Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2080 Punica granatum HOM05D008307 ORTHO05D010374 0.0e+00 1364.4 706 100.0
Cfa014722 Carpinus fangiana HOM05D008307 ORTHO05D010374 2.2e-57 228.0 289 46.4
Haze_11405 Corylus avellana HOM05D008307 ORTHO05D010374 6.5e-57 226.5 288 46.2
Dinv29844 Davidia involucrata HOM05D008307 ORTHO05D010374 4.2e-56 223.8 234 51.3
RcHm_v2.0_Chr4g0393941 Rosa chinensis HOM05D008307 ORTHO05D010374 2.0e-53 214.9 502 33.1
QL06p018536 Quercus lobata HOM05D008307 ORTHO05D010374 5.7e-53 213.4 271 44.3
FvH4_4g03920 Fragaria vesca HOM05D008307 ORTHO05D010374 3.1e-51 207.6 234 50.4
FAN22G1022 Fragaria x ananassa HOM05D000478 ORTHO05D010374 7.7e-50 203.0 230 50.0
MD16G1220900 Malus domestica HOM05D008307 ORTHO05D010374 1.0e-49 202.6 325 40.0
Potri.010G070001 Populus trichocarpa HOM05D008307 ORTHO05D010374 8.5e-49 199.5 221 44.8
Solyc09g090290.3 Solanum lycopersicum HOM05D008307 ORTHO05D010374 8.5e-49 199.5 373 32.4
FAN17G2370 Fragaria x ananassa HOM05D000478 ORTHO05D010374 1.9e-48 198.4 447 33.6
PGSC0003DMG400017215 Solanum tuberosum HOM05D008307 ORTHO05D010374 7.2e-48 196.4 471 29.5
Actinidia35796 Actinidia chinensis HOM05D008307 ORTHO05D010374 1.2e-47 195.7 478 32.2
TAR365G0480 Trochodendron aralioides HOM05D008307 ORTHO05D010374 1.6e-47 195.3 219 46.6
Sopen09g033190 Solanum pennellii HOM05D008307 ORTHO05D010374 2.1e-47 194.9 373 32.4
AL3G38030 Arabidopsis lyrata HOM05D008307 ORTHO05D010374 6.1e-47 193.4 221 44.3
Thhalv10020149m.g Eutrema salsugineum HOM05D008307 ORTHO05D010374 6.1e-47 193.4 213 44.1
CSS0044876 Camellia sinensis var. sinensis HOM05D008307 ORTHO05D010374 1.8e-46 191.8 676 29.4
THA.LOC104822237 Tarenaya hassleriana HOM05D008307 ORTHO05D010374 1.8e-46 191.8 198 50.0
Aqoxy7G00920 Aquilegia oxysepala HOM05D008307 ORTHO05D010374 3.0e-46 191.0 221 45.2
AT3G23370 Arabidopsis thaliana HOM05D008307 ORTHO05D010374 5.2e-46 190.3 221 43.4
CARHR099340 Cardamine hirsuta HOM05D008307 ORTHO05D010374 2.6e-45 188.0 214 43.9
Peaxi162Scf00041g00209 Petunia axillaris HOM05D008307 ORTHO05D010374 3.3e-45 187.6 348 34.8
Rhsim04G0177000 Rhododendron simsii HOM05D008307 ORTHO05D010374 3.3e-45 187.6 209 49.8
CAN.G220.11 Capsicum annuum HOM05D008307 ORTHO05D010374 5.7e-45 186.8 372 31.5
DCAR_024261 Daucus carota HOM05D008307 ORTHO05D010374 2.2e-44 184.9 222 44.1
Migut.N00284 Erythranthe guttata HOM05D008307 ORTHO05D010374 2.8e-44 184.5 208 47.1
MBI07_g31095_MAGBIO Magnolia biondii HOM05D008307 ORTHO05D010374 6.3e-44 183.3 222 44.6
TWI73G0959 Tripterygium wilfordii HOM05D008307 ORTHO05D010374 1.4e-43 182.2 592 30.2
Carub.0003s2363 Capsella rubella HOM05D008307 ORTHO05D010374 9.1e-43 179.5 213 42.3
A07p09070 Brassica napus HOM05D008307 ORTHO05D010374 2.0e-42 178.3 215 40.9
BraA07t28701Z Brassica rapa HOM05D008307 ORTHO05D010374 4.5e-42 177.2 215 40.9
C07p14040 Brassica napus HOM05D008307 ORTHO05D010374 7.7e-42 176.4 215 40.5
BcaC06g35512 Brassica carinata HOM05D008307 ORTHO05D010374 1.3e-41 175.6 215 40.5
BolC7t41901H Brassica oleracea HOM05D008307 ORTHO05D010374 1.3e-41 175.6 215 40.5
Nitab4.5_0000044g0470 Nicotiana tabacum HOM05D008307 ORTHO05D010374 5.0e-41 173.7 321 33.3
vmacro08510 Vaccinium macrocarpon HOM05D008307 ORTHO05D010374 8.5e-41 172.9 210 47.6
Nitab4.5_0007280g0010 Nicotiana tabacum HOM05D008307 ORTHO05D010374 1.6e-39 168.7 381 30.2
ATR0736G143 Amborella trichopoda HOM05D008307 ORTHO05D010374 2.7e-39 167.9 282 40.1
DCAR_027325 Daucus carota HOM05D008307 ORTHO05D010374 5.7e-37 160.2 454 30.4
Prupe.1G041400 Prunus persica HOM05D008307 ORTHO05D010374 1.4e-35 155.6 581 27.2
FAN12G4262 Fragaria x ananassa HOM05D000478 ORTHO05D010374 1.0e-33 149.4 166 51.8
SGA_v2.0_scaffold31G12662 Striga asiatica HOM05D008307 ORTHO05D010374 1.7e-33 148.7 210 38.6
SEGI_00673 Sequoiadendron giganteum HOM05D008307 ORTHO05D010374 2.1e-31 141.7 210 38.1
COL.COLO4_15896 Corchorus olitorius HOM05D008307 ORTHO05D010374 3.6e-31 141.0 218 41.7
Cc03_g05710 Coffea canephora HOM05D008307 ORTHO05D010374 6.5e-25 120.2 134 40.3
SMO329G0060 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 2.7e-18 98.2 134 38.8
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 1.7e-17 95.5 172 36.0
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 4.0e-14 84.3 209 29.2
SMO165G0083 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 7.5e-13 80.1 219 28.3
Gorai.011G175900 Gossypium raimondii HOM05D008307 ORTHO05D010374 2.9e-12 78.2 220 30.0
Gohir.D10G155880 Gossypium hirsutum HOM05D008307 ORTHO05D010374 3.7e-12 77.8 220 29.5
Thecc.04G258000 Theobroma cacao HOM05D008307 ORTHO05D010374 4.9e-12 77.4 178 33.1
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 5.4e-11 73.9 151 32.5
Mapoly0004s0145 Marchantia polymorpha HOM05D008307 ORTHO05D010374 2.1e-07 62.0 167 26.3
Thecc.04G258100 Theobroma cacao HOM05D008307 ORTHO05D010374 8.0e-07 60.1 65 46.2
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 1.0e-06 59.7 163 27.6


User provided reference genes

Program Settings