Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2162 Punica granatum HOM05D006714 ORTHO05D008103 0.0e+00 1364.4 684 100.0
Dinv28198 Davidia involucrata HOM05D006714 ORTHO05D008103 2.2e-126 457.2 649 43.9
Manes.02G077300 Manihot esculenta HOM05D006714 ORTHO05D008103 9.2e-125 451.8 398 58.8
TWI77G0889 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 1.6e-121 441.0 701 41.2
RcHm_v2.0_Chr2g0123431 Rosa chinensis HOM05D006714 ORTHO05D008103 2.8e-121 440.3 562 44.8
TAR629G3521 Trochodendron aralioides HOM05D006714 ORTHO05D008103 3.1e-120 436.8 654 44.8
Duzib211G0559 Durio zibethinus HOM05D006714 ORTHO05D008103 4.0e-120 436.4 604 44.7
Cfa007804 Carpinus fangiana HOM05D006714 ORTHO05D008103 6.8e-120 435.6 559 46.2
Ciclev10011142m.g Citrus clementina HOM05D006714 ORTHO05D008103 2.0e-119 434.1 711 41.5
CiPaw.03G072500 Carya illinoinensis HOM05D006714 ORTHO05D008103 2.9e-118 430.3 420 54.5
Potri.017G130400 Populus trichocarpa HOM05D006714 ORTHO05D008103 1.1e-117 428.3 397 55.2
Cc07_g13380 Coffea canephora HOM05D006714 ORTHO05D008103 1.9e-117 427.6 372 59.4
LjContig00141g0000721 Lotus japonicus HOM05D006714 ORTHO05D008103 7.1e-117 425.6 550 47.6
arahy.Tifrunner.gnm1.ann1.ZV72ZC Arachis hypogaea HOM05D006714 ORTHO05D008103 9.2e-117 425.2 653 41.8
Haze_14269 Corylus avellana HOM05D006714 ORTHO05D008103 1.2e-116 424.9 421 53.7
MD15G1138100 Malus domestica HOM05D006714 ORTHO05D008103 2.7e-116 423.7 417 53.2
GSVIVG01030704001 Vitis vinifera HOM05D006714 ORTHO05D008103 3.5e-116 423.3 582 45.4
FAN23G2031 Fragaria x ananassa HOM05D006714 ORTHO05D008103 4.6e-116 422.9 417 54.2
arahy.Tifrunner.gnm1.ann1.E1Z4YV Arachis hypogaea HOM05D006714 ORTHO05D008103 7.8e-116 422.2 672 40.9
Hma1.2p1_0158F.1_g070140 Hydrangea macrophylla HOM05D006714 ORTHO05D008103 1.0e-115 421.8 633 43.9
Sabra17G0108600 Salix brachista HOM05D006714 ORTHO05D008103 5.1e-115 419.5 401 54.6
Thecc.04G114100 Theobroma cacao HOM05D006714 ORTHO05D008103 8.6e-115 418.7 593 44.5
FvH4_1g25400 Fragaria vesca HOM05D006714 ORTHO05D008103 1.1e-114 418.3 399 55.6
CANSAT78G1609 Cannabis sativa HOM05D006714 ORTHO05D008103 1.9e-114 417.5 399 57.1
FAN26G1526 Fragaria x ananassa HOM05D006714 ORTHO05D008103 1.9e-114 417.5 417 53.7
CsaV3_5G024210 Cucumis sativus L. HOM05D006714 ORTHO05D008103 3.3e-114 416.8 573 45.7
Migut.K00904 Erythranthe guttata HOM05D006714 ORTHO05D008103 4.3e-114 416.4 373 59.2
Ca_05830_v3 Cicer arietinum L. HOM05D006714 ORTHO05D008103 1.2e-113 414.8 370 57.8
ECA247G1081 Erigeron canadensis HOM05D006714 ORTHO05D008103 2.1e-113 414.1 373 57.4
Gohir.D07G184700 Gossypium hirsutum HOM05D006714 ORTHO05D008103 3.6e-113 413.3 606 44.2
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.7e-113 412.9 382 57.1
QL02p058308 Quercus lobata HOM05D006714 ORTHO05D008103 6.2e-113 412.5 588 42.9
Gorai.001G205100 Gossypium raimondii HOM05D006714 ORTHO05D008103 8.1e-113 412.1 606 44.2
Gohir.A07G178400 Gossypium hirsutum HOM05D006714 ORTHO05D008103 1.8e-112 411.0 600 44.2
QL10p014398 Quercus lobata HOM05D006714 ORTHO05D008103 2.3e-112 410.6 530 45.3
Rhsim08G0018800 Rhododendron simsii HOM05D006714 ORTHO05D008103 3.1e-112 410.2 411 53.8
SalBow5G2523 Salvia bowleyana HOM05D006714 ORTHO05D008103 3.4e-111 406.8 593 44.0
HanXRQChr15g0483231 Helianthus annuus HOM05D006714 ORTHO05D008103 7.6e-111 405.6 407 53.6
VMungo0647G1195 Vigna mungo HOM05D006714 ORTHO05D008103 1.7e-110 404.4 380 56.8
ClCG01G008770 Citrullus lanatus HOM05D006714 ORTHO05D008103 2.9e-110 403.7 560 45.4
TWI74G0031 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 6.4e-110 402.5 446 50.9
EL10Ac2g03178 Beta vulgaris HOM05D006714 ORTHO05D008103 1.4e-109 401.4 381 54.6
Nn4g24295 Nelumbo nucifera HOM05D006714 ORTHO05D008103 2.4e-109 400.6 595 42.2
Medtr5g078170 Medicago truncatula HOM05D006714 ORTHO05D008103 3.2e-109 400.2 374 55.6
Sed0011157 Sechium edule HOM05D006714 ORTHO05D008103 2.7e-108 397.1 399 55.1
vmacro18531 Vaccinium macrocarpon HOM05D006714 ORTHO05D008103 1.1e-106 391.7 589 42.4
Nitab4.5_0000201g0160 Nicotiana tabacum HOM05D006714 ORTHO05D008103 5.6e-106 389.4 363 55.6
DCAR_014171 Daucus carota HOM05D006714 ORTHO05D008103 1.6e-105 387.9 326 62.3
SGA_v2.0_scaffold45G17176 Striga asiatica HOM05D006714 ORTHO05D008103 3.6e-105 386.7 388 54.6
Hund13103 Selenicereus undatus HOM05D006714 ORTHO05D008103 1.4e-104 384.8 422 50.0
AUR62018218 Chenopodium quinoa HOM05D006714 ORTHO05D008103 8.9e-104 382.1 445 49.4
Lalb_Chr04g0251401 Lupinus albus HOM05D006714 ORTHO05D008103 3.4e-103 380.2 533 45.0
Oeu032319.1 Olea europaea HOM05D006714 ORTHO05D008103 5.8e-103 379.4 280 65.7
AUR62037796 Chenopodium quinoa HOM05D006714 ORTHO05D008103 4.9e-102 376.3 285 63.5
Cpa.g.sc116.59 Carica papaya HOM05D006714 ORTHO05D008103 1.1e-101 375.2 279 65.6
Aqoxy1G00382 Aquilegia oxysepala HOM05D006714 ORTHO05D008103 1.9e-101 374.4 317 60.6
TPR.G8266 Trifolium pratense HOM05D006714 ORTHO05D008103 1.9e-101 374.4 564 41.1
AL6G27570 Arabidopsis lyrata HOM05D006714 ORTHO05D008103 2.4e-101 374.0 601 40.8
Carub.0006s1481 Capsella rubella HOM05D006714 ORTHO05D008103 2.7e-100 370.5 591 40.8
Thhalv10012945m.g Eutrema salsugineum HOM05D006714 ORTHO05D008103 3.9e-99 366.7 646 38.9
PSO017G5883 Papaver somniferum HOM05D006714 ORTHO05D008103 4.3e-98 363.2 335 56.4
AT5G16610 Arabidopsis thaliana HOM05D006714 ORTHO05D008103 5.6e-98 362.8 651 39.0
CAN.G222.36 Capsicum annuum HOM05D006714 ORTHO05D008103 7.3e-98 362.5 364 54.1
Solyc11g011060.3 Solanum lycopersicum HOM05D006714 ORTHO05D008103 6.2e-97 359.4 432 48.1
CARHR196610 Cardamine hirsuta HOM05D006714 ORTHO05D008103 8.1e-97 359.0 564 41.0
Sp6g27560 Schrenkiella parvula HOM05D006714 ORTHO05D008103 1.1e-96 358.6 588 41.0
Sopen11g005830 Solanum pennellii HOM05D006714 ORTHO05D008103 1.1e-96 358.6 432 47.9
Aa31LG11G13040 Aethionema arabicum HOM05D006714 ORTHO05D008103 1.5e-95 354.8 362 53.9
THA.LOC104820908 Tarenaya hassleriana HOM05D006714 ORTHO05D008103 8.4e-94 349.0 347 54.8
Nitab4.5_0006893g0050 Nicotiana tabacum HOM05D006714 ORTHO05D008103 2.7e-92 344.0 583 40.0
A10p22600 Brassica napus HOM05D006714 ORTHO05D008103 3.9e-91 340.1 267 64.0
Lsat_1_v5_gn_3_63641 Lactuca sativa HOM05D006714 ORTHO05D008103 8.7e-91 339.0 360 53.9
C09p60510 Brassica napus HOM05D006714 ORTHO05D008103 3.3e-90 337.0 267 63.3
BolC9t58884H Brassica oleracea HOM05D006714 ORTHO05D008103 3.3e-90 337.0 267 63.3
BraA10t44322Z Brassica rapa HOM05D006714 ORTHO05D008103 4.3e-90 336.7 619 38.6
HPP92_011112 Vanilla planifolia HOM05D006714 ORTHO05D008103 9.6e-90 335.5 373 50.7
Dinv19038 Davidia involucrata HOM05D006714 ORTHO05D008103 2.4e-88 330.9 510 43.1
ATR0171G009 Amborella trichopoda HOM05D006714 ORTHO05D008103 1.5e-87 328.2 415 45.8
HPP92_011097 Vanilla planifolia HOM05D006714 ORTHO05D008103 2.0e-87 327.8 373 49.9
BcaB08g36834 Brassica carinata HOM05D006714 ORTHO05D008103 1.1e-85 322.0 291 57.4
CDE07G1834 Ceratophyllum demersum HOM05D006714 ORTHO05D008103 4.3e-82 310.1 335 51.6
SalBow5G2948 Salvia bowleyana HOM05D006714 ORTHO05D008103 2.1e-81 307.8 588 38.8
Atru.chr1.1942 Acer truncatum HOM05D006714 ORTHO05D008103 2.4e-80 304.3 211 68.7
Prupe.4G281200 Prunus persica HOM05D006714 ORTHO05D008103 1.2e-79 302.0 328 53.0
Glyma.14G214400 Glycine max HOM05D006714 ORTHO05D008103 1.7e-78 298.1 305 54.1
Os03g0221300 Oryza sativa ssp. japonica HOM05D006714 ORTHO05D008103 6.5e-78 296.2 292 54.1
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 8.4e-78 295.8 399 43.4
unitig_748.g8636 Utricularia gibba HOM05D006714 ORTHO05D008103 9.3e-77 292.4 236 61.4
Peaxi162Scf00305g00412 Petunia axillaris HOM05D006714 ORTHO05D008103 1.2e-76 292.0 209 67.9
PSO063G0106 Papaver somniferum HOM05D006714 ORTHO05D008103 5.1e-75 286.6 237 61.2
Sc11g0004560 Simmondsia chinensis HOM05D006714 ORTHO05D008103 6.1e-68 263.1 329 47.4
Pp3c23_20330 Physcomitrium patens HOM05D006714 ORTHO05D008103 6.7e-67 259.6 277 49.8
PSO478G0421 Papaver somniferum HOM05D006714 ORTHO05D008103 9.7e-66 255.8 240 54.6
Pp3c24_16350 Physcomitrium patens HOM05D006714 ORTHO05D008103 2.9e-62 244.2 245 51.8
Actinidia35727 Actinidia chinensis HOM05D006714 ORTHO05D008103 3.3e-58 230.7 386 40.4
Actinidia28805 Actinidia chinensis HOM05D006714 ORTHO05D008103 4.4e-58 230.3 183 64.5
SEGI_28129 Sequoiadendron giganteum HOM05D006714 ORTHO05D008103 2.7e-52 211.1 255 48.2
CBR_g12792 Chara braunii HOM05D006714 ORTHO05D008103 1.8e-51 208.4 314 38.2
Psat2g047840 Pisum sativum HOM05D006714 ORTHO05D008103 3.9e-51 207.2 251 43.8
Phvul.008G236600 Phaseolus vulgaris HOM05D006714 ORTHO05D008103 9.7e-50 202.6 349 38.4
Eucgr.F02863 Eucalyptus grandis HOM05D006714 ORTHO05D008103 2.6e-47 194.5 120 76.7
MELO3C022869.2 Cucumis melo HOM05D006714 ORTHO05D008103 5.0e-46 190.3 560 32.0
SMO340G0205 Selaginella moellendorffii HOM05D006714 ORTHO05D008103 8.5e-46 189.5 183 50.8
QL93p0100_0731 Quercus lobata HOM05D006714 ORTHO05D008103 4.7e-44 183.7 116 72.4
CSS0036373 Camellia sinensis var. sinensis HOM05D006714 ORTHO05D008103 7.5e-34 149.8 281 38.1
CSS0024067 Camellia sinensis var. sinensis HOM05D006714 ORTHO05D008103 2.4e-32 144.8 281 37.4
QL93p0100_0723 Quercus lobata HOM05D006714 ORTHO05D008103 4.7e-28 130.6 292 34.2
Eucgr.F02862 Eucalyptus grandis HOM05D006714 ORTHO05D008103 3.8e-22 110.9 383 32.4
Peaxi162Scf00305g00413 Petunia axillaris HOM05D006714 ORTHO05D008103 3.0e-19 101.3 196 36.7


User provided reference genes

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