Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 0.0e+00 1084.7 559 100.0
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 1.6e-239 832.8 554 76.9
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 7.3e-237 823.9 561 75.9
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 9.8e-234 813.5 560 74.8
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 2.2e-233 812.4 560 73.8
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 8.3e-233 810.4 560 74.3
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 1.4e-232 809.7 561 74.7
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 1.6e-231 806.2 559 73.9
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 1.0e-230 803.5 560 72.7
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 1.3e-230 803.1 560 73.8
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 3.9e-230 801.6 560 73.6
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 8.6e-230 800.4 560 73.4
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 1.5e-229 799.7 560 73.0
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 1.9e-229 799.3 561 73.6
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 2.5e-229 798.9 560 72.7
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 3.3e-229 798.5 560 73.2
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 3.6e-228 795.0 556 73.0
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 8.1e-228 793.9 561 73.1
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 1.1e-227 793.5 561 73.1
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 3.1e-227 792.0 561 72.9
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 3.4e-226 788.5 562 72.2
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 4.4e-226 788.1 560 72.7
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 7.5e-226 787.3 561 72.0
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 2.9e-225 785.4 557 72.4
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 2.9e-225 785.4 575 70.6
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 1.4e-224 783.1 539 74.4
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 1.9e-224 782.7 561 72.5
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 4.1e-224 781.6 560 71.8
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 5.4e-224 781.2 556 72.8
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 1.2e-223 780.0 560 71.6
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 1.6e-223 779.6 561 72.4
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 2.7e-223 778.9 561 72.5
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 4.6e-223 778.1 561 72.0
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 7.8e-223 777.3 577 71.1
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 1.7e-222 776.2 562 71.5
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 3.0e-222 775.4 561 72.0
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 5.1e-222 774.6 555 71.2
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 5.1e-222 774.6 555 71.2
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 5.1e-222 774.6 558 72.8
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 5.1e-222 774.6 561 72.4
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 6.6e-222 774.2 563 71.6
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 1.1e-221 773.5 560 70.5
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 1.5e-221 773.1 561 72.0
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.5e-221 773.1 561 73.1
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 7.3e-221 770.8 563 71.6
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 1.2e-220 770.0 560 70.9
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 2.1e-220 769.2 560 70.7
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 3.6e-220 768.5 560 70.2
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 6.2e-220 767.7 560 70.0
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 8.1e-220 767.3 577 70.0
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 8.1e-220 767.3 555 71.2
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 1.1e-219 766.9 560 70.7
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 3.4e-218 761.9 554 71.8
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 4.4e-218 761.5 588 68.7
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 5.8e-218 761.1 561 69.2
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 2.2e-217 759.2 555 70.3
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 9.2e-216 753.8 561 69.0
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 2.1e-215 752.7 560 70.2
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 1.0e-214 750.4 560 69.8
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 1.9e-213 746.1 553 71.2
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 4.3e-213 745.0 560 68.8
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 5.6e-213 744.6 560 68.8
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 5.6e-213 744.6 569 69.1
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 7.3e-213 744.2 553 71.1
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 9.6e-213 743.8 583 67.1
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 1.6e-212 743.0 521 73.1
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 2.8e-212 742.3 561 69.7
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 3.6e-212 741.9 562 67.6
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 3.6e-212 741.9 560 68.9
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 3.6e-212 741.9 562 69.2
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 3.6e-212 741.9 567 69.5
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 1.4e-211 740.0 560 68.6
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 1.8e-211 739.6 558 68.5
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 4.4e-210 734.9 587 67.8
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 2.2e-209 732.6 569 68.0
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 6.4e-209 731.1 540 72.8
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 2.4e-208 729.2 557 67.0
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.7e-206 723.0 562 67.8
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 6.6e-206 721.1 556 68.9
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 1.1e-205 720.3 518 73.0
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 2.5e-205 719.2 558 65.6
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 9.6e-205 717.2 558 65.9
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 2.0e-202 709.5 557 66.4
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 2.6e-202 709.1 560 66.4
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 3.4e-202 708.8 559 65.8
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 4.9e-201 704.9 559 65.5
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 1.4e-200 703.4 536 68.3
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 1.9e-200 703.0 559 66.0
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 1.9e-200 703.0 559 66.9
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 1.2e-199 700.3 559 65.7
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 4.6e-199 698.4 499 72.5
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 1.0e-198 697.2 498 72.1
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 3.3e-197 692.2 559 65.8
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 1.4e-195 686.8 559 64.4
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 4.0e-195 685.3 558 63.4
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 5.3e-195 684.9 498 71.5
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 1.2e-194 683.7 558 63.3
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 9.9e-194 680.6 559 63.5
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 1.3e-193 680.2 558 63.4
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 3.8e-193 678.7 558 63.3
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 2.4e-192 676.0 555 64.1
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 7.9e-191 671.0 558 63.4
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 1.8e-190 669.8 558 63.4
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 2.3e-190 669.5 550 62.0
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 8.7e-190 667.5 559 63.1
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 8.7e-190 667.5 559 63.1
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 5.6e-189 664.8 557 62.1
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 2.2e-185 652.9 534 59.7
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 2.9e-185 652.5 497 68.6
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 6.0e-183 644.8 544 64.3
Haze_08303 Corylus avellana HOM05D004955 ORTHO05D005965 6.9e-171 604.7 428 72.9
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 5.0e-169 598.6 560 58.2
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 1.4e-166 590.5 559 56.0
SHI01417 Sapria himalayana HOM05D004955 ORTHO05D005965 2.6e-162 576.2 449 67.5
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 4.2e-160 568.9 508 61.2
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 1.6e-154 550.4 555 56.0
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 2.3e-150 536.6 565 52.6
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 8.3e-148 528.1 405 65.7
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 1.8e-147 526.9 458 63.3
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 4.1e-147 525.8 571 52.5
Dinv25184 Davidia involucrata HOM05D004955 ORTHO05D005965 2.9e-145 519.6 402 69.9
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 2.9e-145 519.6 543 52.7
Atru.chr6.1775 Acer truncatum HOM05D004955 ORTHO05D005965 3.6e-143 512.7 361 74.5
Haze_08304 Corylus avellana HOM05D004955 ORTHO05D005965 1.1e-120 438.0 407 58.7
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 2.2e-116 423.7 538 46.5
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 5.6e-112 409.1 580 42.8
Glyma.01G201400 Glycine max HOM05D004955 ORTHO05D005965 9.5e-112 408.3 298 72.1
Nn3g19414 Nelumbo nucifera HOM05D004955 ORTHO05D005965 4.3e-104 382.9 281 67.6
Cre08.g379700 Chlamydomonas reinhardtii HOM05D004955 ORTHO05D005965 1.9e-96 357.5 538 42.9
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 2.5e-96 357.1 568 41.9
Glyma.16G093333 Glycine max HOM05D004955 ORTHO05D005965 3.9e-73 280.0 198 71.2
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 6.9e-70 269.2 486 39.7
MD09G1284100 Malus domestica HOM05D004955 ORTHO05D005965 2.2e-55 221.1 371 41.2
Haze_26496 Corylus avellana HOM05D004955 ORTHO05D005965 1.8e-49 201.4 278 45.0
Glyma.16G093267 Glycine max HOM05D004955 ORTHO05D005965 8.8e-49 199.1 155 67.1
Glyma.01G201300 Glycine max HOM05D004955 ORTHO05D005965 5.0e-44 183.3 155 63.9
SEGI_27182 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 4.8e-39 166.8 269 40.1
BcaB01g01790 Brassica carinata HOM05D004955 ORTHO05D005965 6.3e-39 166.4 147 59.9
Haze_08302 Corylus avellana HOM05D004955 ORTHO05D005965 7.0e-38 162.9 192 54.7
Cc05_g03290 Coffea canephora HOM05D004955 ORTHO05D005965 1.7e-36 158.3 110 69.1
SHI01420 Sapria himalayana HOM05D004955 ORTHO05D000023 8.8e-33 146.0 108 64.8
vmacro21667 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 3.7e-31 140.6 140 52.1
BcaB01g06395 Brassica carinata HOM05D004955 ORTHO05D005965 5.4e-30 136.7 99 67.7
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 2.6e-24 117.9 131 50.4
Glyma.16G093100 Glycine max HOM05D004955 ORTHO05D005965 8.3e-23 112.8 77 68.8
CARHR185470 Cardamine hirsuta HOM05D004955 ORTHO05D005965 1.3e-20 105.5 83 61.4
ATR0149G020 Amborella trichopoda HOM05D004955 ORTHO05D005965 8.0e-18 96.3 120 49.2
Ah.04g153990 Amaranthus hybridus HOM05D004955 ORTHO05D005965 2.3e-17 94.7 213 32.4
Haze_08300 Corylus avellana HOM05D004955 ORTHO05D005965 8.9e-17 92.8 88 61.4
SEGI_05540 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.0e-12 79.3 72 54.2


User provided reference genes

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