Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 2.4e-179 632.1 331 100.0
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 6.7e-97 358.2 326 61.0
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 3.7e-95 352.4 335 60.3
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 8.5e-92 341.3 330 58.2
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 8.5e-92 341.3 334 57.2
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.4e-91 340.5 328 57.0
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 2.0e-88 330.1 330 56.4
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 3.3e-88 329.3 335 56.7
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.3e-87 327.4 326 58.0
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 2.2e-87 326.6 328 58.2
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.8e-87 326.2 331 56.2
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 4.8e-87 325.5 331 56.5
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 1.8e-86 323.6 328 58.8
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 2.4e-86 323.2 332 54.8
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 2.4e-86 323.2 331 56.2
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 3.1e-86 322.8 331 55.6
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 5.3e-86 322.0 324 55.6
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 5.3e-86 322.0 331 56.5
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.5e-85 320.5 334 57.5
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 5.9e-85 318.5 328 54.0
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 5.9e-85 318.5 328 54.3
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 7.7e-85 318.2 330 54.2
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.3e-84 317.4 330 55.5
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.8e-84 315.8 327 56.3
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 5.0e-84 315.5 330 53.6
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 6.5e-84 315.1 329 54.4
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 2.5e-83 313.2 332 53.6
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 2.5e-83 313.2 332 54.5
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 3.2e-83 312.8 383 49.9
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 1.2e-82 310.8 332 53.3
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 1.2e-82 310.8 331 53.5
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 2.7e-82 309.7 331 55.3
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 6.1e-82 308.5 332 53.3
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 7.9e-82 308.1 331 54.1
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 3.0e-81 306.2 331 52.9
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 3.9e-81 305.8 329 54.7
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 3.9e-81 305.8 329 54.1
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 6.7e-81 305.1 334 55.1
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 7.4e-80 301.6 332 52.4
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 1.3e-79 300.8 332 53.3
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 2.8e-79 299.7 330 52.4
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-78 297.7 335 52.8
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 3.1e-78 296.2 330 53.6
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 1.2e-77 294.3 330 52.1
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 3.5e-77 292.7 331 52.9
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 3.5e-77 292.7 331 50.8
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.7e-76 290.4 332 52.1
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 2.2e-76 290.0 338 51.8
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 5.0e-76 288.9 330 50.6
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 7.2e-75 285.0 332 49.4
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.4e-73 280.8 332 50.9
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 1.8e-73 280.4 331 50.8
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 3.0e-73 279.6 319 53.3
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.5e-72 277.3 332 50.0
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 2.0e-72 276.9 331 48.0
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 2.0e-72 276.9 330 50.9
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 4.8e-71 272.3 321 52.6
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 8.2e-71 271.6 328 51.2
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 3.1e-70 269.6 331 48.0
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 1.6e-69 267.3 336 50.3
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 2.0e-69 266.9 323 50.2
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 2.7e-69 266.5 333 47.4
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 2.7e-69 266.5 303 54.5
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 4.5e-69 265.8 331 49.2
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.7e-68 263.8 301 50.8
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.7e-68 263.8 288 52.4
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 1.7e-68 263.8 329 48.0
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 5.0e-68 262.3 330 49.7
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 5.0e-68 262.3 330 49.1
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.5e-67 260.8 331 46.8
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 3.2e-67 259.6 329 46.5
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 3.2e-67 259.6 322 51.2
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 9.4e-67 258.1 331 46.8
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 1.6e-66 257.3 326 48.8
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 3.6e-66 256.1 321 47.4
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 3.6e-66 256.1 389 43.7
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 6.1e-66 255.4 401 42.6
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 6.1e-66 255.4 329 49.2
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 6.1e-66 255.4 329 49.2
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 8.0e-66 255.0 329 49.5
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.0e-65 254.6 331 47.4
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 4.0e-65 252.7 332 46.7
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 1.5e-64 250.8 369 44.7
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 3.7e-63 246.1 301 48.2
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 4.8e-63 245.7 266 50.8
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.4e-62 244.2 326 44.5
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.4e-62 244.2 324 47.5
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.3e-60 237.7 321 47.0
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.7e-60 237.3 330 47.0
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 2.9e-60 236.5 338 45.0
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 2.9e-60 236.5 389 41.6
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 3.8e-60 236.1 392 44.1
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 5.0e-60 235.7 331 45.0
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 2.5e-59 233.4 340 45.6
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 5.5e-59 232.3 331 45.9
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 7.2e-59 231.9 327 44.6
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.6e-58 230.7 331 45.6
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.0e-57 228.0 271 51.3
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 3.0e-57 226.5 362 43.4
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 8.8e-57 224.9 326 44.5
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 1.7e-55 220.7 298 46.3
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 1.1e-54 218.0 329 45.0
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.1e-54 218.0 331 45.3
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-54 217.6 324 44.4
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 1.4e-54 217.6 324 44.4
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.4e-54 217.6 339 44.2
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 7.0e-54 215.3 313 45.7
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 9.2e-54 214.9 332 42.5
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 1.2e-53 214.5 348 42.8
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 1.6e-53 214.2 362 40.3
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 6.6e-52 208.8 359 42.6
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.1e-51 208.0 335 40.6
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 3.3e-51 206.5 288 42.7
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 1.6e-50 204.1 326 41.7
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.6e-50 204.1 308 44.2
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 2.1e-50 203.8 334 42.8
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.0e-49 201.4 268 44.0
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 2.3e-49 200.3 289 42.9
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.3e-47 194.5 383 37.3
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.7e-47 194.1 309 42.4
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 3.7e-47 193.0 331 39.9
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 8.3e-47 191.8 289 41.9
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 1.4e-46 191.0 309 43.0
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.2e-45 188.0 389 38.0
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.2e-45 188.0 301 39.2
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 5.9e-45 185.7 329 41.9
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 2.3e-44 183.7 291 39.2
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 3.3e-43 179.9 310 40.0
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 2.1e-42 177.2 195 50.8
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 1.8e-41 174.1 209 46.4
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 2.6e-40 170.2 268 41.4
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 2.6e-40 170.2 148 61.5
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 4.4e-40 169.5 315 41.0
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 4.4e-40 169.5 146 61.0
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.2e-39 167.2 313 39.9
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 3.2e-38 163.3 263 40.7
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 7.0e-38 162.2 355 35.2
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 3.0e-36 156.8 165 52.7
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.0e-36 156.0 150 54.0
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 6.6e-36 155.6 150 54.0
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.1e-35 154.8 154 57.1
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 3.1e-33 146.7 149 57.0
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 1.2e-32 144.8 227 40.5
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.5e-32 144.4 156 46.8
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 5.8e-32 142.5 310 35.2
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 3.7e-31 139.8 327 34.6
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 4.9e-31 139.4 287 36.9
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 1.9e-30 137.5 165 49.7
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 7.8e-29 132.1 228 45.6
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.1e-28 129.4 279 35.1
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 1.5e-27 127.9 129 55.8
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 5.6e-27 125.9 222 38.3
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.3e-25 120.6 359 30.4
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 5.2e-25 119.4 181 44.2
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 8.9e-25 118.6 134 53.7
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 7.6e-24 115.5 173 44.5
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 1.3e-23 114.8 135 53.3
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 1.1e-22 111.7 263 31.9
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 2.4e-22 110.5 105 61.9
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 6.0e-21 105.9 263 32.3
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.5e-19 101.3 198 37.9
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 9.6e-19 98.6 216 36.6
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 9.6e-19 98.6 216 36.6
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 3.6e-18 96.7 220 38.6
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 4.7e-18 96.3 86 59.3
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 4.0e-17 93.2 77 59.7
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 4.0e-17 93.2 148 37.8
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 4.0e-17 93.2 148 37.8
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 9.9e-16 88.6 324 28.1
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.6e-13 81.3 208 30.8
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 2.1e-13 80.9 202 35.1
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.7e-13 80.5 48 77.1
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 7.3e-11 72.4 98 48.0
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 2.8e-10 70.5 51 68.6
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 2.8e-10 70.5 59 59.3
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 4.0e-09 66.6 143 37.8
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 2.6e-08 63.9 86 43.0
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 9.9e-08 62.0 225 28.9
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.2e-07 60.8 71 50.7
Pp3c4_27130 Physcomitrium patens HOM05D019185 ORTHO05D030113 2.4e-06 57.4 86 37.2
AagrBONN_evm.TU.Sc2ySwM_368.2183 Anthoceros agrestis HOM05D019185 ORTHO05D031160 9.3e-06 55.5 82 36.6


User provided reference genes

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