Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 3.0e-156 555.1 269 100.0
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 3.8e-106 388.7 270 75.6
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.4e-105 386.7 269 73.6
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 4.6e-104 381.7 215 83.7
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 3.0e-103 379.0 271 74.2
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 1.9e-102 376.3 266 72.6
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 2.8e-101 372.5 213 82.6
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 3.6e-101 372.1 227 79.3
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 6.2e-101 371.3 237 76.8
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 1.1e-100 370.5 214 83.2
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 2.4e-100 369.4 267 71.9
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 3.1e-100 369.0 209 83.3
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 5.3e-100 368.2 247 74.5
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 6.9e-100 367.9 226 80.5
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 1.2e-99 367.1 212 81.6
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 2.0e-99 366.3 266 68.0
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 2.6e-99 365.9 213 82.6
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 7.6e-99 364.4 222 79.7
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 1.3e-98 363.6 266 69.2
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 6.4e-98 361.3 260 70.8
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 8.4e-98 360.9 211 79.1
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 1.1e-97 360.5 257 71.6
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 1.1e-97 360.5 216 79.2
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 1.4e-97 360.1 216 81.5
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 1.4e-97 360.1 212 79.7
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 2.4e-97 359.4 212 82.1
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 4.2e-97 358.6 265 69.8
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 4.2e-97 358.6 216 81.0
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 9.3e-97 357.5 260 71.9
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 9.3e-97 357.5 212 81.6
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 1.6e-96 356.7 218 79.4
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 2.1e-96 356.3 255 70.6
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 2.1e-96 356.3 261 70.1
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 3.5e-96 355.5 216 80.6
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 7.9e-96 354.4 298 64.1
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 1.3e-95 353.6 212 78.3
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 2.3e-95 352.8 273 68.1
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 6.7e-95 351.3 264 69.3
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 1.1e-94 350.5 215 77.2
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 1.9e-94 349.7 275 66.2
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 1.9e-94 349.7 217 75.1
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 2.5e-94 349.4 210 77.6
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 4.3e-94 348.6 242 72.3
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 1.6e-93 346.7 224 75.0
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 2.1e-93 346.3 215 76.7
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 3.6e-93 345.5 215 76.3
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 3.6e-93 345.5 210 80.0
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 4.8e-93 345.1 216 76.9
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 6.2e-93 344.7 215 75.3
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 8.1e-93 344.4 216 76.9
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 8.1e-93 344.4 202 78.7
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 1.1e-92 344.0 249 67.5
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 1.8e-92 343.2 251 67.3
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 1.8e-92 343.2 272 65.4
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 2.4e-92 342.8 216 75.9
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 3.1e-92 342.4 216 76.9
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 4.0e-92 342.0 213 77.0
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 4.0e-92 342.0 213 77.0
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 5.3e-92 341.7 220 74.5
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 1.2e-91 340.5 258 67.1
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 3.4e-91 339.0 211 76.3
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 4.5e-91 338.6 261 66.7
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 4.5e-91 338.6 222 73.0
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 7.6e-91 337.8 211 75.8
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 1.3e-90 337.0 229 72.9
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 1.3e-90 337.0 224 72.8
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 1.7e-90 336.7 219 73.1
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 2.2e-90 336.3 259 66.0
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 2.9e-90 335.9 245 66.9
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 3.8e-90 335.5 223 73.1
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 7.9e-88 327.8 210 76.2
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 3.0e-87 325.9 217 72.8
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 3.9e-87 325.5 210 76.7
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 5.1e-87 325.1 207 76.3
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 1.3e-85 320.5 219 71.2
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 1.4e-84 317.0 227 68.7
FAN14G4015 Fragaria x ananassa HOM05D006169 ORTHO05D007698 1.5e-83 313.5 187 79.1
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 3.4e-83 312.4 217 71.9
Prupe.6G318000 Prunus persica HOM05D006169 ORTHO05D007698 1.0e-82 310.8 209 72.7
ClCG02G015230 Citrullus lanatus HOM05D006169 ORTHO05D007698 6.5e-82 308.1 218 71.1
FAN09G1827 Fragaria x ananassa HOM05D006169 ORTHO05D007698 8.4e-82 307.8 264 63.3
CiPaw.08G158800 Carya illinoinensis HOM05D006169 ORTHO05D007698 2.5e-81 306.2 259 62.5
TPR.G17714 Trifolium pratense HOM05D006169 ORTHO05D007698 3.2e-81 305.8 176 80.1
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 1.6e-80 303.5 242 65.3
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 3.9e-79 298.9 235 64.7
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 1.1e-78 297.4 205 73.2
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 5.7e-78 295.0 230 67.8
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 1.6e-77 293.5 308 55.2
Nn3g21567 Nelumbo nucifera HOM05D006169 ORTHO05D007698 7.6e-75 284.6 251 60.6
AUR62005238 Chenopodium quinoa HOM05D006169 ORTHO05D007698 5.0e-74 282.0 166 76.5
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 5.0e-74 282.0 230 67.0
Oeu048884.1 Olea europaea HOM05D006169 ORTHO05D007698 1.2e-72 277.3 173 79.2
Dinv24403 Davidia involucrata HOM05D006169 ORTHO05D007698 2.3e-71 273.1 199 72.9
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 2.3e-71 273.1 195 68.2
ClCG00G004550 Citrullus lanatus HOM05D006169 ORTHO05D007698 3.0e-71 272.7 299 51.8
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 3.9e-71 272.3 179 72.1
Psat6g151520 Pisum sativum HOM05D006169 ORTHO05D007698 3.3e-70 269.2 144 86.1
arahy.Tifrunner.gnm1.ann1.X8FEVW Arachis hypogaea HOM05D006169 ORTHO05D007698 7.4e-70 268.1 157 82.8
CDE11G0042 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 7.4e-70 268.1 223 61.0
Actinidia19770 Actinidia chinensis HOM05D006169 ORTHO05D007698 2.0e-62 243.4 169 73.4
Mapoly0065s0090 Marchantia polymorpha HOM05D006169 ORTHO05D007698 1.3e-61 240.7 195 57.9
FAN05G4461 Fragaria x ananassa HOM05D006169 ORTHO05D007698 3.6e-56 222.6 175 68.0
CBR_g8203 Chara braunii HOM05D006169 ORTHO05D007698 5.2e-55 218.8 209 52.2
Cre12.g508350 Chlamydomonas reinhardtii HOM05D006169 ORTHO05D007698 5.2e-55 218.8 179 58.1
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 5.7e-54 215.3 237 54.4
Nitab4.5_0000005g0540 Nicotiana tabacum HOM05D006169 ORTHO05D007698 7.7e-51 204.9 141 70.9
AagrBONN_evm.TU.Sc2ySwM_344.2014 Anthoceros agrestis HOM05D006169 ORTHO05D007698 1.0e-50 204.5 152 63.8
SMO358G0244 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 3.2e-49 199.5 179 51.4
Glyma.20G237950 Glycine max HOM05D006169 ORTHO05D007698 4.4e-46 189.1 120 75.0
MCO01G635 Micromonas commoda HOM05D006169 ORTHO05D007698 5.5e-41 172.2 181 48.6
TAR365G0132 Trochodendron aralioides HOM05D002548 ORTHO05D003031 5.7e-38 162.2 213 44.6
arahy.Tifrunner.gnm1.ann1.91HID7 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.8e-36 157.1 81 87.7
arahy.Tifrunner.gnm1.ann1.Z5NCG3 Arachis hypogaea HOM05D006169 ORTHO05D007698 2.7e-35 153.3 81 86.4
arahy.Tifrunner.gnm1.ann1.W0CMT4 Arachis hypogaea HOM05D006169 ORTHO05D007698 9.5e-33 144.8 76 88.2
PGSC0003DMG400043741 Solanum tuberosum HOM05D006169 ORTHO05D007698 2.8e-29 133.3 118 56.8
RcHm_v2.0_Chr1g0332671 Rosa chinensis HOM05D006169 ORTHO05D007698 6.3e-29 132.1 69 88.4
Sabra13G0011100 Salix brachista HOM05D006169 ORTHO05D007698 1.7e-26 124.0 144 52.1
PRCOL_00000586 Prasinoderma coloniale HOM05D006169 ORTHO05D007698 6.6e-26 122.1 176 39.2
MSTRG.5122 Avicennia marina HOM05D006169 ORTHO05D007698 4.7e-24 115.9 79 70.9
SMO117G0309 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 1.5e-22 110.9 116 39.7
arahy.Tifrunner.gnm1.ann1.CWA5R2 Arachis hypogaea HOM05D006169 ORTHO05D007698 2.6e-22 110.2 58 86.2
CSS0014495 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 1.1e-20 104.8 119 54.6
CSS0040457 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 5.2e-15 85.9 51 76.5
arahy.Tifrunner.gnm1.ann1.C5NY6B Arachis hypogaea HOM05D006169 ORTHO05D007698 8.9e-15 85.1 64 64.1
arahy.Tifrunner.gnm1.ann1.4I5A07 Arachis hypogaea HOM05D000158 ORTHO05D003614 1.5e-14 84.3 45 82.2
Os01g0343500 Oryza sativa ssp. japonica HOM05D006169 ORTHO05D007698 3.4e-14 83.2 74 56.8
arahy.Tifrunner.gnm1.ann1.GNZ56J Arachis hypogaea HOM05D006169 ORTHO05D007698 1.9e-12 77.4 44 77.3


User provided reference genes

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