Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 1.3e-96 356.3 167 100.0
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 1.2e-78 296.6 167 79.6
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 2.8e-75 285.4 167 77.2
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 2.0e-73 279.3 167 74.9
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.4e-73 278.5 167 75.4
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 4.4e-73 278.1 167 74.3
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 5.8e-73 277.7 167 74.9
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 7.6e-73 277.3 167 74.9
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 9.9e-73 276.9 167 74.9
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 9.9e-73 276.9 167 74.3
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 1.7e-72 276.2 167 74.9
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 2.2e-72 275.8 167 76.0
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 2.2e-72 275.8 166 74.7
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 6.4e-72 274.2 167 74.9
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 1.1e-71 273.5 167 73.7
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.4e-71 273.1 167 73.1
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 1.9e-71 272.7 167 74.3
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 2.4e-71 272.3 167 73.7
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 3.2e-71 271.9 167 73.7
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 3.2e-71 271.9 167 74.9
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 4.2e-71 271.6 167 73.1
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 2.7e-70 268.9 167 73.1
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 3.5e-70 268.5 167 73.1
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 3.5e-70 268.5 167 74.3
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 3.5e-70 268.5 167 74.3
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 3.5e-70 268.5 167 74.3
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 1.0e-69 266.9 167 72.5
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.3e-69 266.5 168 72.6
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 1.3e-69 266.5 167 72.5
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 1.7e-69 266.2 167 73.1
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 2.3e-69 265.8 167 73.1
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 3.0e-69 265.4 166 72.3
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 3.0e-69 265.4 167 71.9
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 5.1e-69 264.6 167 71.3
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 5.1e-69 264.6 167 71.3
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 5.1e-69 264.6 167 71.9
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.5e-68 263.1 167 73.1
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 4.3e-68 261.5 167 71.9
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 5.6e-68 261.2 167 69.5
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 5.6e-68 261.2 167 69.5
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 9.6e-68 260.4 167 71.9
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 2.1e-67 259.2 167 70.7
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 2.8e-67 258.8 167 71.3
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 3.6e-67 258.5 167 70.1
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 8.1e-67 257.3 164 68.3
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 8.1e-67 257.3 168 69.6
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 8.1e-67 257.3 168 69.6
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 1.1e-66 256.9 168 70.2
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 1.1e-66 256.9 168 70.2
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 1.4e-66 256.5 168 69.6
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 1.4e-66 256.5 167 70.1
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 2.4e-66 255.8 168 69.0
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 2.4e-66 255.8 168 69.0
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 2.4e-66 255.8 166 70.5
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 3.1e-66 255.4 167 68.3
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 3.1e-66 255.4 165 70.3
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 5.3e-66 254.6 167 68.3
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 6.9e-66 254.2 168 72.0
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 6.9e-66 254.2 167 67.1
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 9.0e-66 253.8 168 69.6
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.2e-65 253.4 164 68.3
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 1.2e-65 253.4 167 68.3
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 1.2e-65 253.4 168 69.0
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 4.5e-65 251.5 168 69.0
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 5.8e-65 251.1 165 69.1
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 5.8e-65 251.1 167 66.5
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 5.8e-65 251.1 164 67.1
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 7.6e-65 250.8 167 67.1
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 1.3e-64 250.0 174 66.7
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 1.7e-64 249.6 168 68.5
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 2.2e-64 249.2 168 67.9
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 2.9e-64 248.8 178 66.3
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 4.9e-64 248.1 189 61.9
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 4.9e-64 248.1 167 67.7
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 8.4e-64 247.3 167 67.1
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 1.1e-63 246.9 167 68.3
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 1.1e-63 246.9 167 68.3
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 1.1e-63 246.9 167 67.7
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.9e-63 246.1 159 69.8
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 1.9e-63 246.1 166 66.9
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 4.2e-63 245.0 168 66.7
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 9.3e-63 243.8 167 66.5
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 1.2e-62 243.4 164 64.0
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.1e-62 242.7 166 65.7
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 2.7e-62 242.3 167 66.5
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 4.6e-62 241.5 167 65.9
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 6.0e-62 241.1 203 58.6
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 1.3e-61 240.0 166 65.1
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 2.3e-61 239.2 168 67.9
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.3e-61 239.2 166 64.5
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 3.0e-61 238.8 167 64.7
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 5.1e-61 238.0 167 61.7
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 2.5e-60 235.7 167 67.1
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 9.6e-60 233.8 167 65.3
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.8e-59 232.3 179 60.9
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 1.1e-58 230.3 219 52.5
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 3.1e-58 228.8 167 62.9
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 4.0e-58 228.4 165 64.8
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 1.7e-56 223.0 189 59.3
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 2.1e-54 216.1 131 72.5
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 2.7e-54 215.7 167 56.3
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 3.5e-54 215.3 134 72.4
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 7.9e-54 214.2 126 77.0
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.0e-53 213.8 189 54.0
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 1.1e-52 210.3 127 71.7
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 1.1e-52 210.3 166 57.8
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 1.5e-52 209.9 166 58.4
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 2.8e-51 205.7 134 69.4
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 1.4e-50 203.4 166 57.2
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 2.4e-50 202.6 165 56.4
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 2.6e-49 199.1 167 53.9
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.0e-48 197.2 178 50.6
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.1e-47 193.7 175 52.0
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 1.9e-47 193.0 167 55.7
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 1.0e-45 187.2 177 53.1
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 5.1e-45 184.9 128 64.1
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 3.3e-44 182.2 164 52.4
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 7.4e-44 181.0 167 53.3
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 2.8e-43 179.1 165 53.9
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 6.3e-43 177.9 166 50.0
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.1e-42 177.2 123 61.8
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.1e-42 177.2 167 52.1
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 6.9e-42 174.5 167 52.7
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.0e-42 174.1 133 58.6
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 1.2e-41 173.7 165 52.1
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.2e-40 169.5 163 51.5
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 1.9e-39 166.4 163 53.4
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 5.1e-37 158.3 131 60.3
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 6.7e-37 157.9 97 72.2
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 6.7e-37 157.9 97 72.2
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 6.7e-37 157.9 151 51.0
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 4.3e-36 155.2 140 50.0
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.4e-34 150.2 111 57.7
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 2.6e-33 146.0 98 65.3
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 7.7e-33 144.4 127 52.0
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.7e-27 126.7 164 39.6
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 1.1e-26 124.0 97 59.8
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.4e-26 123.6 80 71.2
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.4e-26 123.6 164 39.6
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 2.2e-24 116.3 152 45.4
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 2.9e-24 115.9 183 41.0
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 1.6e-22 110.2 112 50.9
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.8e-21 106.7 126 39.7
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.7e-19 100.1 91 53.8
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 3.7e-19 99.0 104 51.9
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.8e-16 89.0 60 66.7
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.1e-15 87.4 64 64.1
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.1e-15 87.4 64 64.1
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.2e-15 85.9 65 63.1
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 7.2e-15 84.7 60 65.0
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 7.2e-15 84.7 169 32.5
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-13 80.5 64 60.9
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.0e-13 79.3 64 59.4
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 6.7e-13 78.2 54 61.1
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 4.4e-12 75.5 117 33.3
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 5.3e-10 68.6 46 63.0
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 7.7e-09 64.7 54 50.0
Thecc.06G107200 Theobroma cacao HOM05D004267 ORTHO05D044750 1.9e-07 60.1 128 29.7
AUR62038391 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.4e-07 57.8 40 65.0
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 1.2e-06 57.4 41 58.5
MCO11G136 Micromonas commoda HOM05D004267 ORTHO05D005267 1.6e-06 57.0 173 29.5
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 2.1e-06 56.6 40 70.0
Hma1.2p1_2790F.1_g328600 Hydrangea macrophylla HOM05D005814 ORTHO05D006821 2.7e-06 56.2 36 63.9
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 4.7e-06 55.5 50 62.0


User provided reference genes

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