Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 0.0e+00 1220.3 609 100.0
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 1.2e-229 800.0 637 64.7
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 3.5e-216 755.4 639 61.2
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 7.7e-216 754.2 635 60.3
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 1.7e-215 753.1 637 60.9
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.7e-215 753.1 637 60.9
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 3.2e-214 748.8 637 60.3
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.4e-212 743.4 641 60.7
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 5.7e-211 738.0 608 61.2
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 1.3e-210 736.9 611 61.4
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 1.3e-210 736.9 636 59.0
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 1.1e-209 733.8 634 60.7
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 1.8e-209 733.0 603 62.7
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 8.5e-207 724.2 629 58.5
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 8.5e-207 724.2 602 62.0
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 4.2e-206 721.8 610 62.3
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 1.2e-205 720.3 608 61.3
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 1.8e-204 716.5 601 59.9
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 1.8e-204 716.5 607 60.8
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 3.0e-204 715.7 639 57.7
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 6.8e-204 714.5 612 61.1
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 1.5e-203 713.4 631 57.4
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 4.4e-203 711.8 638 57.5
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 9.8e-203 710.7 618 60.2
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 2.2e-202 709.5 638 58.0
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 2.8e-202 709.1 633 57.5
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 1.1e-201 707.2 600 60.3
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 1.8e-201 706.4 608 59.0
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 4.1e-201 705.3 609 59.3
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 3.5e-200 702.2 607 58.5
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 7.7e-200 701.0 648 56.5
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 1.0e-199 700.7 615 58.4
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 3.8e-199 698.7 631 56.6
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 8.6e-199 697.6 607 58.3
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 7.3e-198 694.5 630 56.8
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 2.1e-197 693.0 617 57.4
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 5.2e-196 688.3 510 67.5
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 6.8e-196 688.0 602 58.5
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 1.2e-195 687.2 609 57.1
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 7.5e-195 684.5 626 55.9
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 9.8e-195 684.1 609 57.6
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 9.8e-195 684.1 620 56.1
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 1.3e-194 683.7 610 56.2
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 1.7e-194 683.3 613 56.1
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 2.2e-194 682.9 623 56.8
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 2.9e-194 682.6 506 66.8
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 3.7e-194 682.2 633 56.2
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 6.4e-194 681.4 633 56.2
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 7.0e-193 677.9 635 56.2
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 9.2e-193 677.6 613 56.3
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 1.2e-192 677.2 610 55.7
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 1.7e-191 673.3 610 55.4
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 1.5e-190 670.2 601 56.7
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 1.9e-190 669.8 623 56.7
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 5.6e-190 668.3 629 55.3
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 1.2e-189 667.2 636 55.5
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 6.8e-188 661.4 622 54.7
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 1.3e-186 657.1 602 57.0
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 2.2e-186 656.4 594 56.1
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 6.4e-186 654.8 610 55.1
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 4.1e-185 652.1 624 55.8
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 3.5e-184 649.0 623 55.2
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 4.6e-184 648.7 441 71.7
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 7.8e-184 647.9 633 56.1
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 7.3e-182 641.3 609 56.3
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 7.3e-182 641.3 660 54.2
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 2.1e-181 639.8 632 53.0
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 2.8e-181 639.4 613 55.1
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 2.6e-179 632.9 615 54.8
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 2.6e-179 632.9 616 53.1
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.2e-176 624.0 601 53.2
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.2e-176 624.0 468 64.5
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.2e-176 624.0 468 64.5
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 7.3e-174 614.8 540 58.5
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 8.1e-173 611.3 554 56.5
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 8.1e-173 611.3 674 50.1
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 6.8e-172 608.2 441 65.8
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 9.9e-171 604.4 601 52.7
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 5.4e-169 598.6 534 59.2
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 7.3e-166 588.2 533 57.8
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 2.0e-163 580.1 595 52.3
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 2.3e-159 566.6 531 55.6
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 6.6e-159 565.1 402 66.9
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 7.3e-158 561.6 550 53.6
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 1.3e-157 560.8 527 54.5
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 1.8e-156 557.0 386 69.2
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 1.1e-153 547.7 391 66.5
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 1.1e-153 547.7 391 66.5
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 7.4e-150 535.0 386 65.8
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 1.3e-149 534.3 387 66.7
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 1.5e-147 527.3 387 66.7
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 4.2e-145 519.2 614 48.4
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 8.7e-143 511.5 520 50.6
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.1e-142 511.1 525 52.8
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 1.5e-142 510.8 524 52.3
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 4.3e-142 509.2 517 54.0
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 1.2e-136 491.1 395 61.8
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 7.9e-136 488.4 458 53.7
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.3e-135 487.6 587 46.8
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 1.5e-134 484.2 458 56.6
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 5.5e-129 465.7 450 56.2
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 2.1e-128 463.8 462 52.4
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 6.9e-124 448.7 460 51.7
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 3.2e-121 439.9 397 56.2
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 1.5e-118 431.0 456 51.1
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 3.3e-118 429.9 484 46.7
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 5.3e-116 422.5 462 48.1
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 6.1e-112 409.1 357 58.8
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 1.1e-110 404.8 498 44.2
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.3e-108 396.0 520 42.9
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.6e-107 393.7 517 42.4
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 1.6e-99 367.9 264 68.2
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 1.9e-97 360.9 257 68.5
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 4.2e-89 333.2 517 39.8
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 1.8e-87 327.8 517 37.1
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 8.8e-87 325.5 324 50.9
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 5.0e-82 309.7 384 43.8
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 7.3e-81 305.8 276 55.4
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 4.7e-80 303.1 314 52.5
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 2.1e-72 277.7 199 63.8
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.6e-65 253.1 467 35.8
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 4.3e-57 226.9 160 66.2
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 2.9e-45 187.6 133 64.7
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 3.5e-43 180.6 195 46.2
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 5.1e-42 176.8 253 46.2
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 6.9e-39 166.4 124 63.7
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 4.5e-38 163.7 121 62.8
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 7.6e-38 162.9 245 41.6
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.3e-37 162.2 124 62.1
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 2.2e-37 161.4 204 48.5
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 1.6e-27 128.6 120 59.2
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 1.8e-23 115.2 88 61.4
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 6.9e-23 113.2 142 47.9
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 4.2e-20 104.0 222 32.0
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 2.2e-16 91.7 72 63.9
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 2.7e-11 74.7 123 40.7
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.9e-09 68.6 137 34.3
QL01p050333 Quercus lobata HOM05D005279 ORTHO05D037448 1.2e-06 59.3 50 58.0


User provided reference genes

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