Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2002 Punica granatum HOM05D007126 ORTHO05D008974 0.0e+00 1092.0 575 100.0
Eucgr.D01749 Eucalyptus grandis HOM05D007126 ORTHO05D008974 1.3e-228 796.6 589 74.2
CiPaw.11G120500 Carya illinoinensis HOM05D007126 ORTHO05D008974 1.0e-225 786.9 574 73.7
QL02p030251 Quercus lobata HOM05D007126 ORTHO05D008974 4.6e-218 761.5 598 69.1
GSVIVG01019542001 Vitis vinifera HOM05D007126 ORTHO05D008974 2.5e-216 755.7 572 70.8
CANSAT21G1075 Cannabis sativa HOM05D007126 ORTHO05D008974 2.1e-215 752.7 573 70.2
Prupe.5G121000 Prunus persica HOM05D007126 ORTHO05D008974 1.4e-214 750.0 568 71.0
Manes.01G047820 Manihot esculenta HOM05D007126 ORTHO05D008974 4.4e-213 745.0 586 68.6
MD06G1108400 Malus domestica HOM05D007126 ORTHO05D008974 5.8e-213 744.6 569 69.8
Thecc.03G299000 Theobroma cacao HOM05D007126 ORTHO05D008974 1.4e-211 740.0 582 68.7
Atru.chr9.1971 Acer truncatum HOM05D007126 ORTHO05D008974 4.1e-211 738.4 583 68.3
Atru.chr9.1985 Acer truncatum HOM05D007126 ORTHO05D008974 4.1e-211 738.4 583 68.3
Haze_09075 Corylus avellana HOM05D007126 ORTHO05D008974 9.2e-211 737.3 643 65.0
RcHm_v2.0_Chr7g0194681 Rosa chinensis HOM05D007126 ORTHO05D008974 1.6e-210 736.5 546 72.5
Actinidia22167 Actinidia chinensis HOM05D007126 ORTHO05D008974 1.0e-209 733.8 584 69.0
CSS0001738 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 1.3e-209 733.4 588 69.2
Ciclev10019342m.g Citrus clementina HOM05D007126 ORTHO05D008974 1.1e-208 730.3 552 69.6
Gorai.008G255000 Gossypium raimondii HOM05D007126 ORTHO05D008974 1.1e-208 730.3 582 68.4
TWI15G1063 Tripterygium wilfordii HOM05D007126 ORTHO05D008974 1.1e-208 730.3 545 70.8
Gohir.A12G236900 Gossypium hirsutum HOM05D007126 ORTHO05D008974 2.5e-208 729.2 582 68.2
Gohir.D12G238100 Gossypium hirsutum HOM05D007126 ORTHO05D008974 3.3e-208 728.8 582 68.4
Potri.001G090800 Populus trichocarpa HOM05D007126 ORTHO05D008974 6.2e-207 724.5 582 69.2
Lj4g0010714 Lotus japonicus HOM05D007126 ORTHO05D008974 1.1e-206 723.8 575 68.2
Duzib205G0473 Durio zibethinus HOM05D007126 ORTHO05D008974 1.4e-206 723.4 580 68.4
Nitab4.5_0000726g0050 Nicotiana tabacum HOM05D007126 ORTHO05D008974 6.8e-206 721.1 576 67.4
Potri.003G140800 Populus trichocarpa HOM05D007126 ORTHO05D008974 6.8e-206 721.1 578 68.2
CSS0007498 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 3.4e-205 718.8 583 68.1
Glyma.08G023000 Glycine max HOM05D007126 ORTHO05D008974 4.4e-205 718.4 580 66.9
Hma1.2p1_0440F.1_g153370 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 2.4e-203 712.6 514 73.5
VMungo0251G2926 Vigna mungo HOM05D007126 ORTHO05D008974 3.2e-203 712.2 577 66.0
CsaV3_4G006650 Cucumis sativus L. HOM05D007126 ORTHO05D008974 2.7e-202 709.1 580 66.6
HanXRQChr17g0534861 Helianthus annuus HOM05D007126 ORTHO05D008974 7.8e-202 707.6 573 66.7
Sed0013130 Sechium edule HOM05D007126 ORTHO05D008974 2.3e-201 706.1 576 66.0
PGSC0003DMG400004995 Solanum tuberosum HOM05D007126 ORTHO05D008974 4.3e-200 701.8 574 66.0
ECA246G3461 Erigeron canadensis HOM05D007126 ORTHO05D008974 9.6e-200 700.7 484 74.2
Medtr8g099525 Medicago truncatula HOM05D007126 ORTHO05D008974 2.1e-199 699.5 516 70.0
Sopen12g024410 Solanum pennellii HOM05D007126 ORTHO05D008974 3.1e-198 695.7 531 68.7
BraA09t37117Z Brassica rapa HOM05D007126 ORTHO05D008974 1.3e-196 690.3 514 68.5
A09p14710 Brassica napus HOM05D007126 ORTHO05D008974 2.2e-196 689.5 507 69.6
Migut.A00631 Erythranthe guttata HOM05D007126 ORTHO05D008974 4.9e-196 688.3 546 67.4
Aa31LG2G1430 Aethionema arabicum HOM05D007126 ORTHO05D008974 1.1e-195 687.2 517 68.5
BolC9t54678H Brassica oleracea HOM05D007126 ORTHO05D008974 1.4e-195 686.8 507 69.6
Sp2g00310 Schrenkiella parvula HOM05D007126 ORTHO05D008974 1.4e-195 686.8 508 69.1
BcaC04g22569 Brassica carinata HOM05D007126 ORTHO05D008974 1.9e-195 686.4 507 69.8
Solyc12g055940.3 Solanum lycopersicum HOM05D007126 ORTHO05D008974 4.2e-195 685.3 591 64.0
CAN.G390.5 Capsicum annuum HOM05D007126 ORTHO05D008974 7.1e-195 684.5 576 64.8
BcaB07g31464 Brassica carinata HOM05D007126 ORTHO05D008974 2.7e-194 682.6 565 64.8
Hund11386 Selenicereus undatus HOM05D007126 ORTHO05D008974 7.8e-194 681.0 583 64.0
Sc22g0004970 Simmondsia chinensis HOM05D007126 ORTHO05D008974 1.7e-193 679.9 589 63.5
ClCG07G011560 Citrullus lanatus HOM05D007126 ORTHO05D008974 3.0e-193 679.1 584 64.7
CARHR046500 Cardamine hirsuta HOM05D007126 ORTHO05D008974 2.5e-192 676.0 523 66.7
AL2G10420 Arabidopsis lyrata HOM05D007126 ORTHO05D008974 5.6e-192 674.9 494 69.4
FvH4_5g04720 Fragaria vesca HOM05D007126 ORTHO05D008974 1.3e-191 673.7 538 68.4
AT1G64430 Arabidopsis thaliana HOM05D007126 ORTHO05D008974 6.2e-191 671.4 494 68.6
THA.LOC104817626 Tarenaya hassleriana HOM05D007126 ORTHO05D008974 1.4e-190 670.2 520 67.3
TPR.G3456 Trifolium pratense HOM05D007126 ORTHO05D008974 2.4e-190 669.5 560 63.6
Lalb_Chr09g0332411 Lupinus albus HOM05D007126 ORTHO05D008974 3.1e-190 669.1 584 62.8
Aqoxy5G04057_Aqoxy5G04058 Aquilegia oxysepala HOM05D007126 ORTHO05D008974 9.0e-190 667.5 493 68.4
AUR62019847 Chenopodium quinoa HOM05D007126 ORTHO05D008974 9.0e-190 667.5 591 61.1
Thhalv10023389m.g Eutrema salsugineum HOM05D007126 ORTHO05D008974 2.0e-189 666.4 557 64.5
AUR62010848 Chenopodium quinoa HOM05D007126 ORTHO05D008974 3.4e-189 665.6 484 69.8
PSO063G3961 Papaver somniferum HOM05D007126 ORTHO05D008974 9.9e-189 664.1 564 63.7
Cc08_g16150 Coffea canephora HOM05D007126 ORTHO05D008974 1.7e-188 663.3 513 68.0
Oeu009966.1 Olea europaea HOM05D007126 ORTHO05D008974 2.1e-186 656.4 497 68.6
DCAR_029908 Daucus carota HOM05D007126 ORTHO05D008974 4.6e-186 655.2 457 72.4
Sabra01G0067000 Salix brachista HOM05D007126 ORTHO05D008974 1.3e-185 653.7 437 78.5
arahy.Tifrunner.gnm1.ann1.U3A0V6 Arachis hypogaea HOM05D007126 ORTHO05D008974 5.1e-185 651.7 577 63.1
Rhsim02G0244700 Rhododendron simsii HOM05D007126 ORTHO05D008974 7.3e-184 647.9 574 63.2
MBI06_g08479_MAGBIO Magnolia biondii HOM05D007126 ORTHO05D008974 1.8e-182 643.3 601 59.4
C09p17800 Brassica napus HOM05D007126 ORTHO05D008974 1.7e-180 636.7 469 69.5
Nitab4.5_0004010g0090 Nicotiana tabacum HOM05D007126 ORTHO05D008974 4.2e-179 632.1 575 61.9
Lsat_1_v5_gn_3_10920 Lactuca sativa HOM05D007126 ORTHO05D008974 6.0e-178 628.2 577 61.9
Lj2C166T10 Lonicera japonica HOM05D007126 ORTHO05D008974 1.5e-176 623.6 615 60.3
Nn1g08439 Nelumbo nucifera HOM05D007126 ORTHO05D008974 2.6e-173 612.8 583 59.2
arahy.Tifrunner.gnm1.ann1.GEY0M8 Arachis hypogaea HOM05D007126 ORTHO05D008974 3.4e-173 612.5 598 58.7
Hma1.2p1_0440F.1_g153360 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 1.1e-171 607.4 647 56.6
EL10Ac5g12922 Beta vulgaris HOM05D007126 ORTHO05D008974 6.0e-170 601.7 605 56.5
Cpa.g.sc79.28 Carica papaya HOM05D007126 ORTHO05D008974 1.8e-169 600.1 479 67.4
MELO3C016299.2 Cucumis melo HOM05D007126 ORTHO05D008974 9.6e-168 594.3 535 63.6
Peaxi162Scf00117g01130 Petunia axillaris HOM05D007126 ORTHO05D008974 2.9e-164 582.8 571 56.9
ATR0598G096 Amborella trichopoda HOM05D007126 ORTHO05D008974 2.7e-162 576.2 566 56.0
Psat7g210120 Pisum sativum HOM05D007126 ORTHO05D008974 5.1e-161 572.0 483 62.9
HPP92_007857 Vanilla planifolia HOM05D007126 ORTHO05D008974 4.3e-160 568.9 496 59.7
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 9.4e-155 551.2 531 58.2
SalBow1G1535 Salvia bowleyana HOM05D007126 ORTHO05D008974 2.3e-153 546.6 586 55.8
unitig_37.g12131 Utricularia gibba HOM05D007126 ORTHO05D008974 2.3e-153 546.6 523 57.0
SGA_v2.0_scaffold305G47987 Striga asiatica HOM05D007126 ORTHO05D008974 1.7e-151 540.4 515 59.0
Zm00001eb028190 Zea mays HOM05D007126 ORTHO05D008974 3.7e-143 512.7 536 52.2
vmacro11349 Vaccinium macrocarpon HOM05D007126 ORTHO05D008974 4.1e-142 509.2 584 52.9
Mapoly0029s0043 Marchantia polymorpha HOM05D007126 ORTHO05D008974 6.7e-137 491.9 512 50.4
Pp3c15_17220 Physcomitrium patens HOM05D007126 ORTHO05D008974 4.8e-135 485.7 485 51.5
TAR374G0215 Trochodendron aralioides HOM05D007126 ORTHO05D008974 6.3e-135 485.3 315 79.4
Phvul.002G298304 Phaseolus vulgaris HOM05D007126 ORTHO05D008974 1.4e-129 467.6 317 75.1
SMO367G1126 Selaginella moellendorffii HOM05D007126 ORTHO05D008974 2.3e-129 466.8 494 51.0
CDE08G1056 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 9.5e-115 418.3 342 59.9
CBR_g19104 Chara braunii HOM05D007126 ORTHO05D008974 2.2e-103 380.6 506 46.0
Carub.0002s0034 Capsella rubella HOM05D007126 ORTHO05D008974 6.6e-84 315.8 230 72.6
FAN18G3621 Fragaria x ananassa HOM05D007126 ORTHO05D008974 2.0e-64 251.1 260 56.5
FAN08G3578 Fragaria x ananassa HOM05D007126 ORTHO05D008974 2.1e-61 241.1 215 60.9
Carub.0002s0035 Capsella rubella HOM05D007126 ORTHO05D008974 3.0e-60 237.3 198 59.6
Cre14.g611950 Chlamydomonas reinhardtii HOM05D007126 ORTHO05D008974 6.7e-60 236.1 568 33.5
Dinv37525 Davidia involucrata HOM05D007126 ORTHO05D008974 1.2e-56 225.3 281 48.8
SEGI_23531 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 2.0e-56 224.6 199 56.3
CDE08G0877 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 2.6e-48 197.6 144 73.6
Os08g0332700 Oryza sativa ssp. japonica HOM05D007126 ORTHO05D008974 1.3e-47 195.3 245 46.9
SEGI_08908 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 3.2e-46 190.7 181 52.5
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 1.1e-41 175.6 238 48.3
Cfa021999 Carpinus fangiana HOM05D007126 ORTHO05D008974 1.0e-36 159.1 172 54.7
SEGI_34352 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 1.4e-28 132.1 111 63.1
Cpa.g.sc79.27 Carica papaya HOM05D007126 ORTHO05D008974 1.5e-22 112.1 71 87.3
FAN13G2101 Fragaria x ananassa HOM05D007126 ORTHO05D008974 5.9e-16 90.1 58 84.5
BcaC09g50327 Brassica carinata HOM05D017681 ORTHO05D019883 5.9e-08 63.5 117 35.9
BcaC04g20679 Brassica carinata HOM05D017681 ORTHO05D019883 7.7e-08 63.2 117 35.9


User provided reference genes

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