Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 9.5e-62 240.0 118 100.0
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.1e-44 181.8 118 76.3
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 3.2e-41 171.8 117 71.8
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 9.2e-41 170.2 95 87.4
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 9.2e-41 170.2 119 72.3
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.2e-40 169.9 119 71.4
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 3.5e-40 168.3 118 70.3
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 3.5e-40 168.3 119 73.1
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 4.6e-40 167.9 118 72.0
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 4.6e-40 167.9 120 73.3
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 7.8e-40 167.2 119 71.4
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 7.8e-40 167.2 116 71.6
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 7.8e-40 167.2 118 72.9
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 7.8e-40 167.2 119 72.3
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 1.0e-39 166.8 118 72.0
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.3e-39 166.4 119 71.4
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.3e-39 166.4 118 70.3
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.7e-39 166.0 118 68.6
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 1.7e-39 166.0 118 71.2
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 2.3e-39 165.6 117 70.9
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 2.3e-39 165.6 119 73.1
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 2.3e-39 165.6 118 72.0
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 3.0e-39 165.2 119 72.3
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 3.9e-39 164.9 118 71.2
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 5.1e-39 164.5 119 71.4
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 8.6e-39 163.7 118 67.8
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 1.1e-38 163.3 118 71.2
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 1.1e-38 163.3 119 70.6
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 1.1e-38 163.3 118 67.8
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 1.1e-38 163.3 118 69.5
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 1.1e-38 163.3 118 68.6
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 1.1e-38 163.3 119 72.3
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 1.5e-38 162.9 118 67.8
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 1.5e-38 162.9 118 67.8
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 1.5e-38 162.9 117 70.1
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.9e-38 162.5 118 68.6
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 2.5e-38 162.2 119 69.7
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 3.3e-38 161.8 119 71.4
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 3.3e-38 161.8 120 69.2
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 4.3e-38 161.4 118 67.8
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 4.3e-38 161.4 118 67.8
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 4.3e-38 161.4 118 67.8
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 5.6e-38 161.0 118 66.9
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 5.6e-38 161.0 119 71.4
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 7.3e-38 160.6 120 70.0
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 9.5e-38 160.2 119 68.9
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 2.1e-37 159.1 118 67.8
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.1e-37 159.1 118 67.8
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 2.8e-37 158.7 118 68.6
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 4.7e-37 157.9 119 67.2
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 6.2e-37 157.5 118 66.1
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 8.1e-37 157.1 119 68.9
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 1.1e-36 156.8 116 69.0
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.1e-36 156.8 117 68.4
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 1.8e-36 156.0 88 83.0
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 1.8e-36 156.0 117 67.5
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.3e-36 155.6 119 70.6
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 3.1e-36 155.2 118 65.3
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.1e-36 155.2 118 66.9
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.1e-36 155.2 147 59.2
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 5.2e-36 154.5 88 80.7
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 6.8e-36 154.1 118 66.9
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 8.9e-36 153.7 119 66.4
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 8.9e-36 153.7 93 78.5
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 8.9e-36 153.7 98 76.5
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 8.9e-36 153.7 97 78.4
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 1.2e-35 153.3 86 84.9
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 1.2e-35 153.3 86 84.9
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.2e-35 153.3 88 79.5
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 1.5e-35 152.9 96 79.2
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 2.0e-35 152.5 119 65.5
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 2.0e-35 152.5 87 83.9
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 2.6e-35 152.1 152 55.9
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.6e-35 152.1 118 66.1
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 2.6e-35 152.1 121 66.9
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 2.6e-35 152.1 118 67.8
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 2.6e-35 152.1 85 83.5
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 3.4e-35 151.8 118 64.4
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 3.4e-35 151.8 115 67.8
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 7.6e-35 150.6 114 66.7
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.9e-35 150.2 118 65.3
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 9.9e-35 150.2 103 70.9
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.3e-34 149.8 118 64.4
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 1.7e-34 149.4 95 74.7
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 2.2e-34 149.1 120 68.3
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.2e-34 149.1 118 65.3
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 2.2e-34 149.1 118 64.4
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 3.8e-34 148.3 120 65.0
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 4.9e-34 147.9 88 80.7
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 6.4e-34 147.5 117 66.7
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.1e-33 146.7 119 65.5
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 1.4e-33 146.4 119 66.4
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.4e-33 145.6 89 79.8
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 2.4e-33 145.6 118 61.9
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 3.2e-33 145.2 160 53.8
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 4.1e-33 144.8 87 81.6
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 7.1e-33 144.1 118 61.0
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 9.2e-33 143.7 118 61.0
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 1.2e-32 143.3 116 65.5
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.2e-32 143.3 118 61.0
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.6e-32 142.9 118 64.4
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 2.1e-32 142.5 106 68.9
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 3.5e-32 141.7 88 73.9
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 6.0e-32 141.0 116 62.9
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 6.0e-32 141.0 117 64.1
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.0e-31 140.2 118 61.9
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.3e-31 139.8 116 64.7
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 2.3e-31 139.0 119 61.3
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 2.3e-31 139.0 163 49.1
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 3.0e-31 138.7 116 63.8
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 3.0e-31 138.7 87 78.2
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 8.6e-31 137.1 87 77.0
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 8.6e-31 137.1 88 78.4
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 1.9e-30 136.0 119 59.7
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 1.9e-30 136.0 88 78.4
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 5.6e-30 134.4 118 61.9
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.6e-29 132.9 117 61.5
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 4.7e-29 131.3 118 58.5
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 1.4e-28 129.8 123 57.7
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.4e-28 129.0 85 70.6
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 6.9e-28 127.5 78 78.2
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.2e-27 126.7 81 71.6
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.7e-26 122.9 85 68.2
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 1.9e-25 119.4 127 54.3
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 1.9e-25 119.4 122 55.7
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 7.1e-25 117.5 72 75.0
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 6.0e-24 114.4 78 67.9
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 6.0e-24 114.4 80 67.5
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 7.8e-24 114.0 92 63.0
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.7e-23 112.8 216 35.2
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 3.0e-23 112.1 79 65.8
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 6.6e-23 110.9 98 62.2
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.1e-22 110.2 97 62.9
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 9.6e-22 107.1 91 62.6
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.6e-22 107.1 116 53.4
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 2.1e-21 105.9 100 58.0
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 4.8e-21 104.8 93 62.4
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 6.2e-21 104.4 78 62.8
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 8.1e-21 104.0 93 62.4
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 5.3e-20 101.3 67 74.6
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 6.9e-20 100.9 82 62.2
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.0e-20 100.5 85 63.5
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 8.4e-18 94.0 97 48.5
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.2e-17 92.0 61 77.0
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 9.3e-17 90.5 74 63.5
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 1.6e-16 89.7 72 63.9
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 1.6e-16 89.7 72 63.9
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.0e-15 87.0 51 80.4
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 1.3e-15 86.7 71 54.9
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 1.9e-14 82.8 51 80.4
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 2.5e-14 82.4 68 52.9
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 7.4e-14 80.9 98 45.9
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 9.0e-12 73.9 63 57.1
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 1.5e-11 73.2 54 64.8
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 4.5e-11 71.6 90 44.4
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.8e-10 68.6 51 68.6
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 1.1e-09 67.0 62 59.7
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 1.9e-09 66.2 75 45.3
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.2e-08 63.5 50 70.0
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 7.9e-08 60.8 72 47.2
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 1.3e-07 60.1 65 44.6
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 1.3e-07 60.1 65 44.6


User provided reference genes

Program Settings