Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 1.3e-166 589.7 315 100.0
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 2.4e-43 180.3 258 46.9
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 5.3e-43 179.1 324 39.8
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 4.5e-42 176.0 317 39.7
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.0e-41 174.9 275 45.5
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 1.0e-41 174.9 320 40.6
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 2.2e-41 173.7 282 44.3
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 6.5e-41 172.2 284 44.7
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 8.5e-41 171.8 244 46.7
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 8.5e-41 171.8 244 46.7
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 1.1e-40 171.4 298 43.3
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 2.5e-40 170.2 276 44.6
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 3.2e-40 169.9 283 43.5
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 5.5e-40 169.1 313 39.6
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 1.6e-39 167.5 316 38.9
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 2.7e-39 166.8 285 44.2
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 4.6e-39 166.0 282 42.2
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 6.1e-39 165.6 300 39.3
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 7.9e-39 165.2 306 41.5
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 7.9e-39 165.2 272 45.2
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 7.9e-39 165.2 306 41.2
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.8e-38 164.1 316 38.6
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.3e-38 163.7 320 40.3
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.0e-38 163.3 318 38.1
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 3.9e-38 162.9 321 40.2
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 5.1e-38 162.5 318 38.4
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 5.1e-38 162.5 294 41.5
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 6.7e-38 162.2 320 40.3
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 5.7e-37 159.1 321 39.9
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 9.7e-37 158.3 283 43.5
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 3.7e-36 156.4 309 40.1
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 6.3e-36 155.6 308 40.3
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 6.3e-36 155.6 323 38.7
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 3.1e-35 153.3 275 41.8
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 9.1e-35 151.8 285 41.4
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 1.2e-34 151.4 257 44.7
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 2.0e-34 150.6 296 40.2
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 2.0e-34 150.6 296 39.9
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 2.6e-34 150.2 243 43.2
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 5.9e-34 149.1 277 39.0
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 7.7e-34 148.7 258 43.8
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 2.2e-33 147.1 255 45.1
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 2.9e-33 146.7 296 41.6
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 2.9e-33 146.7 306 37.6
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 2.9e-33 146.7 290 41.0
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 3.8e-33 146.4 255 40.8
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 3.8e-33 146.4 306 37.6
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 5.0e-33 146.0 323 36.2
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 6.5e-33 145.6 286 39.9
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 6.5e-33 145.6 328 37.5
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 4.2e-32 142.9 304 38.2
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 5.5e-32 142.5 282 39.4
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 5.5e-32 142.5 249 41.8
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 7.2e-32 142.1 259 39.0
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 7.2e-32 142.1 323 37.2
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 9.4e-32 141.7 284 38.0
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 2.1e-31 140.6 292 39.0
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 3.6e-31 139.8 295 36.9
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 1.0e-30 138.3 302 38.1
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 1.0e-30 138.3 289 38.4
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.4e-30 137.9 302 38.4
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 2.3e-30 137.1 251 41.4
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 3.0e-30 136.7 312 34.9
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.0e-30 136.7 275 40.4
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 3.0e-30 136.7 299 35.8
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 5.1e-30 136.0 275 40.0
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 5.1e-30 136.0 263 39.9
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 6.7e-30 135.6 275 39.6
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 1.1e-29 134.8 285 37.9
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 2.6e-29 133.7 293 39.9
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 5.7e-29 132.5 290 37.6
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.7e-28 131.0 244 40.2
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.2e-28 130.6 279 36.6
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 4.8e-28 129.4 244 41.0
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 4.8e-28 129.4 278 37.4
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 4.8e-28 129.4 252 39.7
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 8.2e-28 128.6 316 37.3
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 1.4e-27 127.9 295 39.0
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 2.4e-27 127.1 281 39.1
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 3.1e-27 126.7 281 38.4
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 4.1e-27 126.3 303 33.0
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 1.2e-26 124.8 318 34.9
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 1.5e-26 124.4 292 35.3
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 1.3e-25 121.3 292 36.3
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 5.0e-25 119.4 328 34.8
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 8.5e-25 118.6 261 35.6
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 2.5e-24 117.1 335 33.1
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 3.2e-24 116.7 288 36.1
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 4.2e-24 116.3 276 36.2
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 4.2e-24 116.3 277 34.7
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 7.2e-24 115.5 332 33.4
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 9.4e-24 115.2 275 34.2
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 1.6e-23 114.4 321 35.5
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 2.7e-23 113.6 144 47.9
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 3.6e-23 113.2 379 33.2
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 6.1e-23 112.5 327 33.0
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 1.8e-22 110.9 371 32.1
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 1.8e-22 110.9 371 32.1
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 1.8e-22 110.9 280 33.9
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 1.8e-22 110.9 308 36.0
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 1.8e-22 110.9 254 35.8
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 2.3e-22 110.5 257 35.4
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 2.3e-22 110.5 320 34.7
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 3.0e-22 110.2 381 32.8
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 3.0e-22 110.2 261 37.5
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 3.0e-22 110.2 276 36.6
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 3.9e-22 109.8 247 38.9
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 5.2e-22 109.4 252 36.1
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 5.2e-22 109.4 244 37.3
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 6.7e-22 109.0 259 34.4
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 8.8e-22 108.6 301 35.5
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 8.8e-22 108.6 273 33.7
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 1.1e-21 108.2 288 33.0
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 1.5e-21 107.8 272 35.3
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 1.5e-21 107.8 264 35.6
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.5e-21 107.8 292 36.0
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.5e-21 107.8 296 34.8
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 2.6e-21 107.1 256 34.8
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 3.3e-21 106.7 379 32.7
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 3.3e-21 106.7 379 32.7
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 5.7e-21 105.9 286 33.6
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 2.8e-20 103.6 292 34.2
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 3.7e-20 103.2 279 35.5
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 1.1e-19 101.7 283 34.6
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 1.4e-19 101.3 120 51.7
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 2.4e-19 100.5 232 36.2
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 4.1e-19 99.8 273 31.5
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 4.1e-19 99.8 310 33.9
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 2.0e-18 97.4 275 32.4
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.0e-18 97.4 243 32.9
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.0e-18 97.4 243 32.9
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 4.5e-18 96.3 295 32.9
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 2.9e-17 93.6 248 31.5
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 3.8e-17 93.2 212 39.6
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 8.5e-17 92.0 281 33.8
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 3.2e-16 90.1 168 39.9
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 4.2e-16 89.7 288 31.9
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 4.2e-16 89.7 240 32.5
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 7.2e-16 89.0 281 32.4
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 9.4e-16 88.6 285 34.4
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 3.6e-15 86.7 176 38.6
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 3.0e-14 83.6 263 30.4
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 1.2e-13 81.6 207 32.9
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.6e-13 80.5 288 30.9
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 1.3e-12 78.2 183 35.0
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 1.7e-12 77.8 265 30.2
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 1.7e-12 77.8 273 31.9
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 8.2e-12 75.5 303 32.7
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 7.0e-11 72.4 78 55.1
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 1.6e-07 61.2 131 38.9
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.6e-07 61.2 56 60.7
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 1.6e-07 61.2 306 30.1
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.8e-06 57.8 267 28.1
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 5.2e-06 56.2 61 59.0


User provided reference genes

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