Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 2.2e-134 482.3 236 100.0
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 4.2e-85 318.5 222 71.2
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 7.4e-82 307.8 228 65.8
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 2.4e-80 302.8 228 64.5
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 5.0e-78 295.0 224 62.9
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 4.2e-77 292.0 230 62.2
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 1.6e-76 290.0 221 63.3
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 1.6e-76 290.0 230 61.7
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.7e-76 289.3 222 64.4
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 4.6e-76 288.5 237 58.6
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 1.0e-75 287.3 234 57.7
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 1.4e-75 287.0 238 61.3
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 3.9e-75 285.4 237 60.8
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.1e-74 283.9 211 63.5
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 1.5e-74 283.5 223 63.7
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 9.7e-74 280.8 229 59.4
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 1.7e-73 280.0 215 62.3
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 3.7e-73 278.9 209 63.6
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 6.3e-73 278.1 234 57.3
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 8.2e-73 277.7 230 57.4
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 1.1e-72 277.3 230 57.4
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 1.1e-72 277.3 204 63.7
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.4e-72 276.9 228 57.5
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.4e-72 276.2 224 58.5
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 4.1e-72 275.4 229 59.8
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 1.2e-71 273.9 201 63.7
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 1.0e-70 270.8 231 57.1
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 1.0e-70 270.8 238 55.9
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 1.3e-70 270.4 211 62.1
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 1.7e-70 270.0 213 61.0
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.1e-69 267.3 220 57.3
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 1.6e-68 263.5 239 56.1
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 1.6e-68 263.5 230 57.8
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 2.1e-68 263.1 194 67.0
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 2.7e-68 262.7 229 56.3
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 2.7e-68 262.7 213 60.1
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 1.8e-67 260.0 227 55.9
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 3.0e-67 259.2 209 60.8
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 5.1e-67 258.5 227 56.4
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 5.1e-67 258.5 212 59.4
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 5.1e-67 258.5 215 57.2
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 6.7e-67 258.1 232 55.2
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 1.1e-66 257.3 232 54.3
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 7.4e-66 254.6 206 59.2
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 1.3e-65 253.8 232 56.0
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 2.2e-65 253.1 213 59.2
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.8e-65 252.7 210 61.0
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 3.7e-65 252.3 207 60.4
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 3.7e-65 252.3 215 58.1
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 4.8e-65 251.9 232 53.9
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 8.2e-65 251.1 228 57.0
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 1.4e-64 250.4 227 54.6
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 1.4e-64 250.4 236 52.1
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 2.4e-64 249.6 208 57.7
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 2.4e-64 249.6 214 57.0
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 3.1e-64 249.2 211 60.2
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.1e-64 248.8 200 58.5
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.1e-64 248.8 200 58.5
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 7.0e-64 248.1 229 54.1
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 7.0e-64 248.1 209 58.4
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 9.1e-64 247.7 209 58.4
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 9.1e-64 247.7 225 54.7
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 1.2e-63 247.3 212 56.6
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 2.0e-63 246.5 201 61.2
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 2.6e-63 246.1 198 58.6
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 2.6e-63 246.1 197 59.9
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 2.6e-63 246.1 212 57.5
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 4.5e-63 245.4 227 54.2
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 4.5e-63 245.4 188 61.2
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 5.9e-63 245.0 212 56.1
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 7.7e-63 244.6 209 56.0
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 7.7e-63 244.6 218 56.9
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 7.7e-63 244.6 208 58.7
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 7.7e-63 244.6 225 53.3
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 7.7e-63 244.6 214 56.5
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 7.7e-63 244.6 191 60.2
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 7.7e-63 244.6 191 60.2
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 7.7e-63 244.6 198 58.1
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 1.0e-62 244.2 206 57.8
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 1.3e-62 243.8 214 57.0
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 1.3e-62 243.8 209 56.0
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 1.7e-62 243.4 187 60.4
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 2.2e-62 243.0 217 56.7
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 2.2e-62 243.0 211 56.4
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 2.2e-62 243.0 233 52.4
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 2.9e-62 242.7 225 53.8
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 2.9e-62 242.7 213 57.7
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 3.8e-62 242.3 209 55.5
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 3.8e-62 242.3 199 59.3
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 5.0e-62 241.9 199 59.3
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 5.0e-62 241.9 194 58.8
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 5.0e-62 241.9 204 55.9
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 6.5e-62 241.5 225 54.2
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 6.5e-62 241.5 225 52.9
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 1.1e-61 240.7 195 57.4
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 2.5e-61 239.6 185 61.6
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 3.2e-61 239.2 196 57.7
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.2e-61 239.2 204 56.4
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 4.2e-61 238.8 188 60.6
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 5.5e-61 238.4 212 53.8
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 1.6e-60 236.9 212 53.8
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 1.6e-60 236.9 213 51.2
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 3.6e-60 235.7 216 54.6
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 4.7e-60 235.3 212 54.2
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 6.1e-60 235.0 192 56.8
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 8.0e-60 234.6 218 52.3
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 1.4e-59 233.8 224 52.2
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 2.3e-59 233.0 211 55.0
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 3.0e-59 232.6 214 54.7
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 5.2e-59 231.9 216 52.8
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 6.7e-59 231.5 233 48.9
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 6.7e-59 231.5 213 53.1
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 7.5e-58 228.0 211 54.0
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 7.5e-58 228.0 211 54.0
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 9.7e-58 227.6 216 49.5
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 2.2e-57 226.5 255 48.6
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 4.8e-57 225.3 195 54.9
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 6.3e-57 224.9 223 52.5
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 8.2e-57 224.6 216 49.5
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 5.3e-56 221.9 222 51.8
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 1.2e-55 220.7 190 54.7
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 2.6e-55 219.5 229 50.2
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 4.5e-55 218.8 190 53.2
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 5.9e-55 218.4 193 53.4
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.0e-54 217.6 196 54.1
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.0e-54 217.6 187 58.8
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 1.7e-54 216.9 230 49.6
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 3.8e-54 215.7 230 49.6
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 8.5e-54 214.5 195 54.4
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 1.9e-53 213.4 201 51.7
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.7e-52 209.5 176 58.0
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 3.6e-52 209.1 192 50.5
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 2.3e-51 206.5 210 49.5
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.0e-51 206.1 188 51.6
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 8.8e-51 204.5 221 48.4
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.5e-50 203.8 226 47.3
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 5.7e-50 201.8 223 45.3
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.1e-48 197.6 226 46.0
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 7.2e-45 184.9 218 50.5
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 1.2e-44 184.1 127 67.7
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.8e-43 180.3 155 55.5
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 5.2e-43 178.7 188 47.9
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 1.5e-42 177.2 190 47.4
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 4.4e-42 175.6 226 45.1
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 1.7e-41 173.7 133 62.4
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.2e-39 167.5 144 54.9
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 5.6e-37 158.7 117 66.7
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 5.6e-37 158.7 177 52.0
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 1.2e-36 157.5 200 41.0
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.4e-35 154.1 187 45.5
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 4.4e-34 149.1 193 43.0
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 3.2e-32 142.9 142 50.7
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 1.6e-31 140.6 112 58.9
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 1.6e-31 140.6 218 38.1
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 3.5e-31 139.4 115 60.0
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.1e-28 130.2 121 56.2
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 1.4e-27 127.5 114 56.1
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 3.4e-26 122.9 117 51.3
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 4.4e-26 122.5 117 51.3
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 7.5e-26 121.7 108 59.3
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 3.7e-25 119.4 103 52.4
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 3.5e-23 112.8 159 43.4
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 6.0e-23 112.1 227 32.2
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 1.3e-22 110.9 108 50.9
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 6.6e-22 108.6 95 55.8
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 5.6e-21 105.5 132 42.4
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 2.1e-20 103.6 126 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 6.2e-20 102.1 171 33.9
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.1e-19 101.3 67 67.2
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 1.4e-19 100.9 87 48.3
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.8e-19 100.5 103 45.6
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 4.0e-19 99.4 84 52.4
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-18 97.8 92 50.0
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.1e-16 91.3 68 63.2
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 3.2e-16 89.7 79 59.5
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 5.4e-16 89.0 84 48.8
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 1.6e-12 77.4 61 57.4


User provided reference genes

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