Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 1.1e-65 253.1 121 100.0
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 2.8e-16 89.0 95 50.5
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 3.1e-15 85.5 106 43.4
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 3.4e-14 82.0 96 46.9
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 9.8e-14 80.5 131 42.7
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.2e-13 79.3 108 43.5
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 2.9e-13 79.0 84 46.4
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 2.9e-13 79.0 113 41.6
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.9e-13 79.0 105 44.8
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.7e-13 78.6 79 51.9
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.7e-13 78.6 79 51.9
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 4.9e-13 78.2 75 49.3
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 4.9e-13 78.2 75 49.3
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 8.3e-13 77.4 118 38.1
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.4e-12 75.9 111 42.3
THA.LOC104814116 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 4.1e-12 75.1 140 41.4
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 5.4e-12 74.7 126 39.7
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 7.1e-12 74.3 83 51.8
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.6e-11 73.2 121 47.1
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 1.6e-11 73.2 117 40.2
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.5e-11 72.0 119 47.1
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.5e-11 72.0 124 42.7
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 3.5e-11 72.0 87 46.0
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 4.6e-11 71.6 113 43.4
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.6e-11 71.6 87 52.9
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 4.6e-11 71.6 96 42.7
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.0e-11 71.2 130 43.8
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 7.8e-11 70.9 126 41.3
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 7.8e-11 70.9 127 45.7
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 7.8e-11 70.9 80 55.0
ATR0629G091 Amborella trichopoda HOM05D003969 ORTHO05D003125 1.0e-10 70.5 96 43.8
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.0e-10 70.5 84 47.6
Eucgr.C01640 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.7e-10 69.7 74 56.8
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 3.0e-10 68.9 110 36.4
Peaxi162Scf00315g00011 Petunia axillaris HOM05D003969 ORTHO05D003125 3.0e-10 68.9 72 47.2
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 3.0e-10 68.9 98 37.8
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 3.9e-10 68.6 90 45.6
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 3.9e-10 68.6 97 44.3
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 3.9e-10 68.6 65 55.4
Eucgr.C01698 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.1e-10 68.2 74 55.4
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.1e-10 68.2 83 54.2
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 5.1e-10 68.2 95 43.2
Sabra06G0202600 Salix brachista HOM05D008824 ORTHO05D003125 5.1e-10 68.2 76 51.3
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 5.1e-10 68.2 123 38.2
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 6.6e-10 67.8 81 49.4
Eucgr.C01694 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.6e-10 67.8 117 45.3
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 6.6e-10 67.8 98 42.9
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 6.6e-10 67.8 116 38.8
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 6.6e-10 67.8 86 45.3
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 8.6e-10 67.4 76 48.7
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 8.6e-10 67.4 100 42.0
Oeu010893.1 Olea europaea HOM05D003969 ORTHO05D003125 1.1e-09 67.0 85 45.9
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 1.5e-09 66.6 101 42.6
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 1.9e-09 66.2 73 49.3
SGA_v2.0_scaffold64G21997 Striga asiatica HOM05D003969 ORTHO05D003125 3.3e-09 65.5 102 40.2
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 4.3e-09 65.1 79 39.2
MSTRG.26029 Avicennia marina HOM05D003969 ORTHO05D003125 5.6e-09 64.7 89 41.6
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 5.6e-09 64.7 114 43.0
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 5.6e-09 64.7 101 41.6
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 5.6e-09 64.7 79 39.2
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 7.3e-09 64.3 116 38.8
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 7.3e-09 64.3 119 40.3
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 7.3e-09 64.3 79 39.2
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 9.5e-09 63.9 123 39.8
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 9.5e-09 63.9 119 41.2
ATR0763G001 Amborella trichopoda HOM05D003969 ORTHO05D003125 1.2e-08 63.5 88 39.8
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 1.2e-08 63.5 86 39.5
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.2e-08 63.5 74 45.9
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 1.2e-08 63.5 75 50.7
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 1.2e-08 63.5 71 43.7
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 2.1e-08 62.8 80 47.5
Thhalv10016092m.g Eutrema salsugineum HOM05D008824 ORTHO05D003125 2.1e-08 62.8 134 40.3
CDE02G0310 Ceratophyllum demersum HOM05D003969 ORTHO05D003125 2.8e-08 62.4 76 43.4
Aa31LG3G16070 Aethionema arabicum HOM05D008824 ORTHO05D003125 3.6e-08 62.0 118 39.0
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 3.6e-08 62.0 80 40.0
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 3.6e-08 62.0 76 50.0
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 6.2e-08 61.2 118 37.3
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 6.2e-08 61.2 76 40.8
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 8.1e-08 60.8 80 42.5
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 8.1e-08 60.8 114 36.0
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 8.1e-08 60.8 104 34.6
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 8.1e-08 60.8 103 40.8
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 1.1e-07 60.5 91 39.6
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 1.1e-07 60.5 76 48.7
FAN20G0523 Fragaria x ananassa HOM05D019695 ORTHO05D022679 1.1e-07 60.5 91 37.4
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.1e-07 60.5 103 40.8
Sabra18G0025300 Salix brachista HOM05D008824 ORTHO05D003125 1.1e-07 60.5 75 48.0
AT5G11070 Arabidopsis thaliana HOM05D008824 ORTHO05D003125 1.4e-07 60.1 117 39.3
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 1.4e-07 60.1 77 42.9
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 1.4e-07 60.1 71 45.1
BraA10t44721Z Brassica rapa HOM05D008824 ORTHO05D003125 1.8e-07 59.7 142 35.2
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.8e-07 59.7 112 37.5
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.8e-07 59.7 76 42.1
Nitab4.5_0017863g0010 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.8e-07 59.7 112 36.6
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 1.8e-07 59.7 67 44.8
BcaC04g19263 Brassica carinata HOM05D008824 ORTHO05D003125 2.3e-07 59.3 143 35.7
A10p26630 Brassica napus HOM05D008824 ORTHO05D003125 2.3e-07 59.3 143 35.0
C09p65790 Brassica napus HOM05D008824 ORTHO05D003125 2.3e-07 59.3 143 35.0
BolC9t59401H Brassica oleracea HOM05D008824 ORTHO05D003125 2.3e-07 59.3 143 35.7
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 3.1e-07 58.9 137 37.2
ClCG08G013530 Citrullus lanatus HOM05D008824 ORTHO05D003125 3.1e-07 58.9 116 37.1
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.1e-07 58.9 102 40.2
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 3.1e-07 58.9 89 38.2
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 3.1e-07 58.9 89 38.2
AL6G21690 Arabidopsis lyrata HOM05D008824 ORTHO05D003125 4.0e-07 58.5 118 39.0
Carub.0006s0958 Capsella rubella HOM05D008824 ORTHO05D003125 4.0e-07 58.5 122 35.2
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 4.0e-07 58.5 107 41.1
Eucgr.C00437 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.0e-07 58.5 79 40.5
BcaNung01909 Brassica carinata HOM05D008824 ORTHO05D003125 5.2e-07 58.2 129 40.3
BcaNung01911 Brassica carinata HOM05D008824 ORTHO05D003125 5.2e-07 58.2 129 40.3
FvH4_2g28320 Fragaria vesca HOM05D019695 ORTHO05D022679 5.2e-07 58.2 86 37.2
FAN24G2106 Fragaria x ananassa HOM05D019695 ORTHO05D022679 5.2e-07 58.2 86 37.2
FAN27G0582 Fragaria x ananassa HOM05D019695 ORTHO05D022679 5.2e-07 58.2 80 38.8
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 5.2e-07 58.2 75 45.3
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 5.2e-07 58.2 76 39.5
BcaNung07098 Brassica carinata HOM05D008824 ORTHO05D003125 6.8e-07 57.8 142 38.0
Potri.003G070750 Populus trichocarpa HOM05D008824 ORTHO05D003125 6.8e-07 57.8 85 47.1
SGA_v2.0_scaffold500G52494 Striga asiatica HOM05D003969 ORTHO05D003125 6.8e-07 57.8 118 36.4
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 8.9e-07 57.4 96 39.6
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 8.9e-07 57.4 96 39.6
AUR62012444 Chenopodium quinoa HOM05D003969 ORTHO05D003125 8.9e-07 57.4 82 40.2
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 8.9e-07 57.4 73 41.1
Sc23g0006550 Simmondsia chinensis HOM05D003969 ORTHO05D003125 8.9e-07 57.4 128 39.8
BcaC03g13348 Brassica carinata HOM05D008824 ORTHO05D003125 1.2e-06 57.0 108 41.7
C02p04840 Brassica napus HOM05D008824 ORTHO05D003125 1.2e-06 57.0 108 41.7
FAN15G0756 Fragaria x ananassa HOM05D019695 ORTHO05D022679 1.2e-06 57.0 80 38.8
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 1.2e-06 57.0 70 51.4
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.2e-06 57.0 112 38.4
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.2e-06 57.0 67 43.3
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.2e-06 57.0 69 43.5
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.2e-06 57.0 76 39.5
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.5e-06 56.6 72 44.4
Gohir.D05G059000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.5e-06 56.6 73 39.7
Gorai.009G060100 Gossypium raimondii HOM05D003969 ORTHO05D003125 1.5e-06 56.6 74 41.9
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 1.5e-06 56.6 68 45.6
vmacro12402 Vaccinium macrocarpon HOM05D006851 ORTHO05D008844 1.5e-06 56.6 93 39.8
BolC2t06442H Brassica oleracea HOM05D008824 ORTHO05D003125 2.0e-06 56.2 107 40.2
BraA02t05065Z Brassica rapa HOM05D008824 ORTHO05D003125 2.0e-06 56.2 127 40.2
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 2.0e-06 56.2 99 35.4
CAN.G551.21 Capsicum annuum HOM05D003969 ORTHO05D003125 2.6e-06 55.8 82 37.8
Cpa.g.sc187.25 Carica papaya HOM05D008824 ORTHO05D003125 2.6e-06 55.8 83 42.2
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 2.6e-06 55.8 75 45.3
MSTRG.10639 Avicennia marina HOM05D003969 ORTHO05D003125 3.4e-06 55.5 115 33.9
CANSAT01G2013 Cannabis sativa HOM05D008824 ORTHO05D003125 3.4e-06 55.5 76 43.4
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 3.4e-06 55.5 116 37.1
Lj5g0018030 Lotus japonicus HOM05D013068 ORTHO05D003125 3.4e-06 55.5 80 45.0
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 3.4e-06 55.5 82 40.2
HPP92_020075 Vanilla planifolia HOM05D003969 ORTHO05D003125 4.4e-06 55.1 97 44.3
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 4.4e-06 55.1 62 46.8
A03p04850 Brassica napus HOM05D008824 ORTHO05D003125 7.6e-06 54.3 127 37.0
BraA03t09824Z Brassica rapa HOM05D008824 ORTHO05D003125 7.6e-06 54.3 127 37.0
CARHR202220 Cardamine hirsuta HOM05D008824 ORTHO05D003125 7.6e-06 54.3 104 38.5
Gohir.A07G030200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 7.6e-06 54.3 65 49.2
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 7.6e-06 54.3 65 49.2
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 7.6e-06 54.3 65 49.2
MELO3C030306.2 Cucumis melo HOM05D008824 ORTHO05D003125 9.9e-06 53.9 87 39.1
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 9.9e-06 53.9 75 44.0
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 9.9e-06 53.9 77 40.3
Sp6g32430 Schrenkiella parvula HOM05D008824 ORTHO05D003125 9.9e-06 53.9 131 37.4
HPP92_020081 Vanilla planifolia HOM05D003969 ORTHO05D003125 9.9e-06 53.9 97 43.3


User provided reference genes

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