Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1937 Punica granatum HOM05D002924 ORTHO05D003122 2.4e-88 328.9 182 100.0
Duzib160G0328 Durio zibethinus HOM05D002924 ORTHO05D003122 4.9e-17 92.0 147 40.1
Duzib235G1474 Durio zibethinus HOM05D002924 ORTHO05D003122 4.9e-17 92.0 148 40.5
Rhsim13G0114700 Rhododendron simsii HOM05D002924 ORTHO05D003122 4.9e-17 92.0 147 43.5
Actinidia39583 Actinidia chinensis HOM05D002924 ORTHO05D003122 8.4e-17 91.3 148 40.5
Sed0024828 Sechium edule HOM05D002924 ORTHO05D003122 8.4e-17 91.3 150 43.3
Atru.chr10.1192 Acer truncatum HOM05D002924 ORTHO05D003122 1.4e-16 90.5 149 45.6
Ciclev10017198m.g Citrus clementina HOM05D002924 ORTHO05D003122 1.4e-16 90.5 148 41.2
Thecc.06G148600 Theobroma cacao HOM05D002924 ORTHO05D003122 1.9e-16 90.1 151 44.4
CSS0028188 Camellia sinensis var. sinensis HOM05D002924 ORTHO05D003122 4.2e-16 89.0 167 42.5
Dinv32237 Davidia involucrata HOM05D002924 ORTHO05D003122 5.4e-16 88.6 153 41.2
Glyma.05G141200 Glycine max HOM05D002924 ORTHO05D003122 9.3e-16 87.8 152 42.1
CiPaw.09G122300 Carya illinoinensis HOM05D002924 ORTHO05D003122 1.2e-15 87.4 154 48.7
vmacro03333 Vaccinium macrocarpon HOM05D002924 ORTHO05D003122 1.2e-15 87.4 147 42.9
Gohir.A10G041900 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.6e-15 87.0 152 41.4
Gohir.D10G042800 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.6e-15 87.0 152 41.4
Sed0007473 Sechium edule HOM05D002924 ORTHO05D003122 1.6e-15 87.0 149 40.3
Manes.15G122900 Manihot esculenta HOM05D002924 ORTHO05D003122 2.1e-15 86.7 157 42.0
Manes.17G071600 Manihot esculenta HOM05D002924 ORTHO05D003122 2.1e-15 86.7 153 46.4
QL05p059253 Quercus lobata HOM05D002924 ORTHO05D003122 2.7e-15 86.3 159 39.6
Glyma.08G096500 Glycine max HOM05D002924 ORTHO05D003122 4.6e-15 85.5 149 40.9
Gorai.011G045300 Gossypium raimondii HOM05D002924 ORTHO05D003122 4.6e-15 85.5 152 40.8
FAN16G0603 Fragaria x ananassa HOM05D002924 ORTHO05D003122 6.0e-15 85.1 159 41.5
Gohir.A09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 6.0e-15 85.1 148 37.8
Dinv05213 Davidia involucrata HOM05D002924 ORTHO05D003122 7.9e-15 84.7 158 40.5
FvH4_3g05370 Fragaria vesca HOM05D002924 ORTHO05D003122 1.0e-14 84.3 159 40.9
Gohir.D09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.3e-14 84.0 148 40.5
Gorai.006G092400 Gossypium raimondii HOM05D002924 ORTHO05D003122 1.3e-14 84.0 148 40.5
Lj4g0026158 Lotus japonicus HOM05D002924 ORTHO05D003122 1.3e-14 84.0 158 44.3
COL.COLO4_31051 Corchorus olitorius HOM05D002924 ORTHO05D003122 1.8e-14 83.6 149 39.6
FAN25G1226 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.8e-14 83.6 159 39.6
BcaB03g12198 Brassica carinata HOM05D002924 ORTHO05D003122 2.3e-14 83.2 149 38.9
CANSAT35G0631 Cannabis sativa HOM05D002924 ORTHO05D003122 2.3e-14 83.2 159 44.0
CsaV3_6G051810 Cucumis sativus L. HOM05D002924 ORTHO05D003122 2.3e-14 83.2 100 50.0
BcaC01g00158 Brassica carinata HOM05D002924 ORTHO05D003122 3.0e-14 82.8 149 38.3
A08p24680 Brassica napus HOM05D002924 ORTHO05D003122 3.0e-14 82.8 149 38.3
BolC3t19897H Brassica oleracea HOM05D002924 ORTHO05D003122 3.0e-14 82.8 149 38.3
BraA08t34423Z Brassica rapa HOM05D002924 ORTHO05D003122 3.0e-14 82.8 149 38.3
MELO3C007125.2 Cucumis melo HOM05D002924 ORTHO05D003122 3.0e-14 82.8 99 47.5
QL05p057398 Quercus lobata HOM05D002924 ORTHO05D003122 3.9e-14 82.4 157 38.9
Sabra11G0066500 Salix brachista HOM05D002924 ORTHO05D003122 3.9e-14 82.4 152 38.2
arahy.Tifrunner.gnm1.ann1.IG3UT7 Arachis hypogaea HOM05D002924 ORTHO05D003122 5.1e-14 82.0 151 39.1
ClCG01G024700 Citrullus lanatus HOM05D002924 ORTHO05D003122 5.1e-14 82.0 99 48.5
Potri.011G083900 Populus trichocarpa HOM05D002924 ORTHO05D003122 5.1e-14 82.0 150 38.0
Actinidia07706 Actinidia chinensis HOM05D002924 ORTHO05D003122 6.7e-14 81.6 150 40.7
Actinidia18522 Actinidia chinensis HOM05D002924 ORTHO05D003122 6.7e-14 81.6 160 45.0
CiPaw.10G090800 Carya illinoinensis HOM05D002924 ORTHO05D003122 8.7e-14 81.3 157 47.8
Gohir.A05G147700 Gossypium hirsutum HOM05D002924 ORTHO05D003122 8.7e-14 81.3 148 37.2
ClCG03G006750 Citrullus lanatus HOM05D002924 ORTHO05D003122 1.1e-13 80.9 156 37.8
GSVIVG01021514001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.1e-13 80.9 147 46.9
MSTRG.16253 Avicennia marina HOM05D002924 ORTHO05D003122 1.5e-13 80.5 158 39.9
FAN11G1040 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.5e-13 80.5 160 40.6
FAN21G1101 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.5e-13 80.5 159 39.6
Gorai.009G154300 Gossypium raimondii HOM05D002924 ORTHO05D003122 1.5e-13 80.5 150 37.3
Lalb_Chr15g0086781 Lupinus albus HOM05D002924 ORTHO05D003122 1.9e-13 80.1 152 40.8
GSVIVG01021516001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.9e-13 80.1 147 44.2
C03p76420 Brassica napus HOM05D002924 ORTHO05D003122 2.5e-13 79.7 149 37.6
Cpa.g.sc17.12 Carica papaya HOM05D002924 ORTHO05D003122 2.5e-13 79.7 154 39.0
MD05G1282000 Malus domestica HOM05D002924 ORTHO05D003122 2.5e-13 79.7 105 45.7
Nitab4.5_0009991g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 2.5e-13 79.7 148 39.2
Gohir.D05G150200 Gossypium hirsutum HOM05D002924 ORTHO05D003122 3.3e-13 79.3 149 38.3
Eucgr.D00289 Eucalyptus grandis HOM05D002924 ORTHO05D003122 4.3e-13 79.0 147 37.4
Nitab4.5_0005246g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 4.3e-13 79.0 152 38.8
RcHm_v2.0_Chr5g0014381 Rosa chinensis HOM05D002924 ORTHO05D003122 7.4e-13 78.2 159 37.1
Sed0009253 Sechium edule HOM05D002924 ORTHO05D003122 7.4e-13 78.2 148 38.5
Peaxi162Scf00317g00121 Petunia axillaris HOM05D002924 ORTHO05D003122 1.3e-12 77.4 154 39.6
GSVIVG01007188001 Vitis vinifera HOM05D002924 ORTHO05D003122 2.1e-12 76.6 99 46.5
Nitab4.5_0001531g0020 Nicotiana tabacum HOM05D002924 ORTHO05D003122 2.8e-12 76.3 152 38.2
Prupe.4G082500 Prunus persica HOM05D002924 ORTHO05D003122 2.8e-12 76.3 151 45.7
Lalb_Chr18g0055361 Lupinus albus HOM05D002924 ORTHO05D003122 4.8e-12 75.5 151 35.8
Peaxi162Scf00317g00117 Petunia axillaris HOM05D002924 ORTHO05D003122 4.8e-12 75.5 154 37.7
TAR626G1845 Trochodendron aralioides HOM05D002924 ORTHO05D003122 4.8e-12 75.5 150 40.0
PGR083G2757 Punica granatum HOM05D002924 ORTHO05D003122 6.2e-12 75.1 154 37.0
Hund21543 Selenicereus undatus HOM05D002924 ORTHO05D003122 6.2e-12 75.1 151 45.0
GSVIVG01021519001 Vitis vinifera HOM05D002924 ORTHO05D003122 6.2e-12 75.1 156 42.3
Cc00_g01970 Coffea canephora HOM05D002924 ORTHO05D003122 8.1e-12 74.7 155 37.4
Glyma.15G093100 Glycine max HOM05D002924 ORTHO05D003122 8.1e-12 74.7 153 35.9
BcaC01g00164 Brassica carinata HOM05D002924 ORTHO05D003122 1.1e-11 74.3 149 35.6
RcHm_v2.0_Chr5g0014391 Rosa chinensis HOM05D002924 ORTHO05D003122 1.1e-11 74.3 151 44.4
Eucgr.E02416 Eucalyptus grandis HOM05D002924 ORTHO05D003122 1.4e-11 73.9 103 49.5
HanXRQChr15g0482111 Helianthus annuus HOM05D002924 ORTHO05D003122 1.4e-11 73.9 148 37.2
Nitab4.5_0001531g0050 Nicotiana tabacum HOM05D002924 ORTHO05D003122 1.4e-11 73.9 99 47.5
Migut.H01355 Erythranthe guttata HOM05D002924 ORTHO05D003122 1.8e-11 73.6 151 39.1
MBI02_g15230_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 1.8e-11 73.6 147 34.7
MD05G1282100 Malus domestica HOM05D002924 ORTHO05D003122 1.8e-11 73.6 152 34.2
Nn4g26591 Nelumbo nucifera HOM05D002924 ORTHO05D003122 1.8e-11 73.6 151 46.4
Lsat_1_v5_gn_7_28101 Lactuca sativa HOM05D002924 ORTHO05D003122 2.4e-11 73.2 152 37.5
Lj6g0009882 Lotus japonicus HOM05D002924 ORTHO05D003122 2.4e-11 73.2 158 35.4
TAR488G0001 Trochodendron aralioides HOM05D002924 ORTHO05D003122 2.4e-11 73.2 152 38.8
TWI09G0754 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 3.1e-11 72.8 147 39.5
MBI18_g24474_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 4.0e-11 72.4 98 45.9
MD10G1260700 Malus domestica HOM05D002924 ORTHO05D003122 4.0e-11 72.4 153 35.9
PGSC0003DMG400008782 Solanum tuberosum HOM05D002924 ORTHO05D003122 4.0e-11 72.4 150 36.7
Peaxi162Scf00394g00120 Petunia axillaris HOM05D002924 ORTHO05D003122 5.3e-11 72.0 151 36.4
Psat1g189800 Pisum sativum HOM05D002924 ORTHO05D003122 5.3e-11 72.0 150 34.7
PGSC0003DMG400001174 Solanum tuberosum HOM05D002924 ORTHO05D003122 5.3e-11 72.0 148 37.8
AT1G30135 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 1.2e-10 70.9 154 34.4
DCAR_007884 Daucus carota HOM05D002924 ORTHO05D003122 1.2e-10 70.9 155 33.5
MBI02_g15229_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 1.2e-10 70.9 155 35.5
TAR624G0146 Trochodendron aralioides HOM05D002924 ORTHO05D003122 1.2e-10 70.9 135 37.8
DCAR_003905 Daucus carota HOM05D002924 ORTHO05D003122 1.5e-10 70.5 106 42.5
Sp1g26000 Schrenkiella parvula HOM05D002924 ORTHO05D003122 1.5e-10 70.5 149 36.2
MBI02_g15233_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.0e-10 70.1 148 36.5
TWI53G0343 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 2.0e-10 70.1 157 35.0
VMungo0540G0736 Vigna mungo HOM05D002924 ORTHO05D003122 2.0e-10 70.1 154 35.1
ECA236G5022 Erigeron canadensis HOM05D002924 ORTHO05D003122 2.6e-10 69.7 155 38.1
Phvul.006G165800 Phaseolus vulgaris HOM05D002924 ORTHO05D003122 2.6e-10 69.7 149 39.6
Sed0008794 Sechium edule HOM05D002924 ORTHO05D003122 2.6e-10 69.7 150 36.0
MSTRG.7496 Avicennia marina HOM05D002924 ORTHO05D003122 3.4e-10 69.3 149 35.6
MELO3C001202.2 Cucumis melo HOM05D002924 ORTHO05D003122 3.4e-10 69.3 101 45.5
MSTRG.14778 Avicennia marina HOM05D002924 ORTHO05D003122 4.5e-10 68.9 153 37.3
MD09G1136800 Malus domestica HOM05D002924 ORTHO05D003122 4.5e-10 68.9 102 45.1
Potri.006G023301 Populus trichocarpa HOM05D002924 ORTHO05D003122 5.8e-10 68.6 147 36.7
SalBow8G3543 Salvia bowleyana HOM05D002924 ORTHO05D003122 5.8e-10 68.6 154 37.0
C05p28990 Brassica napus HOM05D002924 ORTHO05D003122 7.6e-10 68.2 149 34.9
CAN.G50.1 Capsicum annuum HOM05D002924 ORTHO05D003122 7.6e-10 68.2 150 36.7
Manes.15G122700 Manihot esculenta HOM05D002924 ORTHO05D003122 7.6e-10 68.2 152 35.5
Oeu031277.1 Olea europaea HOM05D002924 ORTHO05D003122 7.6e-10 68.2 154 36.4
TAR626G0560 Trochodendron aralioides HOM05D002924 ORTHO05D003122 7.6e-10 68.2 150 38.0
BcaC05g27039 Brassica carinata HOM05D002924 ORTHO05D003122 9.9e-10 67.8 149 34.2
BolC5t31621H Brassica oleracea HOM05D002924 ORTHO05D003122 9.9e-10 67.8 149 34.2
FAN16G2964 Fragaria x ananassa HOM05D002924 ORTHO05D003122 9.9e-10 67.8 152 32.2
Glyma.13G219100 Glycine max HOM05D002924 ORTHO05D003122 9.9e-10 67.8 155 42.6
Solyc08g036505.2 Solanum lycopersicum HOM05D002924 ORTHO05D003122 9.9e-10 67.8 146 36.3
BcaB07g32615 Brassica carinata HOM05D002924 ORTHO05D003122 1.3e-09 67.4 151 35.1
BraA09t39160Z Brassica rapa HOM05D002924 ORTHO05D003122 1.3e-09 67.4 149 35.6
Solyc08g036660.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 1.3e-09 67.4 151 34.4
MD17G1127000 Malus domestica HOM05D002924 ORTHO05D003122 1.7e-09 67.0 99 44.4
Medtr2g019190 Medicago truncatula HOM05D002924 ORTHO05D003122 1.7e-09 67.0 150 34.7
Psat7g082920 Pisum sativum HOM05D002924 ORTHO05D003122 1.7e-09 67.0 148 33.8
GSVIVG01021518001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.7e-09 67.0 102 44.1
PSO675G3356 Papaver somniferum HOM05D002924 ORTHO05D003122 2.9e-09 66.2 147 34.0
Psat1g194920 Pisum sativum HOM05D002924 ORTHO05D003122 2.9e-09 66.2 101 39.6
Sopen08g011170 Solanum pennellii HOM05D002924 ORTHO05D003122 3.8e-09 65.9 148 35.1
FAN21G3281 Fragaria x ananassa HOM05D002924 ORTHO05D003122 4.9e-09 65.5 152 32.9
HanXRQChr04g0114381 Helianthus annuus HOM05D002924 ORTHO05D003122 6.4e-09 65.1 152 32.9
A09p36360 Brassica napus HOM05D002924 ORTHO05D003122 8.4e-09 64.7 149 34.9
Psat1g195000 Pisum sativum HOM05D002924 ORTHO05D003122 8.4e-09 64.7 101 39.6
Aqoxy1G01686 Aquilegia oxysepala HOM05D002924 ORTHO05D003122 1.4e-08 63.9 151 33.8
CDE01G0236 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 1.4e-08 63.9 101 39.6
FvH4_3g05360 Fragaria vesca HOM05D002924 ORTHO05D003122 1.9e-08 63.5 146 35.6
arahy.Tifrunner.gnm1.ann1.P4WXL8 Arachis hypogaea HOM05D002924 ORTHO05D003122 2.4e-08 63.2 149 33.6
Sp4g16870 Schrenkiella parvula HOM05D002924 ORTHO05D003122 2.4e-08 63.2 149 34.9
EL10Ac8g19657 Beta vulgaris HOM05D002924 ORTHO05D003122 3.2e-08 62.8 99 38.4
PGSC0003DMG400008781 Solanum tuberosum HOM05D002924 ORTHO05D003122 3.2e-08 62.8 148 35.1
HPP92_011075 Vanilla planifolia HOM05D002924 ORTHO05D003122 3.2e-08 62.8 99 41.4
AL1G44040 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 4.2e-08 62.4 149 33.6
arahy.Tifrunner.gnm1.ann1.A76KD4 Arachis hypogaea HOM05D002924 ORTHO05D003122 4.2e-08 62.4 148 32.4
CARHR029250 Cardamine hirsuta HOM05D002924 ORTHO05D003122 5.5e-08 62.0 147 33.3
Medtr8g107300 Medicago truncatula HOM05D002924 ORTHO05D003122 7.1e-08 61.6 154 33.8
unitig_26.g9758 Utricularia gibba HOM05D002924 ORTHO05D003122 7.1e-08 61.6 153 32.0
Prupe.3G188200 Prunus persica HOM05D002924 ORTHO05D003122 1.6e-07 60.5 99 40.4
PGR004G2368 Punica granatum HOM05D002924 ORTHO05D003122 2.1e-07 60.1 98 37.8
THA.LOC104814306 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 2.1e-07 60.1 156 31.4
BolC4t27859H Brassica oleracea HOM05D002924 ORTHO05D003122 2.7e-07 59.7 149 34.9
Solyc08g036620.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 2.7e-07 59.7 165 33.9
SGA_v2.0_scaffold223G42810 Striga asiatica HOM05D002924 ORTHO05D003122 2.7e-07 59.7 152 36.8
TPR.G36164 Trifolium pratense HOM05D002924 ORTHO05D003122 2.7e-07 59.7 150 38.7
ATR1098G148 Amborella trichopoda HOM05D002924 ORTHO05D003122 3.5e-07 59.3 100 41.0
BraA04t18154Z Brassica rapa HOM05D002924 ORTHO05D003122 3.5e-07 59.3 151 33.8
CDE12G0054 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 3.5e-07 59.3 101 39.6
Sopen08g011410 Solanum pennellii HOM05D002924 ORTHO05D003122 3.5e-07 59.3 101 40.6
PGSC0003DMG400001178 Solanum tuberosum HOM05D002924 ORTHO05D003122 3.5e-07 59.3 150 34.0
A04p26500 Brassica napus HOM05D002924 ORTHO05D003122 4.6e-07 58.9 151 33.8
C04p63920 Brassica napus HOM05D002924 ORTHO05D003122 4.6e-07 58.9 151 33.8
Actinidia15640 Actinidia chinensis HOM05D002924 ORTHO05D003122 6.0e-07 58.5 96 52.1
Migut.M00900 Erythranthe guttata HOM05D002924 ORTHO05D003122 7.9e-07 58.2 157 30.6
CARHR128700 Cardamine hirsuta HOM05D002924 ORTHO05D003122 1.0e-06 57.8 149 33.6
Carub.0001s2837 Capsella rubella HOM05D002924 ORTHO05D003122 1.8e-06 57.0 154 33.1
AT2G34600 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 2.3e-06 56.6 167 31.1
CANSAT64G2355 Cannabis sativa HOM05D002924 ORTHO05D003122 2.3e-06 56.6 98 34.7
C03p76460 Brassica napus HOM05D002924 ORTHO05D003122 3.9e-06 55.8 92 41.3
Solyc08g036640.3 Solanum lycopersicum HOM05D002924 ORTHO05D003122 3.9e-06 55.8 150 32.0
Sopen08g011400 Solanum pennellii HOM05D002924 ORTHO05D003122 3.9e-06 55.8 150 32.0
Sc05g0006100 Simmondsia chinensis HOM05D002924 ORTHO05D003122 5.1e-06 55.5 148 32.4
AL270U10010 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 8.7e-06 54.7 154 33.1


User provided reference genes

Program Settings