Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 5.0e-105 384.4 190 100.0
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 1.1e-70 270.4 182 72.5
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 7.8e-66 254.2 183 71.0
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 7.3e-64 247.7 180 67.2
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 7.3e-64 247.7 184 66.3
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 1.2e-63 246.9 189 68.3
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 2.8e-63 245.7 165 70.3
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 8.1e-63 244.2 183 66.7
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 1.4e-62 243.4 183 67.2
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 3.1e-62 242.3 187 66.3
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 3.1e-62 242.3 178 68.0
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 8.9e-62 240.7 185 67.0
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 8.9e-62 240.7 183 67.2
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 1.2e-61 240.4 181 67.4
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 2.0e-61 239.6 183 66.7
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 5.8e-61 238.0 177 69.5
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 7.6e-61 237.7 178 66.9
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 7.6e-61 237.7 180 66.7
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 9.9e-61 237.3 176 67.6
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 1.3e-60 236.9 187 66.8
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 1.3e-60 236.9 183 66.1
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 1.3e-60 236.9 187 65.2
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 2.2e-60 236.1 175 66.9
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 2.2e-60 236.1 180 67.2
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 2.9e-60 235.7 178 66.9
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 6.4e-60 234.6 186 66.1
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 6.4e-60 234.6 182 67.0
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 1.4e-59 233.4 164 69.5
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 2.4e-59 232.6 182 64.3
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 4.2e-59 231.9 183 64.5
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 4.2e-59 231.9 183 65.6
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 4.2e-59 231.9 182 65.4
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 5.4e-59 231.5 170 69.4
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 5.4e-59 231.5 161 70.8
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 1.2e-58 230.3 178 62.9
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 1.6e-58 229.9 182 64.3
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 1.6e-58 229.9 148 74.3
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 4.6e-58 228.4 183 63.9
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 6.0e-58 228.0 185 64.3
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 1.3e-57 226.9 167 67.1
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 3.0e-57 225.7 159 67.3
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 3.9e-57 225.3 168 65.5
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 5.1e-57 224.9 174 64.4
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 6.6e-57 224.6 180 61.7
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 6.6e-57 224.6 155 69.7
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 6.6e-57 224.6 176 62.5
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 8.7e-57 224.2 167 67.7
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 8.7e-57 224.2 148 71.6
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 8.7e-57 224.2 155 69.7
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 1.1e-56 223.8 181 65.2
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 7.3e-56 221.1 183 63.4
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 1.6e-55 219.9 158 65.8
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 1.6e-55 219.9 159 64.8
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 3.6e-55 218.8 169 65.1
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 4.8e-55 218.4 155 70.3
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 6.2e-55 218.0 182 62.6
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 8.1e-55 217.6 186 57.5
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 1.1e-54 217.2 181 61.3
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 1.1e-54 217.2 142 72.5
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 3.1e-54 215.7 178 61.8
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 2.0e-53 213.0 162 64.8
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 2.0e-53 213.0 169 63.9
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 2.6e-53 212.6 151 68.9
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 5.8e-53 211.5 160 63.8
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 9.9e-53 210.7 154 65.6
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 1.3e-52 210.3 155 66.5
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 1.3e-52 210.3 162 64.2
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 1.7e-52 209.9 160 63.1
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 2.2e-52 209.5 154 63.6
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 1.4e-51 206.8 167 59.3
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 1.4e-51 206.8 267 46.4
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 1.9e-51 206.5 178 59.0
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 2.4e-51 206.1 168 58.3
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 2.4e-51 206.1 165 61.8
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 9.3e-51 204.1 165 61.2
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 9.3e-51 204.1 179 58.1
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 1.2e-50 203.8 146 66.4
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 1.6e-50 203.4 158 64.6
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 2.1e-50 203.0 184 57.1
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 3.5e-50 202.2 157 64.3
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 4.6e-50 201.8 152 64.5
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 4.6e-50 201.8 165 61.8
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 6.0e-50 201.4 152 64.5
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 6.0e-50 201.4 152 64.5
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 6.0e-50 201.4 152 64.5
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 7.9e-50 201.1 160 62.5
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 1.0e-49 200.7 183 57.4
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 1.0e-49 200.7 164 61.0
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 2.3e-49 199.5 155 62.6
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 3.9e-49 198.7 158 60.8
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 2.1e-47 193.0 130 69.2
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 2.8e-47 192.6 193 55.4
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 1.4e-46 190.3 192 55.7
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 4.5e-45 185.3 165 52.7
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 2.2e-44 183.0 171 50.3
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 2.3e-41 172.9 128 69.5
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 3.9e-41 172.2 156 53.8
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 3.9e-41 172.2 128 69.5
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 1.3e-39 167.2 169 55.6
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 6.2e-39 164.9 110 75.5
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 3.2e-35 152.5 118 55.9
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 5.1e-33 145.2 109 64.2
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 5.1e-33 145.2 130 50.8
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 5.7e-32 141.7 92 70.7
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 5.3e-30 135.2 111 54.1
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 6.9e-30 134.8 99 62.6
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 8.4e-28 127.9 124 54.8
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 1.9e-24 116.7 98 53.1
SMO116G0088 Selaginella moellendorffii HOM05D001526 ORTHO05D008441 1.4e-19 100.5 126 42.9
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 2.5e-19 99.8 75 60.0
Mapoly0078s0039 Marchantia polymorpha HOM05D007042 ORTHO05D008441 2.7e-18 96.3 132 41.7
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 5.7e-16 88.6 133 39.8
EL10As2g23173 Beta vulgaris HOM05D007042 ORTHO05D008441 1.6e-10 70.5 57 56.1
MCO16G209 Micromonas commoda HOM05D007042 ORTHO05D008441 6.7e-09 65.1 155 28.4
Potri.014G193150 Populus trichocarpa HOM05D007042 ORTHO05D008441 4.4e-08 62.4 65 60.0
Cre13.g604300 Chlamydomonas reinhardtii HOM05D007042 ORTHO05D008441 5.7e-08 62.0 129 28.7


User provided reference genes

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