Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 1.4e-111 406.4 211 100.0
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 3.5e-75 285.4 200 76.5
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 3.4e-70 268.9 205 69.8
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 2.2e-69 266.2 199 70.4
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 2.2e-69 266.2 204 68.6
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 2.2e-69 266.2 204 68.6
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 3.8e-69 265.4 200 71.5
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 3.8e-69 265.4 209 67.5
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 4.9e-69 265.0 205 69.3
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 4.9e-69 265.0 204 69.1
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.1e-68 263.8 204 68.1
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 1.4e-68 263.5 199 69.8
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 4.2e-68 261.9 200 69.5
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.6e-67 260.0 204 66.7
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 2.1e-67 259.6 204 67.6
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 2.7e-67 259.2 197 70.6
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 3.5e-67 258.8 208 67.3
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 4.6e-67 258.5 197 69.5
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 7.9e-67 257.7 201 68.2
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 1.0e-66 257.3 210 67.1
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 1.0e-66 257.3 199 67.3
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 2.3e-66 256.1 210 66.7
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 3.0e-66 255.8 204 68.1
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 3.9e-66 255.4 210 66.7
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 5.1e-66 255.0 198 68.2
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 8.7e-66 254.2 211 65.4
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.1e-65 253.8 210 65.7
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 1.1e-65 253.8 197 68.5
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 1.9e-65 253.1 213 65.3
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 1.9e-65 253.1 211 65.9
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 1.9e-65 253.1 211 65.9
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 2.5e-65 252.7 211 65.4
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 2.5e-65 252.7 208 65.9
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 3.3e-65 252.3 196 67.9
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 3.3e-65 252.3 196 66.3
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 3.3e-65 252.3 196 68.9
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 4.3e-65 251.9 202 67.8
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 4.3e-65 251.9 198 68.2
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 5.6e-65 251.5 210 65.7
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 1.3e-64 250.4 202 66.8
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 1.6e-64 250.0 198 67.2
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 1.6e-64 250.0 196 67.3
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 1.6e-64 250.0 196 67.3
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 2.8e-64 249.2 198 68.2
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 3.6e-64 248.8 197 69.0
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 6.2e-64 248.1 200 68.5
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 8.1e-64 247.7 215 63.7
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 1.1e-63 247.3 212 64.6
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 3.1e-63 245.7 200 64.5
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 3.1e-63 245.7 197 66.0
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 6.9e-63 244.6 211 64.5
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 2.0e-62 243.0 202 63.9
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 2.6e-62 242.7 208 63.9
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 5.8e-62 241.5 217 60.4
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 5.8e-62 241.5 217 60.8
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 7.6e-62 241.1 202 63.9
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 9.9e-62 240.7 237 59.5
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 1.7e-61 240.0 205 63.9
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 1.7e-61 240.0 201 65.7
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 2.2e-61 239.6 222 59.5
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 2.9e-61 239.2 212 63.2
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 2.9e-61 239.2 217 60.4
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 2.9e-61 239.2 197 63.5
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 4.9e-61 238.4 207 63.8
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 6.4e-61 238.0 207 61.8
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 1.1e-60 237.3 200 63.5
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 1.1e-60 237.3 208 61.5
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 3.2e-60 235.7 222 59.5
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 9.3e-60 234.2 209 56.9
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 9.3e-60 234.2 216 59.3
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 9.3e-60 234.2 189 65.6
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 9.3e-60 234.2 204 63.2
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 1.6e-59 233.4 205 61.0
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 2.1e-59 233.0 198 63.6
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.7e-59 232.6 206 61.2
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 4.6e-59 231.9 201 62.2
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 6.0e-59 231.5 217 62.2
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 6.0e-59 231.5 197 62.9
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 7.9e-59 231.1 202 63.4
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 1.0e-58 230.7 204 59.8
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 1.3e-58 230.3 206 62.6
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 2.3e-58 229.6 204 59.3
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 3.0e-58 229.2 205 60.0
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 1.1e-57 227.3 197 62.9
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 2.5e-57 226.1 207 59.4
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 3.3e-57 225.7 201 58.2
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 7.4e-57 224.6 199 61.8
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 1.3e-56 223.8 215 58.1
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 1.3e-56 223.8 218 61.9
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 2.1e-56 223.0 203 60.6
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 1.1e-55 220.7 209 59.3
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 1.4e-55 220.3 199 59.3
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 2.4e-55 219.5 202 60.9
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 1.2e-54 217.2 196 60.2
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.5e-54 216.9 166 66.9
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.5e-54 216.9 166 66.9
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 5.8e-54 214.9 169 65.7
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 1.0e-53 214.2 199 57.8
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.7e-53 213.4 215 58.6
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 2.7e-51 206.1 168 60.1
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 1.8e-50 203.4 197 57.4
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 6.7e-50 201.4 151 67.5
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 2.1e-48 196.4 179 58.1
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 2.6e-46 189.5 363 37.2
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 1.2e-43 180.6 157 58.6
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 2.3e-42 176.4 141 68.8
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 3.9e-42 175.6 157 61.1
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 1.8e-39 166.8 128 67.2
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 6.9e-39 164.9 128 67.2
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 6.5e-37 158.3 186 50.0
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 7.9e-35 151.4 138 60.9
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 2.3e-34 149.8 124 67.7
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 6.7e-34 148.3 182 46.7
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 2.8e-32 142.9 127 61.4
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 1.1e-31 141.0 117 66.7
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 1.4e-31 140.6 105 68.6
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 1.2e-30 137.5 177 42.4
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 2.0e-30 136.7 116 63.8
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 9.4e-28 127.9 203 41.9
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 1.7e-24 117.1 132 50.8
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 2.2e-24 116.7 182 37.9
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 1.2e-22 110.9 68 80.9
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 1.3e-21 107.5 129 49.6
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 4.2e-20 102.4 88 59.1
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 8.2e-16 88.2 74 66.2
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 3.1e-15 86.3 76 63.2
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 3.5e-14 82.8 73 61.6
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 3.8e-13 79.3 186 30.1
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 3.0e-10 69.7 60 56.7
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 5.2e-10 68.9 56 58.9
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 7.5e-09 65.1 48 66.7


User provided reference genes

Program Settings