Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 1.0e-166 590.1 325 100.0
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 1.0e-158 563.5 325 97.2
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 3.6e-55 219.5 316 48.7
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 4.9e-52 209.1 327 49.5
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 3.7e-47 193.0 323 46.1
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 1.1e-46 191.4 312 49.0
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.4e-46 191.0 317 44.5
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 1.4e-46 191.0 328 47.6
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 2.4e-46 190.3 334 47.6
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 4.0e-46 189.5 310 47.7
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 5.3e-46 189.1 326 47.5
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 8.4e-44 181.8 318 47.5
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 1.4e-43 181.0 328 47.3
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 1.9e-43 180.6 329 48.9
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 3.2e-43 179.9 334 45.2
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 1.2e-42 177.9 335 45.1
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 2.1e-42 177.2 310 45.8
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 2.7e-42 176.8 197 51.8
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 1.8e-41 174.1 328 44.8
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 5.1e-41 172.6 314 46.5
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 6.7e-41 172.2 314 47.1
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 1.1e-40 171.4 326 46.9
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 1.5e-40 171.0 297 44.8
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.9e-40 170.6 324 37.0
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 1.9e-40 170.6 320 46.2
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 5.7e-40 169.1 268 49.3
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 7.4e-40 168.7 328 47.9
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 9.6e-40 168.3 328 43.0
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 1.3e-39 167.9 315 42.5
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 2.8e-39 166.8 309 46.6
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 2.8e-39 166.8 308 46.1
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 4.8e-39 166.0 223 53.8
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 1.2e-37 161.4 328 42.1
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 3.4e-37 159.8 344 46.5
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 3.4e-37 159.8 283 45.9
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 5.9e-37 159.1 313 47.6
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 7.6e-37 158.7 313 45.0
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.7e-36 157.5 325 47.1
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 2.2e-36 157.1 276 45.3
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 3.8e-36 156.4 287 47.7
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 3.8e-36 156.4 313 44.4
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 4.2e-35 152.9 340 42.1
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 9.3e-35 151.8 332 43.7
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 4.6e-34 149.4 321 43.9
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 1.3e-33 147.9 329 42.9
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 1.8e-33 147.5 226 42.9
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 1.8e-33 147.5 341 43.4
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.8e-33 147.5 341 41.1
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 3.9e-33 146.4 309 43.4
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.1e-32 144.8 343 35.3
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 2.5e-32 143.7 336 43.8
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 3.3e-32 143.3 314 43.3
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 5.7e-32 142.5 343 42.6
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 1.3e-31 141.4 336 42.3
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 1.6e-31 141.0 314 42.7
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 2.8e-31 140.2 336 42.6
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 4.8e-31 139.4 317 45.1
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 1.8e-30 137.5 337 41.5
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 5.3e-30 136.0 345 36.8
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 9.1e-30 135.2 326 40.5
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 1.2e-29 134.8 336 39.3
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 3.4e-29 133.3 307 39.7
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 7.7e-29 132.1 339 41.3
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 2.2e-28 130.6 341 39.9
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 8.5e-28 128.6 283 42.4
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 9.4e-27 125.2 198 38.9
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 7.9e-26 122.1 200 35.5
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 1.4e-25 121.3 312 31.4
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 1.8e-25 120.9 315 39.7
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 6.7e-25 119.0 213 35.7
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 4.4e-24 116.3 202 39.1
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 7.4e-24 115.5 183 33.3
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 9.7e-24 115.2 206 38.3
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 1.3e-23 114.8 311 32.2
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 2.2e-23 114.0 202 36.6
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 2.2e-23 114.0 195 35.9
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 2.2e-23 114.0 343 41.4
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 2.8e-23 113.6 196 38.3
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 3.7e-23 113.2 272 31.6
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 4.8e-23 112.8 208 36.1
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 6.3e-23 112.5 278 40.6
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 8.2e-23 112.1 332 34.9
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 1.4e-22 111.3 337 39.2
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 4.1e-22 109.8 202 37.1
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 1.2e-21 108.2 280 40.7
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 2.6e-21 107.1 198 33.3
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 3.4e-21 106.7 192 40.1
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 4.5e-21 106.3 191 40.8
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 1.3e-20 104.8 338 39.1
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 2.2e-20 104.0 196 34.7
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 2.5e-19 100.5 197 46.2
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 7.2e-19 99.0 200 34.5
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 7.2e-19 99.0 206 45.6
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 1.2e-18 98.2 311 34.1
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.8e-17 94.4 317 29.7
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 1.1e-16 91.7 183 49.2
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 1.1e-16 91.7 307 37.1
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 2.6e-16 90.5 172 39.0
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 5.7e-16 89.4 300 36.7
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 1.4e-14 84.7 131 38.2
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 4.1e-14 83.2 172 39.5
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 1.6e-13 81.3 131 37.4
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 2.0e-13 80.9 167 38.3
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 4.5e-13 79.7 181 38.1
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.7e-12 77.8 187 35.3
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 5.0e-12 76.3 320 37.8
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 8.5e-12 75.5 122 37.7
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 1.1e-11 75.1 210 30.0
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 1.1e-11 75.1 337 27.3
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 1.5e-11 74.7 318 33.6
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 1.9e-11 74.3 107 36.4
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 1.9e-11 74.3 320 37.2
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.2e-11 73.6 175 49.7
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 7.2e-11 72.4 112 41.1
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 7.2e-11 72.4 160 31.2
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 1.2e-08 65.1 109 37.6
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 2.0e-08 64.3 135 36.3
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 3.3e-08 63.5 113 36.3
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 3.3e-08 63.5 174 31.0
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 8.2e-07 58.9 64 40.6
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 2.4e-06 57.4 41 65.9
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 3.1e-06 57.0 56 51.8
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 3.1e-06 57.0 57 49.1
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 5.3e-06 56.2 63 47.6
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 5.3e-06 56.2 35 71.4


User provided reference genes

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