Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1853 Punica granatum HOM05D007731 ORTHO05D008483 2.1e-115 419.1 215 100.0
CiPaw.08G067400 Carya illinoinensis HOM05D007731 ORTHO05D008483 9.3e-23 111.3 247 37.2
Duzib093G0569 Durio zibethinus HOM05D007731 ORTHO05D008483 1.2e-22 110.9 267 35.6
Manes.05G145300 Manihot esculenta HOM05D007731 ORTHO05D008483 2.1e-22 110.2 259 37.1
QL02p012129 Quercus lobata HOM05D007731 ORTHO05D008483 2.1e-22 110.2 240 40.0
Cfa013976 Carpinus fangiana HOM05D007731 ORTHO05D008483 6.0e-22 108.6 252 38.5
Thecc.08G047100 Theobroma cacao HOM05D007731 ORTHO05D008483 6.0e-22 108.6 263 36.1
CANSAT25G3722 Cannabis sativa HOM05D007731 ORTHO05D008483 7.8e-22 108.2 163 45.4
Haze_22661 Corylus avellana HOM05D007731 ORTHO05D008483 1.7e-21 107.1 159 46.5
Dinv39536 Davidia involucrata HOM05D007731 ORTHO05D008483 3.9e-21 105.9 166 45.8
Potri.002G019700 Populus trichocarpa HOM05D007731 ORTHO05D008483 5.1e-21 105.5 265 35.5
COL.COLO4_26124 Corchorus olitorius HOM05D007731 ORTHO05D008483 8.7e-21 104.8 173 43.9
Nn6g32002 Nelumbo nucifera HOM05D007731 ORTHO05D008483 8.7e-21 104.8 201 39.3
RcHm_v2.0_Chr6g0303181 Rosa chinensis HOM05D007731 ORTHO05D008483 2.5e-20 103.2 237 36.7
Gohir.A05G185300 Gossypium hirsutum HOM05D007731 ORTHO05D008483 7.3e-20 101.7 203 40.4
CSS0037397 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 9.6e-20 101.3 175 41.7
Gohir.D05G188100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.6e-19 100.5 183 42.1
TAR376G0482 Trochodendron aralioides HOM05D007731 ORTHO05D008483 1.6e-19 100.5 234 35.0
Manes.18G011966 Manihot esculenta HOM05D007731 ORTHO05D008483 2.8e-19 99.8 256 36.7
TWI56G0526 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 3.6e-19 99.4 178 41.6
Cpa.g.sc26.305 Carica papaya HOM05D007731 ORTHO05D008483 4.8e-19 99.0 162 40.7
TWI12G0892 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 8.1e-19 98.2 151 41.7
MSTRG.25262 Avicennia marina HOM05D007731 ORTHO05D008483 1.4e-18 97.4 243 36.6
CiPaw.07G147300 Carya illinoinensis HOM05D007731 ORTHO05D008483 1.4e-18 97.4 161 44.1
Hma1.2p1_0733F.1_g210180 Hydrangea macrophylla HOM05D007731 ORTHO05D008483 1.4e-18 97.4 237 36.7
TAR628G0423 Trochodendron aralioides HOM05D007731 ORTHO05D008483 1.4e-18 97.4 249 34.5
Gorai.009G193400 Gossypium raimondii HOM05D007731 ORTHO05D008483 1.8e-18 97.1 188 39.9
CSS0046256 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 2.4e-18 96.7 236 39.8
Prupe.1G363100 Prunus persica HOM05D007731 ORTHO05D008483 6.9e-18 95.1 261 36.4
ClCG08G014190 Citrullus lanatus HOM05D007731 ORTHO05D008483 9.0e-18 94.7 184 40.8
TPR.G34549 Trifolium pratense HOM05D007731 ORTHO05D008483 9.0e-18 94.7 225 39.1
FvH4_2g38210 Fragaria vesca HOM05D007731 ORTHO05D008483 2.0e-17 93.6 213 36.6
Sabra02G0016000 Salix brachista HOM05D007731 ORTHO05D008483 2.0e-17 93.6 264 34.5
FAN27G0472 Fragaria x ananassa HOM05D007731 ORTHO05D008483 2.6e-17 93.2 164 42.7
Potri.005G241800 Populus trichocarpa HOM05D007731 ORTHO05D008483 5.8e-17 92.0 261 33.0
CsaV3_2G024250 Cucumis sativus L. HOM05D007731 ORTHO05D008483 7.6e-17 91.7 179 40.8
Phvul.009G009600 Phaseolus vulgaris HOM05D007731 ORTHO05D008483 7.6e-17 91.7 155 43.2
FAN15G0282 Fragaria x ananassa HOM05D007731 ORTHO05D008483 1.3e-16 90.9 164 40.9
FAN20G0947 Fragaria x ananassa HOM05D007731 ORTHO05D008483 1.7e-16 90.5 165 41.8
CSS0005102 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 2.2e-16 90.1 236 39.0
Medtr3g113660 Medicago truncatula HOM05D007731 ORTHO05D008483 2.9e-16 89.7 222 37.4
Nn5g30769 Nelumbo nucifera HOM05D007731 ORTHO05D008483 2.9e-16 89.7 134 44.8
PSO541G3821 Papaver somniferum HOM05D007731 ORTHO05D008483 3.8e-16 89.4 261 31.4
Ciclev10002425m.g Citrus clementina HOM05D007731 ORTHO05D008483 4.9e-16 89.0 154 43.5
Cc00_g29330 Coffea canephora HOM05D007731 ORTHO05D008483 6.4e-16 88.6 260 34.2
Psat0s2878g0040 Pisum sativum HOM05D007731 ORTHO05D008483 8.4e-16 88.2 229 37.1
CSS0031900 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 1.1e-15 87.8 168 38.7
Gohir.A01G110400 Gossypium hirsutum HOM05D007731 ORTHO05D008483 3.2e-15 86.3 181 40.3
Sabra05G0187200 Salix brachista HOM05D007731 ORTHO05D008483 4.2e-15 85.9 194 34.0
Eucgr.H00961 Eucalyptus grandis HOM05D007731 ORTHO05D008483 7.1e-15 85.1 200 40.5
Aqoxy6G02285 Aquilegia oxysepala HOM05D007731 ORTHO05D008483 1.2e-14 84.3 247 31.2
Sed0013309 Sechium edule HOM05D007731 ORTHO05D008483 4.6e-14 82.4 220 34.5
Lsat_1_v5_gn_8_30081 Lactuca sativa HOM05D007731 ORTHO05D008483 1.0e-13 81.3 212 37.3
Lj4P799T27 Lonicera japonica HOM05D007731 ORTHO05D008483 1.0e-13 81.3 283 31.8
Rhsim06G0016400 Rhododendron simsii HOM05D007731 ORTHO05D008483 1.0e-13 81.3 192 34.9
Rhsim06G0019700 Rhododendron simsii HOM05D007731 ORTHO05D008483 1.0e-13 81.3 192 34.9
arahy.Tifrunner.gnm1.ann1.WY2XWP Arachis hypogaea HOM05D007731 ORTHO05D008483 1.3e-13 80.9 219 36.1
ECA233G0921 Erigeron canadensis HOM05D007731 ORTHO05D008483 2.3e-13 80.1 189 36.5
arahy.Tifrunner.gnm1.ann1.3IU0NQ Arachis hypogaea HOM05D007731 ORTHO05D008483 3.9e-13 79.3 221 35.3
Gohir.D02G098500 Gossypium hirsutum HOM05D007731 ORTHO05D008483 3.9e-13 79.3 226 36.3
Actinidia16998 Actinidia chinensis HOM05D007731 ORTHO05D008483 5.1e-13 79.0 229 33.2
Gohir.D01G097000 Gossypium hirsutum HOM05D007731 ORTHO05D008483 5.1e-13 79.0 180 37.8
Gorai.002G122700 Gossypium raimondii HOM05D007731 ORTHO05D008483 5.1e-13 79.0 180 37.8
SGA_v2.0_scaffold92G28205 Striga asiatica HOM05D007731 ORTHO05D008483 6.7e-13 78.6 215 35.8
Glyma.04G023500 Glycine max HOM05D007731 ORTHO05D008483 1.9e-12 77.0 249 34.9
Gorai.005G112400 Gossypium raimondii HOM05D007731 ORTHO05D008483 1.9e-12 77.0 226 35.8
VMungo1309G0548 Vigna mungo HOM05D007731 ORTHO05D008483 1.9e-12 77.0 154 40.3
Gohir.A02G083100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 3.3e-12 76.3 217 35.5
Lalb_Chr23g0266081 Lupinus albus HOM05D007731 ORTHO05D008483 9.6e-12 74.7 212 35.8
Sc15g0004830 Simmondsia chinensis HOM05D007731 ORTHO05D008483 1.3e-11 74.3 195 34.4
PGSC0003DMG400009876 Solanum tuberosum HOM05D007731 ORTHO05D008483 2.8e-11 73.2 216 32.4
Ca_15482_v3 Cicer arietinum L. HOM05D007731 ORTHO05D008483 3.6e-11 72.8 119 44.5
Actinidia15437 Actinidia chinensis HOM05D007731 ORTHO05D008483 6.2e-11 72.0 222 32.0
Glyma.06G023400 Glycine max HOM05D007731 ORTHO05D008483 1.4e-10 70.9 223 34.1
Sopen04g035340 Solanum pennellii HOM05D007731 ORTHO05D008483 1.4e-10 70.9 121 42.1
CARHR020550 Cardamine hirsuta HOM05D009961 ORTHO05D008483 1.8e-10 70.5 158 35.4
CsaV3_3G045970 Cucumis sativus L. HOM05D007731 ORTHO05D008483 3.1e-10 69.7 192 37.0
Lj1g0026139 Lotus japonicus HOM05D007731 ORTHO05D008483 5.3e-10 68.9 247 29.6
DCAR_013881 Daucus carota HOM05D007731 ORTHO05D008483 3.4e-09 66.2 144 38.9
AT1G20070 Arabidopsis thaliana HOM05D009961 ORTHO05D008483 2.2e-08 63.5 157 35.0
MELO3C003742.2 Cucumis melo HOM05D007731 ORTHO05D008483 2.9e-08 63.2 192 35.4
BraA06t24726Z Brassica rapa HOM05D009961 ORTHO05D008483 4.9e-08 62.4 48 60.4
Carub.0001s1960 Capsella rubella HOM05D009961 ORTHO05D008483 6.4e-08 62.0 214 30.8
unitig_749.g13899 Utricularia gibba HOM05D007731 ORTHO05D008483 1.1e-07 61.2 170 32.9
Migut.C00858 Erythranthe guttata HOM05D007731 ORTHO05D008483 1.9e-07 60.5 138 39.1
THA.LOC104811421 Tarenaya hassleriana HOM05D009961 ORTHO05D008483 3.2e-07 59.7 165 33.9
Aa31LG7G4510 Aethionema arabicum HOM05D009961 ORTHO05D008483 4.2e-07 59.3 71 47.9
A06p16220 Brassica napus HOM05D009961 ORTHO05D008483 4.2e-07 59.3 210 30.0
BraA07t29330Z Brassica rapa HOM05D009961 ORTHO05D008483 4.2e-07 59.3 156 32.1
A07p16020 Brassica napus HOM05D009961 ORTHO05D008483 5.5e-07 58.9 156 32.1
Lalb_Chr19g0131461 Lupinus albus HOM05D007731 ORTHO05D008483 7.1e-07 58.5 46 58.7
BcaB07g32022 Brassica carinata HOM05D009961 ORTHO05D008483 9.3e-07 58.2 208 31.2
ClCG05G015580 Citrullus lanatus HOM05D007731 ORTHO05D008483 9.3e-07 58.2 119 38.7
BcaC05g25901 Brassica carinata HOM05D009961 ORTHO05D008483 1.6e-06 57.4 217 30.0
BcaC07g39017 Brassica carinata HOM05D009961 ORTHO05D008483 1.6e-06 57.4 71 45.1
C05p18560 Brassica napus HOM05D009961 ORTHO05D008483 1.6e-06 57.4 217 30.0
BolC5t30567H Brassica oleracea HOM05D009961 ORTHO05D008483 1.6e-06 57.4 217 30.0
Thhalv10008606m.g Eutrema salsugineum HOM05D009961 ORTHO05D008483 1.6e-06 57.4 202 30.7
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 1.6e-06 57.4 116 35.3
BcaB03g14337 Brassica carinata HOM05D009961 ORTHO05D008483 3.5e-06 56.2 148 35.1
Sp1g17840 Schrenkiella parvula HOM05D009961 ORTHO05D008483 4.6e-06 55.8 225 28.9
BolC7t42871H Brassica oleracea HOM05D009961 ORTHO05D008483 6.0e-06 55.5 201 28.9


User provided reference genes

Program Settings