.4 423 44.2
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 1.1e-71 274.6 434 40.8
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 7.3e-71 271.9 420 42.1
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 1.6e-70 270.8 432 42.8
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 1.8e-69 267.3 465 40.2
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 2.3e-69 266.9 406 41.9
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 3.1e-69 266.5 416 42.3
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 4.0e-69 266.2 395 45.6
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 5.2e-69 265.8 428 43.5
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 8.9e-69 265.0 417 41.5
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 2.9e-67 260.0 439 44.0
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 1.4e-66 257.7 410 41.7
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 2.4e-66 256.9 455 39.1
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 2.7e-65 253.4 428 40.4
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 4.6e-65 252.7 398 38.9
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 6.0e-65 252.3 481 37.8
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 7.8e-65 251.9 381 45.1
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 1.0e-64 251.5 413 41.2
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 5.1e-64 249.2 412 41.0
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 3.3e-63 246.5 390 43.3
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 4.3e-63 246.1 335 44.5
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 2.8e-62 243.4 416 38.7
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 3.6e-62 243.0 402 42.8
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 6.8e-61 238.8 445 38.4
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 8.9e-61 238.4 433 36.3
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 4.4e-60 236.1 472 37.5
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 4.1e-58 229.6 345 42.3
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 2.1e-57 227.3 404 39.9
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 4.6e-57 226.1 463 39.3
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 6.0e-57 225.7 324 44.8
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 7.8e-57 225.3 426 37.3
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 1.0e-56 224.9 413 37.5
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 1.0e-56 224.9 465 37.2
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 3.9e-56 223.0 410 38.8
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 3.9e-56 223.0 458 36.7
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 3.3e-55 219.9 403 40.0
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 2.1e-54 217.2 403 39.0
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 1.4e-53 214.5 363 41.6
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 3.1e-53 213.4 415 37.6
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 3.1e-53 213.4 440 35.9
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 3.1e-53 213.4 341 40.5
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 2.0e-52 210.7 420 36.4
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 1.3e-48 198.0 435 37.9
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 1.1e-47 194.9 318 41.8
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 4.3e-47 193.0 407 39.1
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 1.6e-46 191.0 333 38.7
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 3.1e-45 186.8 403 37.5
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 6.9e-45 185.7 376 38.8
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 2.0e-44 184.1 376 39.6
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 7.6e-44 182.2 389 36.8
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 1.7e-43 181.0 274 40.9
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 1.7e-43 181.0 272 41.2
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 8.4e-43 178.7 349 38.7
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 1.4e-42 177.9 391 36.1
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 3.5e-41 173.3 255 40.0
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 1.3e-38 164.9 328 36.9
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 3.6e-38 163.3 335 37.6
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 5.3e-37 159.5 316 37.3
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 1.1e-34 151.8 348 34.5
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 1.1e-34 151.8 381 32.3
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 1.4e-34 151.4 369 34.7
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 1.4e-34 151.4 418 34.2
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 1.4e-34 151.4 363 32.5
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 5.5e-34 149.4 250 38.4
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 9.3e-34 148.7 278 36.7
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 6.0e-33 146.0 354 35.0
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 7.9e-33 145.6 307 36.5
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 3.0e-32 143.7 309 35.9
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 6.7e-32 142.5 330 36.4
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 8.7e-32 142.1 296 38.5
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 1.1e-31 141.7 397 33.5
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 1.5e-31 141.4 303 35.6
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 1.5e-31 141.4 288 37.8
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 1.9e-31 141.0 297 38.4
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 3.3e-31 140.2 297 37.4
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 3.3e-31 140.2 297 37.4
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 4.3e-31 139.8 309 36.6
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 5.6e-31 139.4 373 31.4
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 7.4e-31 139.0 302 35.1
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 2.1e-30 137.5 368 34.5
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 6.2e-30 136.0 333 33.3
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 5.3e-29 132.9 360 34.2
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 5.8e-28 129.4 149 45.6
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 5.8e-28 129.4 349 33.8
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 6.5e-27 125.9 170 45.3
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 4.2e-26 123.2 272 32.4
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 2.5e-23 114.0 295 35.6
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 2.0e-20 104.4 309 30.1
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 7.6e-20 102.4 113 53.1
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 9.3e-18 95.5 64 76.6
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 1.2e-17 95.1 319 29.2
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 4.6e-17 93.2 132 43.9
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 6.1e-17 92.8 109 49.5
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 1.1e-15 88.6 74 60.8
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 4.3e-15 86.7 68 64.7
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 9.7e-15 85.5 97 49.5
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 6.3e-14 82.8 140 38.6
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 1.2e-12 78.6 83 51.8
Cpa.g.sc91.24 Carica papaya HOM05D005141 ORTHO05D006250 1.5e-12 78.2 86 53.5
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 4.5e-12 76.6 101 44.6
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 1.4e-10 71.6 191 28.8
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 3.6e-09 67.0 142 32.4
PSO017G7279 Papaver somniferum HOM05D002346 ORTHO05D002452 3.7e-06 57.0 108 36.1
PSO478G3203 Papaver somniferum HOM05D002346 ORTHO05D002452 4.8e-06 56.6 108 36.1


User provided reference genes

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