Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 0.0e+00 1314.7 668 100.0
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 2.4e-234 815.8 666 67.1
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 1.4e-231 806.6 661 63.8
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 4.6e-230 801.6 670 63.9
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 7.9e-230 800.8 671 63.6
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 1.3e-229 800.0 623 66.1
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 2.3e-229 799.3 614 68.7
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 6.7e-229 797.7 611 68.4
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 1.9e-228 796.2 678 63.0
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 7.4e-228 794.3 675 62.8
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 9.6e-228 793.9 677 62.2
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 1.4e-226 790.0 672 63.2
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 5.3e-226 788.1 611 67.3
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 3.4e-225 785.4 674 61.4
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 3.8e-224 781.9 621 65.7
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 3.8e-224 781.9 621 65.7
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 4.9e-224 781.6 681 61.2
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 6.5e-224 781.2 624 66.0
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 1.9e-223 779.6 679 60.4
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 1.2e-222 776.9 665 60.9
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 1.6e-222 776.5 654 62.8
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 4.6e-222 775.0 621 65.4
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 4.6e-222 775.0 668 62.6
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 1.0e-221 773.9 640 65.0
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 3.9e-221 771.9 674 61.7
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 6.7e-221 771.2 675 61.0
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 1.9e-220 769.6 732 58.2
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 2.5e-220 769.2 624 64.7
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 5.7e-220 768.1 621 63.9
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 7.4e-220 767.7 689 60.1
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 9.7e-220 767.3 661 61.6
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 9.7e-220 767.3 681 61.4
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.6e-219 766.5 663 62.6
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 8.2e-219 764.2 611 64.8
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 1.1e-218 763.8 620 64.7
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 1.4e-218 763.5 679 60.4
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 1.8e-218 763.1 677 60.9
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 4.1e-218 761.9 631 63.2
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 9.0e-218 760.8 618 64.6
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.2e-217 760.4 732 57.7
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 2.6e-217 759.2 533 71.1
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 7.7e-217 757.7 661 61.7
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 2.5e-215 752.7 671 61.5
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 7.2e-215 751.1 746 56.7
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 9.4e-215 750.7 611 65.0
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 6.1e-214 748.0 612 64.2
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 1.9e-212 743.0 609 63.5
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 5.7e-212 741.5 609 63.5
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.3e-211 740.3 609 63.7
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 1.7e-208 729.9 532 69.9
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 1.2e-206 723.8 678 58.7
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 1.0e-205 720.7 623 62.9
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 3.0e-205 719.2 611 61.4
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 2.0e-204 716.5 678 58.1
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 1.8e-202 709.9 611 60.6
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 3.1e-202 709.1 673 57.7
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 9.1e-202 707.6 684 57.7
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 4.2e-199 698.7 696 57.5
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 5.5e-199 698.4 596 61.2
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 9.4e-199 697.6 681 58.0
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 2.7e-198 696.0 639 58.7
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 1.0e-197 694.1 632 58.7
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 1.8e-197 693.3 620 59.7
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 3.9e-197 692.2 685 56.9
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 9.7e-196 687.6 679 56.7
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 1.7e-195 686.8 687 55.3
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 2.8e-195 686.0 630 59.8
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 1.1e-194 684.1 616 60.7
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 2.4e-194 682.9 604 59.4
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 7.0e-194 681.4 638 57.2
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 7.0e-194 681.4 668 57.6
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.3e-192 677.2 668 57.2
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 5.0e-192 675.2 668 57.5
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 6.5e-192 674.9 677 55.8
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 8.5e-192 674.5 663 56.6
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 4.2e-191 672.2 612 58.3
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 4.0e-189 665.6 685 56.5
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 4.4e-188 662.1 678 54.3
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 5.3e-186 655.2 539 62.0
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 3.5e-185 652.5 665 54.1
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 4.5e-185 652.1 678 53.8
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 2.9e-184 649.4 667 54.0
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 1.1e-183 647.5 543 61.7
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 2.5e-183 646.4 518 62.2
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.2e-182 644.0 635 54.2
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 4.7e-182 642.1 620 54.7
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 2.3e-181 639.8 549 60.3
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 7.5e-180 634.8 664 52.9
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 4.8e-179 632.1 637 53.7
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 1.8e-178 630.2 638 55.5
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 2.4e-178 629.8 526 61.2
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 3.1e-178 629.4 534 60.1
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 4.1e-178 629.0 650 54.6
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 1.2e-177 627.5 526 60.8
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 1.2e-177 627.5 492 65.0
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 2.7e-177 626.3 682 52.8
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 1.0e-176 624.4 683 52.9
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 1.0e-176 624.4 617 56.6
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 1.7e-176 623.6 676 52.7
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 3.8e-176 622.5 678 52.7
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 6.6e-176 621.7 676 52.5
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 8.6e-176 621.3 526 60.5
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 3.3e-175 619.4 694 50.9
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 3.4e-172 609.4 689 52.2
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 9.8e-172 607.8 720 50.7
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 2.8e-171 606.3 618 55.0
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 6.3e-171 605.1 698 49.4
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.1e-170 604.4 442 69.7
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 1.4e-170 604.0 642 52.8
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 5.0e-168 595.5 644 52.5
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 1.2e-166 590.9 631 50.6
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 3.6e-166 589.3 667 50.2
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 1.0e-165 587.8 564 57.3
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 6.8e-165 585.1 529 58.0
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 1.7e-152 543.9 712 46.1
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 8.9e-149 531.6 604 50.2
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 4.1e-146 522.7 611 49.3
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 7.1e-146 521.9 636 46.1
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 1.1e-141 508.1 643 47.3
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 1.1e-125 454.9 561 44.4
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 1.0e-120 438.3 661 39.8
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 5.8e-116 422.5 651 43.8
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 1.3e-99 368.2 257 68.5
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 2.5e-95 354.0 320 59.1
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 7.7e-92 342.4 668 34.7
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 1.3e-91 341.7 578 37.4
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 2.2e-91 340.9 559 36.9
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 8.5e-91 339.0 236 69.5
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 1.9e-90 337.8 564 36.2
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 1.3e-86 325.1 411 41.6
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 6.5e-83 312.8 217 69.6
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 3.7e-70 270.4 343 45.5
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 1.0e-51 209.1 141 70.9
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 6.6e-51 206.5 253 48.2
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 1.4e-08 65.9 303 27.1
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 2.0e-07 62.0 51 60.8
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 7.6e-07 60.1 63 47.6
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 4.9e-06 57.4 136 31.6


User provided reference genes

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