Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 2.1e-163 578.9 292 100.0
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 3.2e-135 485.3 293 81.9
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.8e-130 469.5 292 81.2
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.8e-130 469.5 292 81.2
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 6.9e-130 467.6 291 81.4
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 2.0e-129 466.1 293 80.5
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.6e-129 465.7 292 80.8
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 3.4e-129 465.3 292 80.1
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 6.5e-128 461.1 292 79.5
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 3.2e-127 458.8 293 78.5
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 4.2e-127 458.4 292 78.1
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.2e-126 456.8 295 77.3
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 1.6e-126 456.4 297 78.1
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 1.6e-126 456.4 292 78.8
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.7e-126 455.7 292 77.7
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 3.6e-126 455.3 296 76.4
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 3.6e-126 455.3 299 76.6
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 6.1e-126 454.5 292 78.1
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 1.0e-125 453.8 299 75.6
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.8e-125 453.0 292 77.7
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 8.7e-125 450.7 288 78.1
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 8.7e-125 450.7 293 78.5
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.5e-124 449.9 293 75.8
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 1.5e-124 449.9 292 77.7
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 5.7e-124 448.0 293 75.8
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 2.2e-123 446.0 292 78.1
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 3.7e-123 445.3 291 76.3
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 4.8e-123 444.9 292 77.4
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 4.8e-123 444.9 292 77.4
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 8.2e-123 444.1 292 77.4
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 8.2e-123 444.1 297 77.1
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 8.2e-123 444.1 293 77.1
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 1.4e-122 443.4 295 76.3
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.8e-122 443.0 290 77.9
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 1.8e-122 443.0 295 76.6
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 2.4e-122 442.6 292 77.1
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 3.1e-122 442.2 293 76.8
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 4.1e-122 441.8 294 76.5
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 9.0e-122 440.7 298 76.8
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 1.2e-121 440.3 298 76.8
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 1.5e-121 439.9 293 76.5
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 3.4e-121 438.7 290 76.9
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 3.4e-121 438.7 290 76.9
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 5.9e-121 438.0 290 76.9
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 5.9e-121 438.0 292 76.4
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 5.9e-121 438.0 292 76.4
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 5.9e-121 438.0 292 76.4
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 5.9e-121 438.0 297 75.4
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 1.0e-120 437.2 295 75.3
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 1.0e-120 437.2 293 75.4
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 1.3e-120 436.8 290 76.6
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.3e-120 436.8 293 75.1
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 1.7e-120 436.4 295 74.9
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 1.7e-120 436.4 295 74.9
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 1.7e-120 436.4 291 74.6
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 1.7e-120 436.4 291 74.6
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 5.0e-120 434.9 295 74.6
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 6.5e-120 434.5 295 74.9
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 8.5e-120 434.1 292 75.7
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 8.5e-120 434.1 293 75.1
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 1.1e-119 433.7 290 76.2
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 2.5e-119 432.6 293 73.4
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 2.5e-119 432.6 290 74.8
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 2.5e-119 432.6 290 74.8
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 4.2e-119 431.8 293 75.8
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 4.2e-119 431.8 292 74.7
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 5.5e-119 431.4 292 74.3
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 5.5e-119 431.4 292 74.7
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 7.2e-119 431.0 292 74.3
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 9.4e-119 430.6 291 73.5
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 1.2e-118 430.3 293 74.1
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 1.6e-118 429.9 292 74.0
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 2.1e-118 429.5 295 74.2
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 3.6e-118 428.7 290 74.5
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 6.1e-118 427.9 292 76.4
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 6.1e-118 427.9 293 74.4
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 7.9e-118 427.6 291 73.2
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.0e-117 427.2 292 74.0
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.4e-117 426.8 292 73.6
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 1.4e-117 426.8 291 73.9
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 1.8e-117 426.4 297 73.4
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 2.3e-117 426.0 281 76.9
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 3.9e-117 425.2 281 76.9
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 1.1e-116 423.7 281 76.9
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 1.1e-116 423.7 290 73.4
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 1.1e-116 423.7 290 74.5
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 3.3e-116 422.2 293 75.1
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 5.7e-116 421.4 293 75.4
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 5.7e-116 421.4 294 73.5
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 1.3e-115 420.2 296 71.6
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.3e-115 420.2 290 72.8
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 1.7e-115 419.9 294 74.1
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 2.2e-115 419.5 282 74.8
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 2.8e-115 419.1 296 72.3
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 3.7e-115 418.7 296 73.6
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 4.8e-115 418.3 292 75.0
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 4.8e-115 418.3 285 75.1
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 6.3e-115 417.9 293 72.7
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.1e-114 417.2 294 71.1
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.1e-114 417.2 290 72.4
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 6.9e-114 414.5 298 72.5
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 2.6e-113 412.5 286 74.1
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 3.4e-113 412.1 290 71.7
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 5.9e-113 411.4 293 72.7
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 5.9e-113 411.4 292 72.9
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 1.7e-112 409.8 297 70.7
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 1.7e-112 409.8 288 75.0
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 3.8e-112 408.7 297 70.7
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 8.5e-112 407.5 290 70.3
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 1.1e-111 407.1 295 72.2
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 1.9e-111 406.4 295 72.2
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 4.2e-111 405.2 293 72.4
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 4.2e-111 405.2 293 71.3
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 9.4e-111 404.1 297 70.4
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 9.4e-111 404.1 296 71.6
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 7.9e-110 401.0 292 70.9
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 1.4e-109 400.2 282 71.6
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 1.4e-109 400.2 294 71.4
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 6.7e-109 397.9 293 70.3
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 8.8e-109 397.5 296 68.6
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 9.7e-108 394.0 291 68.7
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 8.2e-107 391.0 296 66.9
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 9.1e-106 387.5 287 71.8
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 2.0e-105 386.3 295 65.8
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 4.5e-105 385.2 295 70.5
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 1.1e-103 380.6 273 71.4
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 1.5e-103 380.2 297 68.0
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 3.2e-103 379.0 290 67.2
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 5.2e-101 371.7 296 66.6
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 5.2e-101 371.7 296 67.9
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.6e-100 369.4 292 68.5
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.6e-100 369.4 293 67.2
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 4.4e-100 368.6 296 66.6
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 4.1e-98 362.1 296 65.5
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 5.3e-98 361.7 288 64.9
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 2.0e-97 359.8 305 63.3
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 4.2e-95 352.1 294 64.6
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 4.2e-95 352.1 261 68.2
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 5.5e-95 351.7 304 62.5
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 5.5e-95 351.7 293 64.5
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 9.4e-95 350.9 304 62.2
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 1.6e-94 350.1 306 60.1
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 3.7e-91 339.0 248 71.4
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 1.2e-84 317.4 292 58.9
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 1.1e-82 310.8 279 58.4
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.7e-80 303.5 215 74.0
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 2.8e-78 296.2 279 57.7
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 1.0e-77 294.3 280 56.4
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 3.1e-69 266.2 196 74.0
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 2.5e-63 246.5 275 52.7
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 2.3e-61 240.0 143 82.5
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 2.2e-59 233.4 279 50.5
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 1.1e-58 231.1 276 48.2
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 8.1e-54 214.9 167 69.5
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 2.7e-49 199.9 128 73.4
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 6.0e-49 198.7 145 71.7
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 9.6e-47 191.4 152 65.1
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 8.4e-35 151.8 104 71.2
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 1.6e-30 137.5 110 67.3
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 1.5e-28 131.0 110 65.5
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 1.8e-24 117.5 307 30.9
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 1.8e-24 117.5 100 66.0
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 6.7e-24 115.5 74 79.7
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 1.8e-16 90.9 73 60.3
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 5.7e-15 85.9 89 57.3
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 8.2e-14 82.0 73 61.6
CiPaw.06G069600 Carya illinoinensis HOM05D005748 ORTHO05D007123 7.4e-07 58.9 162 28.4
CDE02G4569 Ceratophyllum demersum HOM05D005748 ORTHO05D007123 7.4e-07 58.9 153 32.0
SHI26932 Sapria himalayana HOM05D009124 ORTHO05D012381 6.3e-06 55.8 68 44.1
TAR622G1138 Trochodendron aralioides HOM05D005748 ORTHO05D007123 6.3e-06 55.8 152 31.6


User provided reference genes

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